mediator of RNA polymerase II transcription subunit
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g09480 FvH4_3g09480 |
| malus_domestica | MD10G1256400.v1.1 |
| prunus_persica | Prupe.4G087000_v2.0.a1 Prupe.4G087200_v2.0.a1 Prupe.4G087200_v2.0.a1 |
| pyrus_communis | pycom10g21220 |
| rosa_chinensis | RchiOBHm_Chr5g0015061 |
| rosa_laevigata | RLG00000032166 |
| rosa_multiflora | Rmu_co8507481.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00061470 |
| rosa_rugosa | Rorug05G0023800 Rorug05G0023900 Rorug05G0023900 Rorug05G0023900 Rorug05G0024000 |
| rosa_samantha | Rh5AG118400 Rh5BG116300 Rh5CG127200 Rh5DG115200 |
| rosa_wichuraiana | Rw5G010230 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 486, 495 |
| AclI | AACGTT | 1 cut(s) | 477 |
| AclWI | GGATC | 1 cut(s) | 204 |
| AcoI | YGGCCR | 1 cut(s) | 496 |
| AcsI | RAATTY | 1 cut(s) | 11 |
| AfaI | GTAC | 1 cut(s) | 267 |
| AgsI | TTSAA | 1 cut(s) | 209 |
| AluBI | AGCT | 3 cut(s) | 76, 202, 278 |
| AluI | AGCT | 3 cut(s) | 76, 202, 278 |
| Alw21I | GWGCWC | 1 cut(s) | 380 |
| Alw26I | GTCTC | 1 cut(s) | 125 |
| AlwI | GGATC | 1 cut(s) | 204 |
| AoxI | GGCC | 3 cut(s) | 80, 417, 496 |
| ApoI | RAATTY | 1 cut(s) | 11 |
| AseI | ATTAAT | 1 cut(s) | 167 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 279 |
| AsuHPI | GGTGA | 1 cut(s) | 77 |
| Bbv12I | GWGCWC | 1 cut(s) | 380 |
| BccI | CCATC | 1 cut(s) | 181 |
| BcoDI | GTCTC | 1 cut(s) | 125 |
| BisI | GCNGC | 2 cut(s) | 487, 496 |
| BlsI | GCNGC | 2 cut(s) | 488, 497 |
| BsaJI | CCNNGG | 1 cut(s) | 32 |
| BseDI | CCNNGG | 1 cut(s) | 32 |
| BseGI | GGATG | 3 cut(s) | 192, 247, 268 |
| BshFI | GGCC | 3 cut(s) | 82, 419, 498 |
| BsiHKAI | GWGCWC | 1 cut(s) | 380 |
| BsmAI | GTCTC | 1 cut(s) | 125 |
| BsnI | GGCC | 3 cut(s) | 82, 419, 498 |
| Bsp1286I | GDGCHC | 1 cut(s) | 380 |
| Bsp143I | GATC | 3 cut(s) | 55, 107, 196 |
| BspACI | CCGC | 2 cut(s) | 486, 495 |
| BspANI | GGCC | 3 cut(s) | 82, 419, 498 |
| BspPI | GGATC | 1 cut(s) | 204 |
| BssECI | CCNNGG | 1 cut(s) | 32 |
| BssMI | GATC | 3 cut(s) | 55, 107, 196 |
| Bst4CI | ACNGT | 2 cut(s) | 382, 512 |
| BstC8I | GCNNGC | 2 cut(s) | 344, 466 |
| BstDEI | CTNAG | 1 cut(s) | 347 |
| BstF5I | GGATG | 3 cut(s) | 192, 247, 268 |
| BstKTI | GATC | 3 cut(s) | 58, 110, 199 |
| BstMAI | GTCTC | 1 cut(s) | 125 |
| BstMBI | GATC | 3 cut(s) | 55, 107, 196 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 465, 492, 495 |
| BsuRI | GGCC | 3 cut(s) | 82, 419, 498 |
| BtsCI | GGATG | 3 cut(s) | 192, 247, 268 |
| BtsI | GCAGTG | 1 cut(s) | 110 |
| BtsIMutI | CAGTG | 1 cut(s) | 110 |
| Cac8I | GCNNGC | 2 cut(s) | 344, 466 |
| Csp6I | GTAC | 1 cut(s) | 266 |
| CviAII | CATG | 2 cut(s) | 89, 500 |
| CviJI | RGCY | 6 cut(s) | 76, 82, 202, 278, 419, 498 |
| CviKI_1 | RGCY | 6 cut(s) | 76, 82, 202, 278, 419, 498 |
| CviQI | GTAC | 1 cut(s) | 266 |
| DdeI | CTNAG | 1 cut(s) | 347 |
| DpnI | GATC | 3 cut(s) | 57, 109, 198 |
| DpnII | GATC | 3 cut(s) | 55, 107, 196 |
| EaeI | YGGCCR | 1 cut(s) | 496 |
| FaeI | CATG | 2 cut(s) | 92, 503 |
| FatI | CATG | 2 cut(s) | 88, 499 |
| Fnu4HI | GCNGC | 2 cut(s) | 487, 496 |
| FokI | GGATG | 3 cut(s) | 199, 234, 275 |
| Fsp4HI | GCNGC | 2 cut(s) | 487, 496 |
| GluI | GCNGC | 2 cut(s) | 487, 496 |
| HaeIII | GGCC | 3 cut(s) | 82, 419, 498 |
| Hin1II | CATG | 2 cut(s) | 92, 503 |
| HincII | GTYRAC | 1 cut(s) | 481 |
| HindII | GTYRAC | 1 cut(s) | 481 |
| HindIII | AAGCTT | 2 cut(s) | 74, 276 |
| HinfI | GANTC | 1 cut(s) | 133 |
| HpaI | GTTAAC | 1 cut(s) | 481 |
| HphI | GGTGA | 1 cut(s) | 77 |
| Hpy166II | GTNNAC | 1 cut(s) | 481 |
| Hpy188I | TCNGA | 2 cut(s) | 33, 130 |
| Hpy188III | TCNNGA | 1 cut(s) | 172 |
| Hpy8I | GTNNAC | 1 cut(s) | 481 |
| HpyAV | CCTTC | 3 cut(s) | 176, 324, 403 |
| HpyCH4III | ACNGT | 2 cut(s) | 382, 512 |
| HpyCH4IV | ACGT | 1 cut(s) | 477 |
| HpyCH4V | TGCA | 2 cut(s) | 102, 239 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 465, 492, 495 |
| HpyF3I | CTNAG | 1 cut(s) | 347 |
| HpySE526I | ACGT | 1 cut(s) | 477 |
| Hsp92II | CATG | 2 cut(s) | 92, 503 |
| KspAI | GTTAAC | 1 cut(s) | 481 |
| Kzo9I | GATC | 3 cut(s) | 55, 107, 196 |
| LpnPI | CCDG | 2 cut(s) | 157, 315 |
| MaeII | ACGT | 1 cut(s) | 477 |
| MalI | GATC | 3 cut(s) | 57, 109, 198 |
| MboI | GATC | 3 cut(s) | 55, 107, 196 |
| MboII | GAAGA | 1 cut(s) | 88 |
| MhlI | GDGCHC | 1 cut(s) | 380 |
| MluCI | AATT | 2 cut(s) | 11, 191 |
| MlyI | GAGTC | 1 cut(s) | 127 |
| MnlI | CCTC | 2 cut(s) | 27, 93 |
| MroXI | GAANNNNTTC | 1 cut(s) | 279 |
| MseI | TTAA | 3 cut(s) | 167, 306, 480 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 465, 492, 495 |
| NdeII | GATC | 3 cut(s) | 55, 107, 196 |
| NlaIII | CATG | 2 cut(s) | 92, 503 |
| PdmI | GAANNNNTTC | 1 cut(s) | 279 |
| PkrI | GCNGC | 2 cut(s) | 488, 497 |
| PleI | GAGTC | 1 cut(s) | 127 |
| PpsI | GAGTC | 1 cut(s) | 127 |
| PshBI | ATTAAT | 1 cut(s) | 167 |
| Psp1406I | AACGTT | 1 cut(s) | 477 |
| RsaI | GTAC | 1 cut(s) | 267 |
| RsaNI | GTAC | 1 cut(s) | 266 |
| SaqAI | TTAA | 3 cut(s) | 167, 306, 480 |
| SatI | GCNGC | 2 cut(s) | 487, 496 |
| Sau3AI | GATC | 3 cut(s) | 55, 107, 196 |
| SchI | GAGTC | 1 cut(s) | 127 |
| SduI | GDGCHC | 1 cut(s) | 380 |
| SetI | ASST | 6 cut(s) | 78, 204, 219, 280, 339, 480 |
| Sse9I | AATT | 2 cut(s) | 11, 191 |
| SsiI | CCGC | 2 cut(s) | 486, 495 |
| TaaI | ACNGT | 2 cut(s) | 382, 512 |
| TaiI | ACGT | 1 cut(s) | 480 |
| TasI | AATT | 2 cut(s) | 11, 191 |
| TatI | WGTACW | 1 cut(s) | 265 |
| TauI | GCSGC | 2 cut(s) | 489, 498 |
| Tru1I | TTAA | 3 cut(s) | 167, 306, 480 |
| Tru9I | TTAA | 3 cut(s) | 167, 306, 480 |
| TscAI | CASTG | 1 cut(s) | 117 |
| TspGWI | ACGGA | 1 cut(s) | 467 |
| TspRI | CASTG | 1 cut(s) | 117 |
| VspI | ATTAAT | 1 cut(s) | 167 |
| XapI | RAATTY | 1 cut(s) | 11 |
| XmnI | GAANNNNTTC | 1 cut(s) | 279 |