Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003819

Physical Location & Seq

Genomic Coordinates Reverse (-)

35162456 .. 35163487

Gene Structure 1032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1257500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGTCAAAGAGACCTGAGCTTGGTCGATTGTTCAGTGAGGCTATGACCGCTTACTCTGCTATATGTTTTGATCAAAAGGTATTCACTGAATATAAAGGTTTTGAAGAGGTGACAGAGCTGATGGACGTAGGAGGTGTGAAGCATGTTGCGGGAAATATGTTTGAGTCAATACCACATGCTCAGTCGATAATGATGAAGTTGCTGAGAAACTGTTGGAATGCGTTACCGGAAACTAGGAAGGTAATAGTTGTGGAATTTGTAGTACCTGAAGTACTGGAAAATACACCAGAAACAAGGAACACACTCGCCTCGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko00950 ko01100 ko01110 map00940 map00950 map01100 map01110

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

106

Amino Acids

11.89

Weight (kDa)

5.36

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00830 AT4G00830 AT4G00830 AT4G00830 AT4G00830 AT4G00830
fragaria_vesca	FvH4_7g17500 FvH4_7g17500 FvH4_7g17500
malus_domestica	MD01G1087600.v1.1 MD07G1157800.v1.1 MD10G1257500.v1.1
prunus_persica	Prupe.2G196200_v2.0.a1 Prupe.2G196200_v2.0.a1 Prupe.2G196200_v2.0.a1 Prupe.2G196200_v2.0.a1 Prupe.2G196200_v2.0.a1 Prupe.2G196200_v2.0.a1 Prupe.2G196200_v2.0.a1
pyrus_communis	pycom01g11160 pycom04g11680 pycom07g15440 pycom10g21370
rosa_chinensis	RchiOBHm_Chr1g0360911
rosa_laevigata	RLG00000027770
rosa_roxburghii	Rroxscaffold_4G00295710
rosa_rugosa	Rorug01G0283300 Rorug01G0283400
rosa_samantha	Rh1AG294900 Rh1BG259700 Rh1CG277100 Rh1DG289700
rosa_wichuraiana	Rw1G026060 Rw1G026090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	48, 149
AcsI	RAATTY	1 cut(s)	254
AcuI	CTGAAG	1 cut(s)	288
AfaI	GTAC	2 cut(s)	264, 273
AfiI	CCNNNNNNNGG	1 cut(s)	20
AgsI	TTSAA	1 cut(s)	104
AluBI	AGCT	2 cut(s)	19, 118
AluI	AGCT	2 cut(s)	19, 118
Alw26I	GTCTC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	254
AsuHPI	GGTGA	1 cut(s)	121
BccI	CCATC	1 cut(s)	115
BclI	TGATCA	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	4
BfaI	CTAG	1 cut(s)	234
BmcAI	AGTACT	1 cut(s)	273
Bpu10I	CCTNAGC	1 cut(s)	15
BsaI	GGTCTC	1 cut(s)	4
BsaWI	WCCGGW	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
Bse1I	ACTGG	1 cut(s)	279
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseMII	CTCAG	3 cut(s)	6, 194, 194
BseNI	ACTGG	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	227
BslI	CCNNNNNNNGG	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	4
BsmI	GAATGC	1 cut(s)	223
Bso31I	GGTCTC	1 cut(s)	4
Bsp143I	GATC	1 cut(s)	70
BspACI	CCGC	2 cut(s)	48, 149
BspCNI	CTCAG	3 cut(s)	7, 193, 195
BspTNI	GGTCTC	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	279
BssMI	GATC	1 cut(s)	70
Bst4CI	ACNGT	1 cut(s)	212
Bst6I	CTCTTC	1 cut(s)	99
BstDEI	CTNAG	3 cut(s)	15, 180, 203
BstKTI	GATC	1 cut(s)	73
BstMAI	GTCTC	1 cut(s)	4
BstMBI	GATC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 56
BstNSI	RCATGY	2 cut(s)	146, 179
BtsIMutI	CAGTG	2 cut(s)	40, 84
Csp6I	GTAC	2 cut(s)	263, 272
CviAII	CATG	3 cut(s)	143, 176, 315
CviJI	RGCY	3 cut(s)	19, 41, 118
CviKI_1	RGCY	3 cut(s)	19, 41, 118
CviQI	GTAC	2 cut(s)	263, 272
DdeI	CTNAG	3 cut(s)	15, 180, 203
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Eco31I	GGTCTC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	288
FaeI	CATG	3 cut(s)	146, 179, 318
FaiI	YATR	8 cut(s)	44, 62, 64, 93, 144, 158, 177, 316
FatI	CATG	3 cut(s)	142, 175, 314
FauI	CCCGC	1 cut(s)	142
FbaI	TGATCA	1 cut(s)	70
FspBI	CTAG	1 cut(s)	234
HapII	CCGG	1 cut(s)	227
Hin1II	CATG	3 cut(s)	146, 179, 318
HinfI	GANTC	1 cut(s)	164
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	1 cut(s)	121
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4IV	ACGT	1 cut(s)	126
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 56
HpyF3I	CTNAG	3 cut(s)	15, 180, 203
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	3 cut(s)	146, 179, 318
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	70
LpnPI	CCDG	5 cut(s)	27, 240, 260, 279, 300
MaeI	CTAG	1 cut(s)	234
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	2 cut(s)	109, 222
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	1 cut(s)	116
MluCI	AATT	1 cut(s)	254
MlyI	GAGTC	1 cut(s)	173
MmeI	TCCRAC	1 cut(s)	194
MnlI	CCTC	3 cut(s)	31, 100, 125
MspI	CCGG	1 cut(s)	227
Mva1269I	GAATGC	1 cut(s)	223
MwoI	GCNNNNNNNGC	2 cut(s)	47, 56
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	3 cut(s)	146, 179, 318
NmuCI	GTSAC	1 cut(s)	109
NspI	RCATGY	2 cut(s)	146, 179
PctI	GAATGC	1 cut(s)	223
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
RsaI	GTAC	2 cut(s)	264, 273
RsaNI	GTAC	2 cut(s)	263, 272
Sau3AI	GATC	1 cut(s)	70
ScaI	AGTACT	1 cut(s)	273
SchI	GAGTC	1 cut(s)	173
Sse9I	AATT	1 cut(s)	254
SsiI	CCGC	2 cut(s)	48, 149
SspMI	CTAG	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	212
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	3 cut(s)	25, 185, 311
TasI	AATT	1 cut(s)	254
TatI	WGTACW	1 cut(s)	271
TscAI	CASTG	2 cut(s)	40, 91
TseFI	GTSAC	1 cut(s)	109
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	1 cut(s)	209
TspRI	CASTG	2 cut(s)	40, 91
XapI	RAATTY	1 cut(s)	254
XceI	RCATGY	2 cut(s)	146, 179
XspI	CTAG	1 cut(s)	234
ZrmI	AGTACT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.