pycom04g11680

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0003819
Physical Location & Seq
Forward (+)
14527941 .. 14529258
1318 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g11680.2

Sequence Viewer

Length: 537 bp
ATGATGTTCTCTCAGTCGGCGGCGGCGGAGTGGCGAGTTGCGATGTGGACTCAGGCCTCTCGGCCTCTGGGTTTTATAGGTCATCCACTCGAAGTTGTCCTTGCGAAGCCTCAGACTGAGAAGAAACCTGATGGGGCTTATTCGTACAATGCCGGGCCTCATGCAAACCACCTTGCACACCCACGGTATGGTGGTGGTTTTGGCGGAAATCCATATGGCTCTGTGGGGGCTGGATATGGTGTTGCTGCAGGCTTTCAGCAGCAATTGACTGTTCATTGGGCTACAGTCAATTGTTTGCTCCTCGATTTCAAGCTATTTACAACAAAAACCATCAGATCTGGGCTGGGTTGGGAAGCACCGTTTCTCTCTCATTTCTCTCAAATTCGAGACTTCTCTCTCCATTCTCTCAACCTAGCCCCAGCGCTGCTCACCCCATTCCTCTTCATAATCTCAGTTAAATCCATCGTCATGGGACCTTCTTCCTCAGACCTTCATGTGTACGTTACCTTTTCATCTAAATTAGGATCAGGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000398 GO:0001101 GO:0002376 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0005829 GO:0006109 GO:0006139 GO:0006355 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009909 GO:0009987 GO:0010033 GO:0010439 GO:0010453 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010675 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019222 GO:0031056 GO:0031060 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031347 GO:0031348 GO:0031399 GO:0032268 GO:0032269 GO:0032870 GO:0032991 GO:0033043 GO:0033044 GO:0034097 GO:0034248 GO:0034249 GO:0034341 GO:0034641 GO:0042221 GO:0042742 GO:0042762 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0043487 GO:0043488 GO:0043489 GO:0043565 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045595 GO:0045824 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048831 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061013 GO:0061085 GO:0062012 GO:0065007 GO:0065008 GO:0070887 GO:0070934 GO:0070937 GO:0071013 GO:0071204 GO:0071229 GO:0071310 GO:0071345 GO:0071346 GO:0071395 GO:0071495 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0097452 GO:0098542 GO:1900376 GO:1901360 GO:1901363 GO:1901700 GO:1901701 GO:1902275 GO:1902369 GO:1902373 GO:1902464 GO:1902494 GO:1902680 GO:1903311 GO:1903312 GO:1903506 GO:1903508 GO:1905933 GO:1990904 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

179

Amino Acids

19.26

Weight (kDa)

9.34

Isoelectric Point (pI)

22.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 188
AciI CCGC 4 cut(s) 20, 23, 26, 204
AclWI GGATC 1 cut(s) 532
AcsI RAATTY 1 cut(s) 381
AfaI GTAC 2 cut(s) 146, 500
AfeI AGCGCT 1 cut(s) 423
AfiI CCNNNNNNNGG 1 cut(s) 188
AgsI TTSAA 1 cut(s) 310
AluBI AGCT 1 cut(s) 313
AluI AGCT 1 cut(s) 313
Alw26I GTCTC 1 cut(s) 381
AlwI GGATC 1 cut(s) 532
Aor51HI AGCGCT 1 cut(s) 423
AoxI GGCC 3 cut(s) 54, 62, 155
ApeKI GCWGC 3 cut(s) 245, 259, 424
ApoI RAATTY 1 cut(s) 381
AspLEI GCGC 1 cut(s) 424
AspS9I GGNCC 2 cut(s) 155, 473
AsuC2I CCSGG 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 421
AvaII GGWCC 1 cut(s) 473
BbvI GCAGC 3 cut(s) 232, 271, 411
BccI CCATC 3 cut(s) 125, 338, 470
BcnI CCSGG 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 381
BfaI CTAG 1 cut(s) 413
BfmI CTRYAG 2 cut(s) 246, 282
BfoI RGCGCY 1 cut(s) 425
BglII AGATCT 1 cut(s) 335
BisI GCNGC 5 cut(s) 21, 24, 246, 260, 425
BlsI GCNGC 5 cut(s) 22, 25, 247, 261, 426
Bme1390I CCNGG 1 cut(s) 154
Bme18I GGWCC 1 cut(s) 473
BmgT120I GGNCC 2 cut(s) 155, 473
BmiI GGNNCC 1 cut(s) 474
BmrFI CCNGG 1 cut(s) 154
BpuMI CCSGG 1 cut(s) 154
BsaJI CCNNGG 1 cut(s) 182
Bsc4I CCNNNNNNNGG 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 182
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMII CTCAG 6 cut(s) 26, 65, 108, 125, 465, 498
BseRI GAGGAG 1 cut(s) 290
BseXI GCAGC 3 cut(s) 232, 271, 411
BseYI CCCAGC 2 cut(s) 343, 418
BshFI GGCC 3 cut(s) 56, 64, 157
BsiSI CCGG 1 cut(s) 153
BslFI GGGAC 1 cut(s) 486
BslI CCNNNNNNNGG 1 cut(s) 188
BsmAI GTCTC 1 cut(s) 381
BsmFI GGGAC 1 cut(s) 486
BsnI GGCC 3 cut(s) 56, 64, 157
Bsp143I GATC 2 cut(s) 335, 524
BspACI CCGC 4 cut(s) 20, 23, 26, 204
BspANI GGCC 3 cut(s) 56, 64, 157
BspCNI CTCAG 6 cut(s) 25, 64, 109, 124, 464, 497
BspLI GGNNCC 1 cut(s) 474
BspMAI CTGCAG 1 cut(s) 250
BspPI GGATC 1 cut(s) 532
BssECI CCNNGG 1 cut(s) 182
BssMI GATC 2 cut(s) 335, 524
Bst4CI ACNGT 4 cut(s) 186, 271, 286, 360
Bst6I CTCTTC 1 cut(s) 446
BstC8I GCNNGC 1 cut(s) 250
BstDEI CTNAG 6 cut(s) 12, 51, 111, 117, 451, 484
BstDSI CCRYGG 1 cut(s) 182
BstF5I GGATG 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 425
BstHHI GCGC 1 cut(s) 424
BstKTI GATC 2 cut(s) 338, 527
BstMAI GTCTC 1 cut(s) 381
BstMBI GATC 2 cut(s) 335, 524
BstSCI CCNGG 1 cut(s) 152
BstSFI CTRYAG 2 cut(s) 246, 282
BstV1I GCAGC 3 cut(s) 232, 271, 411
BstX2I RGATCY 1 cut(s) 335
BstXI CCANNNNNNTGG 1 cut(s) 469
BstYI RGATCY 1 cut(s) 335
BsuRI GGCC 3 cut(s) 56, 64, 157
BtgI CCRYGG 1 cut(s) 182
BtgZI GCGATG 1 cut(s) 56
BtsCI GGATG 1 cut(s) 82
Cac8I GCNNGC 1 cut(s) 250
CfoI GCGC 1 cut(s) 424
Cfr13I GGNCC 2 cut(s) 155, 473
Csp6I GTAC 2 cut(s) 145, 499
CviAII CATG 3 cut(s) 161, 469, 494
CviQI GTAC 2 cut(s) 145, 499
DdeI CTNAG 6 cut(s) 12, 51, 111, 117, 451, 484
DpnI GATC 2 cut(s) 337, 526
DpnII GATC 2 cut(s) 335, 524
Eam1104I CTCTTC 1 cut(s) 446
EarI CTCTTC 1 cut(s) 446
EciI GGCGGA 2 cut(s) 41, 219
Eco147I AGGCCT 1 cut(s) 56
Eco47I GGWCC 1 cut(s) 473
Eco47III AGCGCT 1 cut(s) 423
EcoO109I RGGNCCY 1 cut(s) 473
FaeI CATG 3 cut(s) 164, 472, 497
FaiI YATR 9 cut(s) 77, 162, 189, 214, 216, 237, 446, 470, 495
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FaqI GGGAC 1 cut(s) 486
FatI CATG 3 cut(s) 160, 468, 493
FauNDI CATATG 1 cut(s) 214
Fnu4HI GCNGC 5 cut(s) 21, 24, 246, 260, 425
FokI GGATG 1 cut(s) 69
Fsp4HI GCNGC 5 cut(s) 21, 24, 246, 260, 425
FspBI CTAG 1 cut(s) 413
GlaI GCGC 1 cut(s) 423
GluI GCNGC 5 cut(s) 21, 24, 246, 260, 425
GsaI CCCAGC 2 cut(s) 347, 422
HaeII RGCGCY 1 cut(s) 425
HaeIII GGCC 3 cut(s) 56, 64, 157
HapII CCGG 1 cut(s) 153
HhaI GCGC 1 cut(s) 424
Hin1II CATG 3 cut(s) 164, 472, 497
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HinfI GANTC 1 cut(s) 49
HpaII CCGG 1 cut(s) 153
HphI GGTGA 1 cut(s) 421
Hpy166II GTNNAC 2 cut(s) 48, 499
Hpy188I TCNGA 4 cut(s) 114, 335, 487, 536
Hpy188III TCNNGA 1 cut(s) 386
Hpy8I GTNNAC 2 cut(s) 48, 499
HpyAV CCTTC 2 cut(s) 486, 500
HpyCH4III ACNGT 4 cut(s) 186, 271, 286, 360
HpyCH4IV ACGT 1 cut(s) 501
HpyCH4V TGCA 3 cut(s) 164, 176, 248
HpyF3I CTNAG 6 cut(s) 12, 51, 111, 117, 451, 484
HpySE526I ACGT 1 cut(s) 501
Hsp92II CATG 3 cut(s) 164, 472, 497
HspAI GCGC 1 cut(s) 422
Kzo9I GATC 2 cut(s) 335, 524
LmnI GCTCC 1 cut(s) 303
Lsp1109I GCAGC 3 cut(s) 232, 271, 411
MaeI CTAG 1 cut(s) 413
MaeII ACGT 1 cut(s) 501
MaeIII GTNAC 1 cut(s) 502
MalI GATC 2 cut(s) 337, 526
MboI GATC 2 cut(s) 335, 524
MboII GAAGA 3 cut(s) 133, 433, 471
MfeI CAATTG 2 cut(s) 263, 289
MflI RGATCY 1 cut(s) 335
MluCI AATT 4 cut(s) 263, 289, 381, 518
MlyI GAGTC 1 cut(s) 43
MnlI CCTC 7 cut(s) 67, 75, 120, 168, 311, 449, 493
MseI TTAA 1 cut(s) 456
MslI CAYNNNNRTG 1 cut(s) 467
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 1 cut(s) 154
MunI CAATTG 2 cut(s) 263, 289
NciI CCSGG 1 cut(s) 154
NdeI CATATG 1 cut(s) 214
NdeII GATC 2 cut(s) 335, 524
NlaIII CATG 3 cut(s) 164, 472, 497
NlaIV GGNNCC 1 cut(s) 474
NmeAIII GCCGAG 1 cut(s) 40
PceI AGGCCT 1 cut(s) 56
PflMI CCANNNNNTGG 1 cut(s) 188
PkrI GCNGC 5 cut(s) 22, 25, 247, 261, 426
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
PpuMI RGGWCCY 1 cut(s) 473
Psp5II RGGWCCY 1 cut(s) 473
PspFI CCCAGC 2 cut(s) 343, 418
PspN4I GGNNCC 1 cut(s) 474
PspPI GGNCC 2 cut(s) 155, 473
PspPPI RGGWCCY 1 cut(s) 473
PstI CTGCAG 1 cut(s) 250
PsuI RGATCY 1 cut(s) 335
RsaI GTAC 2 cut(s) 146, 500
RsaNI GTAC 2 cut(s) 145, 499
RseI CAYNNNNRTG 1 cut(s) 467
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 5 cut(s) 21, 24, 246, 260, 425
Sau3AI GATC 2 cut(s) 335, 524
Sau96I GGNCC 2 cut(s) 155, 473
SchI GAGTC 1 cut(s) 43
ScrFI CCNGG 1 cut(s) 154
SetI ASST 9 cut(s) 82, 130, 174, 315, 414, 478, 492, 504, 509
SfcI CTRYAG 2 cut(s) 246, 282
SinI GGWCC 1 cut(s) 473
SmiMI CAYNNNNRTG 1 cut(s) 467
Sse9I AATT 4 cut(s) 263, 289, 381, 518
SseBI AGGCCT 1 cut(s) 56
SsiI CCGC 4 cut(s) 20, 23, 26, 204
SspMI CTAG 1 cut(s) 413
StuI AGGCCT 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 152
TaaI ACNGT 4 cut(s) 186, 271, 286, 360
TaiI ACGT 1 cut(s) 504
TaqI TCGA 3 cut(s) 90, 303, 385
TasI AATT 4 cut(s) 263, 289, 381, 518
TauI GCSGC 2 cut(s) 23, 26
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TseI GCWGC 3 cut(s) 245, 259, 424
TspDTI ATGAA 4 cut(s) 263, 433, 482, 501
Van91I CCANNNNNTGG 1 cut(s) 188
VpaK11BI GGWCC 1 cut(s) 473
XapI RAATTY 1 cut(s) 381
XspI CTAG 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.