Rorug01G0283400

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0003819
Physical Location & Seq
Forward (+)
39678415 .. 39679089
675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0283400.1

Sequence Viewer

Length: 675 bp
ATGCTTTGTAAGCGGAGCAGGTGGAATCCCACTATAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTGTAGAGCAGGTTGAGAGGATCTATCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAATCAAAGGGCTCGGGAGAAGCAGAAGAAGAAGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGTTACCAATTGGAAACATGAGGATCAGTATATTAACTTTGGATCTTCTGCACCTGCTTCTGCTTCTTCCGCTGGTGTGATGATTGCTGTTAACGGACAGATGGGGAACTATGGTGGTTATGGATCTATGAACATGGAGAAGAGTGTTAGGGATTGTTCAATCTCAGCTGGAGGGGGAACTAGTTCTACTTTCTTTGACATGAATGTAGAACAAACTTTCATGGAACAAAGAGGAGAAGATCACCAGGAGATTGAAACCCTTTCACTGTTTCCCGTGCATGGTGAGGACATCTTTGACAACATGAAGACTACTTCCGATGAAGGTGGCGGTCACGGTGGTGACTCTCACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCCGGAGCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000398 GO:0001101 GO:0002376 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0005829 GO:0006109 GO:0006139 GO:0006355 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009909 GO:0009987 GO:0010033 GO:0010439 GO:0010453 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010675 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019222 GO:0031056 GO:0031060 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031347 GO:0031348 GO:0031399 GO:0032268 GO:0032269 GO:0032870 GO:0032991 GO:0033043 GO:0033044 GO:0034097 GO:0034248 GO:0034249 GO:0034341 GO:0034641 GO:0042221 GO:0042742 GO:0042762 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0043455 GO:0043487 GO:0043488 GO:0043489 GO:0043565 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045595 GO:0045824 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048831 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061013 GO:0061085 GO:0062012 GO:0065007 GO:0065008 GO:0070887 GO:0070934 GO:0070937 GO:0071013 GO:0071204 GO:0071229 GO:0071310 GO:0071345 GO:0071346 GO:0071395 GO:0071495 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0097452 GO:0098542 GO:1900376 GO:1901360 GO:1901363 GO:1901700 GO:1901701 GO:1902275 GO:1902369 GO:1902373 GO:1902464 GO:1902494 GO:1902680 GO:1903311 GO:1903312 GO:1903506 GO:1903508 GO:1905933 GO:1990904 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

224

Amino Acids

25.2

Weight (kDa)

6.6

Isoelectric Point (pI)

46.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 4 - 66 6.1e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 9, 325
Acc36I ACCTGC 3 cut(s) 9, 91, 325
AccIII TCCGGA 1 cut(s) 663
AciI CCGC 4 cut(s) 13, 333, 591, 670
AclWI GGATC 4 cut(s) 119, 294, 313, 394
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 542
AgsI TTSAA 3 cut(s) 151, 423, 518
AhlI ACTAGT 1 cut(s) 443
AjnI CCWGG 1 cut(s) 507
AleI CACNNNNGTG 1 cut(s) 600
AluBI AGCT 5 cut(s) 61, 124, 431, 625, 650
AluI AGCT 5 cut(s) 61, 124, 431, 625, 650
Alw21I GWGCWC 1 cut(s) 627
AlwI GGATC 4 cut(s) 119, 294, 313, 394
Ama87I CYCGRG 1 cut(s) 186
Aor13HI TCCGGA 1 cut(s) 663
Asp700I GAANNNNTTC 1 cut(s) 445
AspS9I GGNCC 1 cut(s) 84
AsuHPI GGTGA 4 cut(s) 266, 497, 557, 614
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 1 cut(s) 84
BaeGI GKGCMC 1 cut(s) 231
BanII GRGCYC 2 cut(s) 187, 627
BbsI GAAGAC 1 cut(s) 575
Bbv12I GWGCWC 1 cut(s) 627
BccI CCATC 1 cut(s) 358
BceAI ACGGC 1 cut(s) 151
BciT130I CCWGG 1 cut(s) 509
BcuI ACTAGT 1 cut(s) 443
BfaI CTAG 1 cut(s) 444
BfmI CTRYAG 2 cut(s) 33, 93
BfuAI ACCTGC 3 cut(s) 9, 91, 325
BisI GCNGC 1 cut(s) 670
BlpI GCTNAGC 1 cut(s) 626
BlsI GCNGC 1 cut(s) 671
Bme1390I CCNGG 1 cut(s) 509
Bme18I GGWCC 1 cut(s) 84
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 84
BmiI GGNNCC 2 cut(s) 86, 668
BmrFI CCNGG 1 cut(s) 509
BpiI GAAGAC 1 cut(s) 575
BpmI CTGGAG 2 cut(s) 104, 453
Bpu1102I GCTNAGC 1 cut(s) 626
BpuEI CTTGAG 2 cut(s) 38, 641
BsaBI GATNNNNATC 1 cut(s) 47
BsaWI WCCGGW 1 cut(s) 663
Bsc4I CCNNNNNNNGG 1 cut(s) 542
Bse8I GATNNNNATC 1 cut(s) 47
BseAI TCCGGA 1 cut(s) 663
BseBI CCWGG 1 cut(s) 509
BseGI GGATG 1 cut(s) 223
BseJI GATNNNNATC 1 cut(s) 47
BseLI CCNNNNNNNGG 1 cut(s) 542
BseMII CTCAG 2 cut(s) 441, 640
BseRI GAGGAG 1 cut(s) 510
BseSI GKGCMC 1 cut(s) 231
BsgI GTGCAG 1 cut(s) 297
BsiHKAI GWGCWC 1 cut(s) 627
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 1 cut(s) 664
BslFI GGGAC 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 542
BsmFI GGGAC 1 cut(s) 70
BsoBI CYCGRG 1 cut(s) 186
Bsp1286I GDGCHC 3 cut(s) 187, 231, 627
Bsp13I TCCGGA 1 cut(s) 663
Bsp143I GATC 8 cut(s) 37, 111, 141, 239, 286, 305, 386, 502
Bsp1720I GCTNAGC 1 cut(s) 626
BspACI CCGC 4 cut(s) 13, 333, 591, 670
BspCNI CTCAG 2 cut(s) 440, 639
BspEI TCCGGA 1 cut(s) 663
BspLI GGNNCC 2 cut(s) 86, 668
BspMI ACCTGC 3 cut(s) 9, 91, 325
BspPI GGATC 4 cut(s) 119, 294, 313, 394
BssMI GATC 8 cut(s) 37, 111, 141, 239, 286, 305, 386, 502
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 3 cut(s) 94, 531, 599
Bst6I CTCTTC 1 cut(s) 398
BstDEI CTNAG 2 cut(s) 427, 626
BstF5I GGATG 1 cut(s) 223
BstKTI GATC 8 cut(s) 40, 114, 144, 242, 289, 308, 389, 505
BstMBI GATC 8 cut(s) 37, 111, 141, 239, 286, 305, 386, 502
BstMWI GCNNNNNNNGC 3 cut(s) 10, 332, 636
BstNI CCWGG 1 cut(s) 509
BstSCI CCNGG 1 cut(s) 507
BstSFI CTRYAG 2 cut(s) 33, 93
BstSLI GKGCMC 1 cut(s) 231
BstV2I GAAGAC 1 cut(s) 575
BstX2I RGATCY 3 cut(s) 111, 305, 386
BstYI RGATCY 3 cut(s) 111, 305, 386
BtsCI GGATG 1 cut(s) 223
BtsIMutI CAGTG 1 cut(s) 527
BveI ACCTGC 3 cut(s) 9, 91, 325
Cfr13I GGNCC 1 cut(s) 84
Csp6I GTAC 1 cut(s) 133
CviAII CATG 8 cut(s) 224, 232, 281, 397, 463, 484, 542, 565
CviJI RGCY 9 cut(s) 61, 124, 185, 247, 431, 625, 630, 650, 669
CviKI_1 RGCY 9 cut(s) 61, 124, 185, 247, 431, 625, 630, 650, 669
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 2 cut(s) 427, 626
DpnI GATC 8 cut(s) 39, 113, 143, 241, 288, 307, 388, 504
DpnII GATC 8 cut(s) 37, 111, 141, 239, 286, 305, 386, 502
Eam1104I CTCTTC 1 cut(s) 398
EarI CTCTTC 1 cut(s) 398
Ecl136II GAGCTC 1 cut(s) 625
Eco24I GRGCYC 2 cut(s) 187, 627
Eco47I GGWCC 1 cut(s) 84
Eco53kI GAGCTC 1 cut(s) 625
Eco88I CYCGRG 1 cut(s) 186
EcoICRI GAGCTC 1 cut(s) 625
EcoO109I RGGNCCY 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 507
EcoT38I GRGCYC 2 cut(s) 187, 627
FaeI CATG 8 cut(s) 227, 235, 284, 400, 466, 487, 545, 568
FaqI GGGAC 1 cut(s) 70
FatI CATG 8 cut(s) 223, 231, 280, 396, 462, 483, 541, 564
Fnu4HI GCNGC 1 cut(s) 670
FokI GGATG 1 cut(s) 230
FriOI GRGCYC 2 cut(s) 187, 627
Fsp4HI GCNGC 1 cut(s) 670
FspBI CTAG 1 cut(s) 444
GluI GCNGC 1 cut(s) 670
GsuI CTGGAG 2 cut(s) 104, 453
HapII CCGG 1 cut(s) 664
Hin1II CATG 8 cut(s) 227, 235, 284, 400, 466, 487, 545, 568
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HinfI GANTC 4 cut(s) 25, 48, 175, 605
HpaI GTTAAC 1 cut(s) 355
HpaII CCGG 1 cut(s) 664
HphI GGTGA 4 cut(s) 266, 497, 557, 614
Hpy166II GTNNAC 2 cut(s) 210, 355
Hpy188I TCNGA 3 cut(s) 42, 217, 580
Hpy188III TCNNGA 4 cut(s) 151, 172, 188, 664
Hpy8I GTNNAC 2 cut(s) 210, 355
HpyAV CCTTC 1 cut(s) 578
HpyCH4III ACNGT 3 cut(s) 94, 531, 599
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 3 cut(s) 235, 314, 541
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 332, 636
HpyF3I CTNAG 2 cut(s) 427, 626
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 8 cut(s) 227, 235, 284, 400, 466, 487, 545, 568
Kpn2I TCCGGA 1 cut(s) 663
KspAI GTTAAC 1 cut(s) 355
Kzo9I GATC 8 cut(s) 37, 111, 141, 239, 286, 305, 386, 502
LmnI GCTCC 3 cut(s) 15, 58, 666
MaeI CTAG 1 cut(s) 444
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 3 cut(s) 265, 593, 602
MalI GATC 8 cut(s) 39, 113, 143, 241, 288, 307, 388, 504
MboI GATC 8 cut(s) 37, 111, 141, 239, 286, 305, 386, 502
MboII GAAGA 7 cut(s) 211, 214, 300, 321, 415, 512, 580
MfeI CAATTG 1 cut(s) 271
MflI RGATCY 3 cut(s) 111, 305, 386
MhlI GDGCHC 3 cut(s) 187, 231, 627
MluCI AATT 1 cut(s) 271
MlyI GAGTC 1 cut(s) 599
MnlI CCTC 7 cut(s) 62, 102, 277, 428, 488, 541, 634
MroI TCCGGA 1 cut(s) 663
MroXI GAANNNNTTC 1 cut(s) 445
MseI TTAA 2 cut(s) 297, 354
MslI CAYNNNNRTG 1 cut(s) 600
MspA1I CMGCKG 4 cut(s) 124, 335, 431, 672
MspI CCGG 1 cut(s) 664
MspR9I CCNGG 1 cut(s) 509
MunI CAATTG 1 cut(s) 271
MvaI CCWGG 1 cut(s) 509
MwoI GCNNNNNNNGC 3 cut(s) 10, 332, 636
NdeII GATC 8 cut(s) 37, 111, 141, 239, 286, 305, 386, 502
NlaIII CATG 8 cut(s) 227, 235, 284, 400, 466, 487, 545, 568
NlaIV GGNNCC 2 cut(s) 86, 668
NmuCI GTSAC 2 cut(s) 593, 602
OliI CACNNNNGTG 1 cut(s) 600
PaqCI CACCTGC 2 cut(s) 9, 325
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PdmI GAANNNNTTC 1 cut(s) 445
PfeI GAWTC 3 cut(s) 25, 48, 175
PkrI GCNGC 1 cut(s) 671
PleI GAGTC 1 cut(s) 599
PpsI GAGTC 1 cut(s) 599
PpuMI RGGWCCY 1 cut(s) 84
Psp124BI GAGCTC 1 cut(s) 627
Psp5II RGGWCCY 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 507
PspGI CCWGG 1 cut(s) 507
PspN4I GGNNCC 2 cut(s) 86, 668
PspPI GGNCC 1 cut(s) 84
PspPPI RGGWCCY 1 cut(s) 84
PsrI GAACNNNNNNTAC 2 cut(s) 433, 465
PsuI RGATCY 3 cut(s) 111, 305, 386
PvuII CAGCTG 2 cut(s) 124, 431
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 600
SacI GAGCTC 1 cut(s) 627
SaqAI TTAA 2 cut(s) 297, 354
SatI GCNGC 1 cut(s) 670
Sau3AI GATC 8 cut(s) 37, 111, 141, 239, 286, 305, 386, 502
Sau96I GGNCC 1 cut(s) 84
SchI GAGTC 1 cut(s) 599
ScrFI CCNGG 1 cut(s) 509
SduI GDGCHC 3 cut(s) 187, 231, 627
SfcI CTRYAG 2 cut(s) 33, 93
SinI GGWCC 1 cut(s) 84
SmiMI CAYNNNNRTG 1 cut(s) 600
SmlI CTYRAG 2 cut(s) 53, 620
SmoI CTYRAG 2 cut(s) 53, 620
SpeI ACTAGT 1 cut(s) 443
Sse9I AATT 1 cut(s) 271
SsiI CCGC 4 cut(s) 13, 333, 591, 670
SspMI CTAG 1 cut(s) 444
SstI GAGCTC 1 cut(s) 627
StyD4I CCNGG 1 cut(s) 507
TaaI ACNGT 3 cut(s) 94, 531, 599
TaiI ACGT 1 cut(s) 159
TaqI TCGA 1 cut(s) 144
TasI AATT 1 cut(s) 271
TauI GCSGC 1 cut(s) 672
TfiI GAWTC 3 cut(s) 25, 48, 175
Tru1I TTAA 2 cut(s) 297, 354
Tru9I TTAA 2 cut(s) 297, 354
TscAI CASTG 1 cut(s) 534
TseFI GTSAC 2 cut(s) 593, 602
Tsp45I GTSAC 2 cut(s) 593, 602
TspDTI ATGAA 6 cut(s) 212, 407, 472, 479, 581, 597
TspGWI ACGGA 1 cut(s) 372
TspRI CASTG 1 cut(s) 534
VpaK11BI GGWCC 1 cut(s) 84
XmnI GAANNNNTTC 1 cut(s) 445
XspI CTAG 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.