MD11G1016300.v1.1

RING-type E3 ubiquitin transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0016299
Physical Location & Seq
Forward (+)
1305961 .. 1312783
6823 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1016300.v1.1.491

Sequence Viewer

Length: 3507 bp
ATGGCGTCGTCTTTGCAGGATCTTTTAGCAGAAGATGGATTTAGGAGAAAAAAATTGTTGAGCAAATCAAAGGCTTCCTCCTTCCACTCAGGTTCAACTACGCGTCATTTGGCTAATTCGGATCCACACAAGAGACATTCCATGTCAGGGGATAGAATTAGGACAGAGAAAACAAGGTCTGATGTGTCTCGGTTTGCTGTGAATAATGATCTTCCAACGGGTGATGGTGTTGCTGGTAGGAGACCATCCGTTGATGGAGGATCAAAGAAAGAAGTTAGGGATGGACTCGGAGAAACAGGTGCTACTAGGTTGAGGGAAGCTAGAAGTTTGAATAGAATTTTTCCGCGGAGTCTGCCACGAAATGAGATAGTTGAGGTTGAAGGTGAAGATTTTGAGAGATACAAGGACATATATTCGAACGAATTGTATAGCTCAGAAAAAAGAAAGGATAAGTATTTGATTGGAAGTATGGAAGACGATGGACTTGAAGAGAGCTCAAAGAAGGACACGAAGTTTGATAGGAGGAATGGCCACAGTTCAAACAAATATGTTCCTGGACGTACGAGTTTTAGTGACAGCAATAGACAAAGCAGGAAACTGCCAGAGACCTCACATGACAGATCAAGGAGAGATTCATCATATAGCAAAACTTCGGAAGATGTTCGCAGACAAAAGAGTGATAAAGTTTTACGGGCAGTTCCTGAACCTGCTCTTGATGAGATTGCAATCCAAGCCATTGTTTCCATTCTAAGTGGATGCATTAAGCAGTTTCTCAAAGATGAGAATTTCCGGCATGAACTCAGAGACAAATGTATCTCCTTCCTAAACTTTGTTGATCTGGAAGAAGGGAATGCCGAGAGCAGAATCATTGCCAGATTTGAACAGGCAATCGAAACAGTGGAAAAGGCAGCAGAGGAGTCAGCAAGTGAACGGGATTTAAAACGAGCTTCATTGCAGCTTAGTGTTATAACCGGGTTGAACAATGCCGATTTGAAAGATGGATTGACAGCCGGAGTTCCTAATTACAAACTGTCAGCTTGTGCTCATCTCTATCTCAGTGTGGTGTACAAGTTACTGAAGAAAGACCGTGTATCAGCAAAGCATCTTTTGCAAGTTTTTTGTGATACGCCCTTTCACACACGAATGACATTGTTGCCTGAATTATGGGATCAACTATTTCTTCCACATTTGACACATTTAAAGACGTGGTATGATCAGGAAGCTGATTCAATAGCGGATAGACAAAACAAGCCGAGGAAGCTGAAGCTTTTAGGAAAAATGTACAATGAAATGTTGGATTCTGGGACTTACCAATTTGCCGTTTACTATAAGGACTGGCTCACCGAAGGAGTTGAATCTCCTCCCACTCCTGCTATCCATATCCCATCTGTAGTATCTCTTCAGGAAGCTCAGCAGGGAAGTTCTGAAAGTCATTCTTCGGAAGCACCTAGTCCAGGCGGTTCACAGCTAATGGTCAGCAAAAAACTATACGATTCTGTGTTTAGCCGTGCAAGTAAACCTGATCCTAATGATACCGAGGATGATGGAGAGATGGAAAACTTGGATACTATTACGAGAAGTTCTGATGGTTCATTTGTTGTGAAACAAGTAACTCAGGACTCTGCCGAAAGAGTTCAATATCAGTACCACGACACTGAAGATGATTACTCTAAGAGTGCGCCGGAAGATGGATCCCTTTCTGTGTCATCGTCATGCTCTAGAACATTTTTGAAGGAAAATGGACTCTTCACGACAGAAGAGCAAAAATGGGGTTCTCTTGGAGTGAGTGATCTACCAGAAAGCAACCTAAATCATCAGTTCGGTGACATGTCTAGAGAAAACTCAGAAAGCCCCCGTACGCTGCATGCACAGGAGAATAAGGTCACCCTCAAAATCCATGTAAACTCCGTTTTTGAACAGAAGCACATGGAGGATTCCAGCGATCACAATTTATCTATGATATCGAATTTCAGTGAACCTTCGATTGCCAGTTCTATTGTAAACCCAATCAAAGCAAGGTCTTCGTTCGAAGATTTACATGGAAATTATTTTGAAGGAGTCACTTTTTCGGGCATTCCTCAGGACTTCATATGCCCTCTAAATGGACGGTTGTTTGAAGATCCAGTGACCCTAGAGACGGGTCAAACCTTTGAGCGTTTGGCCATCAAGGCGTGGTTTGATCAGGGAAACAGAACATGTCCGGTGACAGGAAAAGCTTTGGAATGTCTAGTGTTGCCTCTTCCTAACTCTATCTTAAAGCGCGTGATTCGTAGTTGGAAATCTGAACATTGTCGGAAACTCTTGGCTTTTGCCTCTCATGTAGTGGGGACCTTGGTGAGAGATGTGTCCAGTCACTGCGACGAGACTGCTATTTCCGTGCTAGAGCAGCTTCTCACTTGTTTCAGCAATGAGGAAAGGACAGAAAATGCCAAGCACCTGATCTCTCTTGGAGGCTTGCAGTTTCTTCTTCAGCGGTTTCATTATGGAAAAGTTGAAGAGAAATCGCGTGCAGCAGCATTACTGTCGTGTTGCATAGAAGCAGATGCAGATTGTAGGAATCAAATAGCAAGAGACATTAACAAACAGTATGTTATGGAGATGCTCCAAAGCCAGCAATTTAAAATAAGAACAAATGCAGTGTTGTTGTTGACGGAATTGATTTGCCTCAAGAGGAAGAAAGACGTCACAACATTTCTCAGTGGCTTGCAGATTGAGGGGATGGTGGATACAATGGATGTTCTGCTTGCGTGTCTCCAGAGTTCTCCAGCTAACCACAGACCCCTGGTTGCCGTCCTTTTGTTGCACGTAGATCTTCTGGTAGAGAGGAAGCTGTCGATGCCATTACATAGAGAAGAAGCTGTCGACGCCATTACAGAGGCTCTTGATTGCAGCCTAACTGATGAGAACGTCCAAAAGAATTGTTGCACAGCACTTCTTATCTTGGGAAGGTTTTTCTCTTGCTCCAGAAATTCATCACAAAGTTGGATCTTAAAGCAAGAAGATTGTAGTGGCAATACTGAAGTGAATTCACTCGACAACAAAGAAGACATTTCACTAGCTGATGACATGTCTCCATTGGATGAGCGAGAAAATTCCAGTGAAGATTGGTTGAGGAACTTAACAGTGTCACTACTCGGTTATGGAAAGAAGTCTTTTGTAGAAACCCTTTCAAAGTGTTTAGGATCCGAAAACTTGGAATTGATTAGAATGTGCCTAATCACCGTGGAATGGTTGAGCCGCGCACTTTCTTCACTGCCCGGTTCTGAGTTTCAGCTATCCAGCTTCTCATCTCTCATTTTTCCACTAAAACAATGTCTGAAGACCAGCGAGCAGGTTGAGCAGAAGATCCTTGCTTCAATGTCCATGCTCAACTTCAGCAAAATATCAGAATGCAGGGTGCTTTTAAGAGAAAACACAGAAGACATTGCAGTTCCTCTAGAAAACCTTGCTGAAGTAACTTGGAGTGCAAAACTACTACATGACATTATTTCTGAAGAAAATCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
U-box

Protein Analysis

1169

Amino Acids

131.4

Weight (kDa)

5.64

Isoelectric Point (pI)

53.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_LIN PF23568 242 - 463 2.2e-97 E3 ubiquitin-protein ligase LIN-like, ARM repeat
U-box PF04564 692 - 763 1.2e-11 U-box domain
ARM_LIN_C PF23628 796 - 1164 2.9e-132 Putative E3 ubiquitin-protein ligase LIN, ARM-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016299)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g44280
malus_domestica MD11G1016300.v1.1
prunus_persica Prupe.6G014500_v2.0.a1
pyrus_communis pycom11g01150
rosa_chinensis RchiOBHm_Chr5g0080651
rosa_laevigata RLG00000036879
rosa_multiflora Rmu_sc0002380.1_g000007 Rmu_sc0039404.1_g000001
rosa_roxburghii Rroxscaffold_1G00002750
rosa_rugosa Rorug05G0470900
rosa_samantha Rh5AG524200 Rh5BG546500 Rh5CG569700 Rh5DG556700
rosa_wichuraiana Rw5G048630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 968
AatII GACGTC 1 cut(s) 2685
Acc36I ACCTGC 2 cut(s) 715, 3322
AccI GTMKAC 1 cut(s) 2862
AccII CGCG 5 cut(s) 103, 346, 2262, 2506, 3240
AciI CCGC 6 cut(s) 344, 346, 1235, 1458, 2473, 3238
AcoI YGGCCR 2 cut(s) 529, 2160
AcsI RAATTY 6 cut(s) 336, 784, 1966, 2968, 3025, 3091
AcuI CTGAAG 9 cut(s) 1097, 1283, 1385, 1677, 2453, 3039, 3338, 3358, 3471
AcyI GRCGYC 3 cut(s) 5, 2682, 2865
AfaI GTAC 5 cut(s) 562, 1067, 1283, 1646, 1858
AfiI CCNNNNNNNGG 7 cut(s) 147, 1454, 1688, 2102, 2137, 2207, 3228
AflIII ACRYGT 4 cut(s) 101, 1827, 2195, 3066
AjiI CACGTC 1 cut(s) 1206
AjnI CCWGG 3 cut(s) 553, 1453, 2781
Alw21I GWGCWC 2 cut(s) 497, 1045
AlwNI CAGNNNCTG 2 cut(s) 701, 2355
AoxI GGCC 2 cut(s) 529, 2160
ApeKI GCWGC 7 cut(s) 908, 955, 1861, 2386, 2510, 2513, 2889
ApoI RAATTY 6 cut(s) 336, 784, 1966, 2968, 3025, 3091
ArsI GACNNNNNNTTYG 2 cut(s) 497, 529
Asp700I GAANNNNTTC 2 cut(s) 660, 1632
AspLEI GCGC 3 cut(s) 1681, 2262, 3242
AspS9I GGNCC 1 cut(s) 2328
AsuC2I CCSGG 2 cut(s) 973, 3258
AsuHPI GGTGA 8 cut(s) 233, 395, 1333, 1835, 1876, 2215, 2347, 3211
AsuII TTCGAA 2 cut(s) 416, 2028
AvaII GGWCC 1 cut(s) 2328
AxyI CCTNAGG 1 cut(s) 2079
BaeI ACNNNNGTAYC 2 cut(s) 796, 829
BalI TGGCCA 2 cut(s) 531, 2162
BamHI GGATCC 3 cut(s) 121, 1691, 3182
BanII GRGCYC 1 cut(s) 497
BarI GAAGNNNNNNTAC 2 cut(s) 1383, 1415
BbsI GAAGAC 5 cut(s) 480, 2013, 3051, 3326, 3426
Bbv12I GWGCWC 2 cut(s) 497, 1045
BbvI GCAGC 7 cut(s) 920, 967, 1848, 2398, 2522, 2525, 2901
BceAI ACGGC 3 cut(s) 1304, 1491, 2774
BcgI CGANNNNNNTGC 6 cut(s) 2004, 2038, 2348, 2382, 2505, 2539
BciT130I CCWGG 3 cut(s) 555, 1455, 2783
BciVI GTATCC 2 cut(s) 1558, 2719
BclI TGATCA 2 cut(s) 1213, 2179
BcnI CCSGG 2 cut(s) 973, 3258
BfmI CTRYAG 1 cut(s) 1389
BfuAI ACCTGC 2 cut(s) 715, 3322
BfuI GTATCC 2 cut(s) 1558, 2719
BglI GCCNNNNNGGC 1 cut(s) 2168
BglII AGATCT 1 cut(s) 2809
BisI GCNGC 8 cut(s) 909, 956, 1862, 2387, 2511, 2514, 2890, 3238
BlpI GCTNAGC 1 cut(s) 1410
BlsI GCNGC 8 cut(s) 910, 957, 1863, 2388, 2512, 2515, 2891, 3239
Bme1390I CCNGG 5 cut(s) 555, 973, 1455, 2783, 3258
Bme18I GGWCC 1 cut(s) 2328
BmgBI CACGTC 1 cut(s) 1206
BmgT120I GGNCC 1 cut(s) 2328
BmiI GGNNCC 4 cut(s) 123, 1693, 2329, 3184
BmrFI CCNGG 5 cut(s) 555, 973, 1455, 2783, 3258
BmsI GCATC 5 cut(s) 746, 1111, 2533, 2589, 2826
BpiI GAAGAC 5 cut(s) 480, 2013, 3051, 3326, 3426
BpmI CTGGAG 3 cut(s) 2738, 2748, 2947
Bpu1102I GCTNAGC 1 cut(s) 1410
Bpu14I TTCGAA 2 cut(s) 416, 2028
BpuEI CTTGAG 1 cut(s) 2651
BpuMI CCSGG 2 cut(s) 973, 3258
BsaAI YACGTR 1 cut(s) 2806
BsaBI GATNNNNATC 1 cut(s) 725
BsaHI GRCGYC 3 cut(s) 5, 2682, 2865
BsaI GGTCTC 2 cut(s) 235, 599
BsaJI CCNNGG 6 cut(s) 344, 1253, 1536, 2331, 2781, 3222
BsaWI WCCGGW 1 cut(s) 2200
Bsc4I CCNNNNNNNGG 7 cut(s) 147, 1454, 1688, 2102, 2137, 2207, 3228
Bse1I ACTGG 5 cut(s) 1340, 1989, 2123, 2349, 3096
Bse21I CCTNAGG 1 cut(s) 2079
Bse3DI GCAATG 4 cut(s) 867, 950, 2413, 3423
Bse8I GATNNNNATC 1 cut(s) 725
BseBI CCWGG 3 cut(s) 555, 1455, 2783
BseDI CCNNGG 6 cut(s) 344, 1253, 1536, 2331, 2781, 3222
BseGI GGATG 7 cut(s) 245, 286, 761, 1546, 2724, 2740, 3085
BseJI GATNNNNATC 1 cut(s) 725
BseLI CCNNNNNNNGG 7 cut(s) 147, 1454, 1688, 2102, 2137, 2207, 3228
BseMI GCAATG 4 cut(s) 867, 950, 2413, 3423
BseNI ACTGG 5 cut(s) 1340, 1989, 2123, 2349, 3096
BseRI GAGGAG 2 cut(s) 929, 1350
BseXI GCAGC 7 cut(s) 920, 967, 1848, 2398, 2522, 2525, 2901
BsgI GTGCAG 1 cut(s) 2529
Bsh1236I CGCG 5 cut(s) 103, 346, 2262, 2506, 3240
BshFI GGCC 2 cut(s) 531, 2162
BsiHKAI GWGCWC 2 cut(s) 497, 1045
BsiSI CCGG 6 cut(s) 790, 972, 1011, 1682, 2201, 3258
BsiWI CGTACG 2 cut(s) 560, 1856
BslFI GGGAC 2 cut(s) 1318, 2341
BslI CCNNNNNNNGG 7 cut(s) 147, 1454, 1688, 2102, 2137, 2207, 3228
BsmBI CGTCTC 1 cut(s) 2129
BsmFI GGGAC 2 cut(s) 1318, 2341
BsmI GAATGC 3 cut(s) 856, 2073, 3395
BsnI GGCC 2 cut(s) 531, 2162
Bso31I GGTCTC 2 cut(s) 235, 599
Bsp119I TTCGAA 2 cut(s) 416, 2028
Bsp1286I GDGCHC 2 cut(s) 497, 1045
Bsp1407I TGTACA 2 cut(s) 1065, 1281
Bsp1720I GCTNAGC 1 cut(s) 1410
BspACI CCGC 6 cut(s) 344, 346, 1235, 1458, 2473, 3238
BspANI GGCC 2 cut(s) 531, 2162
BspFNI CGCG 5 cut(s) 103, 346, 2262, 2506, 3240
BspLI GGNNCC 4 cut(s) 123, 1693, 2329, 3184
BspMI ACCTGC 2 cut(s) 715, 3322
BspQI GCTCTTC 1 cut(s) 1752
BspT104I TTCGAA 2 cut(s) 416, 2028
BspTNI GGTCTC 2 cut(s) 235, 599
BsrDI GCAATG 4 cut(s) 867, 950, 2413, 3423
BsrGI TGTACA 2 cut(s) 1065, 1281
BsrI ACTGG 5 cut(s) 1340, 1989, 2123, 2349, 3096
BssECI CCNNGG 6 cut(s) 344, 1253, 1536, 2331, 2781, 3222
BssNI GRCGYC 3 cut(s) 5, 2682, 2865
BssT1I CCWWGG 1 cut(s) 2331
Bst2UI CCWGG 3 cut(s) 555, 1455, 2783
Bst4CI ACNGT 9 cut(s) 536, 898, 1032, 1088, 2109, 2523, 2586, 3124, 3223
Bst6I CTCTTC 6 cut(s) 483, 1404, 1751, 1752, 2244, 2490
BstACI GRCGYC 3 cut(s) 5, 2682, 2865
BstAPI GCANNNNNTGC 1 cut(s) 1108
BstAUI TGTACA 2 cut(s) 1065, 1281
BstBAI YACGTR 1 cut(s) 2806
BstBI TTCGAA 2 cut(s) 416, 2028
BstC8I GCNNGC 7 cut(s) 1866, 2456, 2508, 2612, 2705, 2745, 3329
BstDSI CCRYGG 2 cut(s) 344, 3222
BstEII GGTNACC 1 cut(s) 1882
BstENI CCTNNNNNAGG 1 cut(s) 1452
BstF5I GGATG 7 cut(s) 245, 286, 761, 1546, 2724, 2740, 3085
BstFNI CGCG 5 cut(s) 103, 346, 2262, 2506, 3240
BstHHI GCGC 3 cut(s) 1681, 2262, 3242
BstMWI GCNNNNNNNGC 9 cut(s) 352, 731, 1108, 1258, 2168, 2386, 2836, 2864, 3337
BstNI CCWGG 3 cut(s) 555, 1455, 2783
BstNSI RCATGY 4 cut(s) 1831, 1868, 2199, 3070
BstPI GGTNACC 1 cut(s) 1882
BstSCI CCNGG 5 cut(s) 553, 971, 1453, 2781, 3256
BstSFI CTRYAG 1 cut(s) 1389
BstUI CGCG 5 cut(s) 103, 346, 2262, 2506, 3240
BstV1I GCAGC 7 cut(s) 920, 967, 1848, 2398, 2522, 2525, 2901
BstV2I GAAGAC 5 cut(s) 480, 2013, 3051, 3326, 3426
BstX2I RGATCY 8 cut(s) 19, 121, 1691, 2119, 2809, 2985, 3182, 3345
BstYI RGATCY 8 cut(s) 19, 121, 1691, 2119, 2809, 2985, 3182, 3345
Bsu36I CCTNAGG 1 cut(s) 2079
BsuI GTATCC 2 cut(s) 1558, 2719
BsuRI GGCC 2 cut(s) 531, 2162
BtgI CCRYGG 2 cut(s) 344, 3222
BtrI CACGTC 1 cut(s) 1206
BtsCI GGATG 7 cut(s) 245, 286, 761, 1546, 2724, 2740, 3085
BtsI GCAGTG 3 cut(s) 2353, 2643, 3251
BveI ACCTGC 2 cut(s) 715, 3322
Cac8I GCNNGC 7 cut(s) 1866, 2456, 2508, 2612, 2705, 2745, 3329
CaiI CAGNNNCTG 2 cut(s) 701, 2355
CfoI GCGC 3 cut(s) 1681, 2262, 3242
Cfr13I GGNCC 1 cut(s) 2328
Cfr42I CCGCGG 1 cut(s) 347
CseI GACGC 2 cut(s) 92, 2873
Csp6I GTAC 5 cut(s) 561, 1066, 1282, 1645, 1857
CviQI GTAC 5 cut(s) 561, 1066, 1282, 1645, 1857
DraI TTTAAA 3 cut(s) 939, 1200, 2620
EaeI YGGCCR 2 cut(s) 529, 2160
Eam1104I CTCTTC 6 cut(s) 483, 1404, 1751, 1752, 2244, 2490
EarI CTCTTC 6 cut(s) 483, 1404, 1751, 1752, 2244, 2490
Ecl136II GAGCTC 1 cut(s) 495
Eco130I CCWWGG 1 cut(s) 2331
Eco24I GRGCYC 1 cut(s) 497
Eco31I GGTCTC 2 cut(s) 235, 599
Eco32I GATATC 1 cut(s) 1962
Eco47I GGWCC 1 cut(s) 2328
Eco53kI GAGCTC 1 cut(s) 495
Eco57I CTGAAG 9 cut(s) 1097, 1283, 1385, 1677, 2453, 3039, 3338, 3358, 3471
Eco81I CCTNAGG 1 cut(s) 2079
Eco91I GGTNACC 1 cut(s) 1882
EcoICRI GAGCTC 1 cut(s) 495
EcoNI CCTNNNNNAGG 1 cut(s) 1452
EcoO109I RGGNCCY 1 cut(s) 2328
EcoO65I GGTNACC 1 cut(s) 1882
EcoRI GAATTC 1 cut(s) 3025
EcoRII CCWGG 3 cut(s) 553, 1453, 2781
EcoRV GATATC 1 cut(s) 1962
EcoT14I CCWWGG 1 cut(s) 2331
EcoT22I ATGCAT 1 cut(s) 761
EcoT38I GRGCYC 1 cut(s) 497
ErhI CCWWGG 1 cut(s) 2331
Esp3I CGTCTC 1 cut(s) 2129
FalI AAGNNNNNCTT 2 cut(s) 1420, 1452
FaqI GGGAC 2 cut(s) 1318, 2341
FauNDI CATATG 1 cut(s) 2090
FbaI TGATCA 2 cut(s) 1213, 2179
FblI GTMKAC 1 cut(s) 2862
Fnu4HI GCNGC 8 cut(s) 909, 956, 1862, 2387, 2511, 2514, 2890, 3238
FokI GGATG 7 cut(s) 232, 293, 768, 1553, 2731, 2747, 3092
FriOI GRGCYC 1 cut(s) 497
Fsp4HI GCNGC 8 cut(s) 909, 956, 1862, 2387, 2511, 2514, 2890, 3238
GlaI GCGC 3 cut(s) 1680, 2261, 3241
GluI GCNGC 8 cut(s) 909, 956, 1862, 2387, 2511, 2514, 2890, 3238
GsuI CTGGAG 3 cut(s) 2738, 2748, 2947
HaeIII GGCC 2 cut(s) 531, 2162
HapII CCGG 6 cut(s) 790, 972, 1011, 1682, 2201, 3258
HgaI GACGC 2 cut(s) 92, 2873
HhaI GCGC 3 cut(s) 1681, 2262, 3242
Hin1I GRCGYC 3 cut(s) 5, 2682, 2865
Hin6I GCGC 3 cut(s) 1679, 2260, 3240
HinP1I GCGC 3 cut(s) 1679, 2260, 3240
HincII GTYRAC 2 cut(s) 2649, 2863
HindII GTYRAC 2 cut(s) 2649, 2863
HindIII AAGCTT 2 cut(s) 1265, 2214
HpaII CCGG 6 cut(s) 790, 972, 1011, 1682, 2201, 3258
HphI GGTGA 8 cut(s) 233, 395, 1333, 1835, 1876, 2215, 2347, 3211
Hpy99I CGWCG 3 cut(s) 10, 2363, 2867
HpyCH4III ACNGT 9 cut(s) 536, 898, 1032, 1088, 2109, 2523, 2586, 3124, 3223
HpyCH4IV ACGT 5 cut(s) 559, 1205, 2682, 2805, 2907
HpyF10VI GCNNNNNNNGC 9 cut(s) 352, 731, 1108, 1258, 2168, 2386, 2836, 2864, 3337
HpySE526I ACGT 5 cut(s) 559, 1205, 2682, 2805, 2907
Hsp92I GRCGYC 3 cut(s) 5, 2682, 2865
HspAI GCGC 3 cut(s) 1679, 2260, 3240
Ksp22I TGATCA 2 cut(s) 1213, 2179
KspI CCGCGG 1 cut(s) 347
LguI GCTCTTC 1 cut(s) 1752
LmnI GCTCC 2 cut(s) 2607, 2966
Lsp1109I GCAGC 7 cut(s) 920, 967, 1848, 2398, 2522, 2525, 2901
LweI GCATC 5 cut(s) 746, 1111, 2533, 2589, 2826
MaeII ACGT 5 cut(s) 559, 1205, 2682, 2805, 2907
MflI RGATCY 8 cut(s) 19, 121, 1691, 2119, 2809, 2985, 3182, 3345
MhlI GDGCHC 2 cut(s) 497, 1045
MlsI TGGCCA 2 cut(s) 531, 2162
MluI ACGCGT 1 cut(s) 101
MluNI TGGCCA 2 cut(s) 531, 2162
MlyI GAGTC 6 cut(s) 279, 358, 926, 1613, 1737, 2067
MmeI TCCRAC 5 cut(s) 239, 1275, 2255, 2273, 2963
Mox20I TGGCCA 2 cut(s) 531, 2162
Mph1103I ATGCAT 1 cut(s) 761
MroXI GAANNNNTTC 2 cut(s) 660, 1632
MscI TGGCCA 2 cut(s) 531, 2162
MslI CAYNNNNRTG 2 cut(s) 1142, 1711
Msp20I TGGCCA 2 cut(s) 531, 2162
MspA1I CMGCKG 2 cut(s) 346, 2473
MspI CCGG 6 cut(s) 790, 972, 1011, 1682, 2201, 3258
MspR9I CCNGG 5 cut(s) 555, 973, 1455, 2783, 3258
Mva1269I GAATGC 3 cut(s) 856, 2073, 3395
MvaI CCWGG 3 cut(s) 555, 1455, 2783
MvnI CGCG 5 cut(s) 103, 346, 2262, 2506, 3240
MwoI GCNNNNNNNGC 9 cut(s) 352, 731, 1108, 1258, 2168, 2386, 2836, 2864, 3337
NciI CCSGG 2 cut(s) 973, 3258
NdeI CATATG 1 cut(s) 2090
NlaIV GGNNCC 4 cut(s) 123, 1693, 2329, 3184
NmeAIII GCCGAG 2 cut(s) 880, 1278
NmuCI GTSAC 9 cut(s) 572, 1823, 1882, 2059, 2125, 2203, 2351, 2683, 3126
NsiI ATGCAT 1 cut(s) 761
NspI RCATGY 4 cut(s) 1831, 1868, 2199, 3070
NspV TTCGAA 2 cut(s) 416, 2028
PaeI GCATGC 1 cut(s) 1868
PciI ACATGT 3 cut(s) 1827, 2195, 3066
PciSI GCTCTTC 1 cut(s) 1752
PctI GAATGC 3 cut(s) 856, 2073, 3395
PdmI GAANNNNTTC 2 cut(s) 660, 1632
PfeI GAWTC 9 cut(s) 632, 864, 1226, 1298, 1355, 1493, 1934, 2266, 2557
Pfl23II CGTACG 2 cut(s) 560, 1856
PfoI TCCNGGA 1 cut(s) 553
PkrI GCNGC 8 cut(s) 910, 957, 1863, 2388, 2512, 2515, 2891, 3239
PleI GAGTC 6 cut(s) 279, 357, 925, 1613, 1737, 2066
PpsI GAGTC 6 cut(s) 279, 357, 925, 1613, 1737, 2066
Ppu21I YACGTR 1 cut(s) 2806
PpuMI RGGWCCY 1 cut(s) 2328
PscI ACATGT 3 cut(s) 1827, 2195, 3066
PsiI TTATAA 1 cut(s) 968
Psp124BI GAGCTC 1 cut(s) 497
Psp5II RGGWCCY 1 cut(s) 2328
Psp6I CCWGG 3 cut(s) 553, 1453, 2781
PspEI GGTNACC 1 cut(s) 1882
PspGI CCWGG 3 cut(s) 553, 1453, 2781
PspLI CGTACG 2 cut(s) 560, 1856
PspN4I GGNNCC 4 cut(s) 123, 1693, 2329, 3184
PspPI GGNCC 1 cut(s) 2328
PspPPI RGGWCCY 1 cut(s) 2328
PstNI CAGNNNCTG 2 cut(s) 701, 2355
PsuI RGATCY 8 cut(s) 19, 121, 1691, 2119, 2809, 2985, 3182, 3345
RsaI GTAC 5 cut(s) 562, 1067, 1283, 1646, 1858
RsaNI GTAC 5 cut(s) 561, 1066, 1282, 1645, 1857
RseI CAYNNNNRTG 2 cut(s) 1142, 1711
SacI GAGCTC 1 cut(s) 497
SacII CCGCGG 1 cut(s) 347
SalI GTCGAC 1 cut(s) 2861
SapI GCTCTTC 1 cut(s) 1752
SatI GCNGC 8 cut(s) 909, 956, 1862, 2387, 2511, 2514, 2890, 3238
Sau96I GGNCC 1 cut(s) 2328
SchI GAGTC 6 cut(s) 279, 358, 926, 1613, 1737, 2067
ScrFI CCNGG 5 cut(s) 555, 973, 1455, 2783, 3258
SduI GDGCHC 2 cut(s) 497, 1045
SfaNI GCATC 5 cut(s) 746, 1111, 2533, 2589, 2826
SfcI CTRYAG 1 cut(s) 1389
Sfr303I CCGCGG 1 cut(s) 347
SfuI TTCGAA 2 cut(s) 416, 2028
SgrBI CCGCGG 1 cut(s) 347
SinI GGWCC 1 cut(s) 2328
SmiMI CAYNNNNRTG 2 cut(s) 1142, 1711
SmlI CTYRAG 1 cut(s) 2666
SmoI CTYRAG 1 cut(s) 2666
SphI GCATGC 1 cut(s) 1868
SsiI CCGC 6 cut(s) 344, 346, 1235, 1458, 2473, 3238
SstI GAGCTC 1 cut(s) 497
StyD4I CCNGG 5 cut(s) 553, 971, 1453, 2781, 3256
StyI CCWWGG 1 cut(s) 2331
TaaI ACNGT 9 cut(s) 536, 898, 1032, 1088, 2109, 2523, 2586, 3124, 3223
TaiI ACGT 5 cut(s) 562, 1208, 2685, 2808, 2910
TaqI TCGA 8 cut(s) 416, 891, 1964, 1982, 2028, 2834, 2862, 3033
TatI WGTACW 2 cut(s) 1065, 1281
TauI GCSGC 1 cut(s) 3240
TfiI GAWTC 9 cut(s) 632, 864, 1226, 1298, 1355, 1493, 1934, 2266, 2557
TseFI GTSAC 9 cut(s) 572, 1823, 1882, 2059, 2125, 2203, 2351, 2683, 3126
TseI GCWGC 7 cut(s) 908, 955, 1861, 2386, 2510, 2513, 2889
Tsp45I GTSAC 9 cut(s) 572, 1823, 1882, 2059, 2125, 2203, 2351, 2683, 3126
TspDTI ATGAA 8 cut(s) 624, 810, 939, 1302, 1581, 2077, 2468, 2961
TspGWI ACGGA 4 cut(s) 238, 1897, 2365, 2666
VpaK11BI GGWCC 1 cut(s) 2328
XagI CCTNNNNNAGG 1 cut(s) 1452
XapI RAATTY 6 cut(s) 336, 784, 1966, 2968, 3025, 3091
XbaI TCTAGA 3 cut(s) 1718, 1832, 3436
XceI RCATGY 4 cut(s) 1831, 1868, 2199, 3070
XmiI GTMKAC 1 cut(s) 2862
XmnI GAANNNNTTC 2 cut(s) 660, 1632
ZraI GACGTC 1 cut(s) 2683
Zsp2I ATGCAT 1 cut(s) 761
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.