RING-type E3 ubiquitin transferase
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g44280 |
| malus_domestica | MD11G1016300.v1.1 |
| prunus_persica | Prupe.6G014500_v2.0.a1 |
| pyrus_communis | pycom11g01150 |
| rosa_chinensis | RchiOBHm_Chr5g0080651 |
| rosa_laevigata | RLG00000036879 |
| rosa_multiflora | Rmu_sc0002380.1_g000007 Rmu_sc0039404.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00002750 |
| rosa_rugosa | Rorug05G0470900 |
| rosa_samantha | Rh5AG524200 Rh5BG546500 Rh5CG569700 Rh5DG556700 |
| rosa_wichuraiana | Rw5G048630 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 919 |
| AccB1I | GGYRCC | 1 cut(s) | 1921 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 471, 525 |
| AccBSI | CCGCTC | 1 cut(s) | 2263 |
| AccI | GTMKAC | 1 cut(s) | 334 |
| AccII | CGCG | 1 cut(s) | 1710 |
| AccIII | TCCGGA | 1 cut(s) | 993 |
| AciI | CCGC | 6 cut(s) | 127, 360, 868, 1664, 1708, 2263 |
| AclWI | GGATC | 6 cut(s) | 316, 570, 1952, 2222, 2448, 2461 |
| AcoI | YGGCCR | 3 cut(s) | 1705, 2248, 2862 |
| AcsI | RAATTY | 8 cut(s) | 1892, 1995, 2101, 2137, 2353, 3160, 3223, 3477 |
| AcuI | CTGAAG | 7 cut(s) | 1301, 1487, 1623, 2696, 3458, 3470, 3490 |
| AcvI | CACGTG | 1 cut(s) | 2615 |
| AfaI | GTAC | 6 cut(s) | 238, 1487, 1820, 1881, 2343, 3248 |
| AfeI | AGCGCT | 1 cut(s) | 3063 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 471, 525, 1264, 1823, 2210, 2262, 2315, 2904 |
| AflIII | ACRYGT | 3 cut(s) | 763, 2303, 2614 |
| AjiI | CACGTC | 1 cut(s) | 764 |
| AjnI | CCWGG | 4 cut(s) | 1080, 1654, 2187, 2910 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 160, 192 |
| Alw21I | GWGCWC | 5 cut(s) | 815, 1249, 3376, 3465, 3474 |
| Alw26I | GTCTC | 6 cut(s) | 60, 166, 1845, 1944, 2237, 3498 |
| AlwI | GGATC | 6 cut(s) | 316, 570, 1952, 2222, 2448, 2461 |
| Aor13HI | TCCGGA | 1 cut(s) | 993 |
| Aor51HI | AGCGCT | 1 cut(s) | 3063 |
| AoxI | GGCC | 7 cut(s) | 936, 1454, 1705, 2248, 2862, 2906, 3524 |
| ApoI | RAATTY | 8 cut(s) | 1892, 1995, 2101, 2137, 2353, 3160, 3223, 3477 |
| AspLEI | GCGC | 2 cut(s) | 1712, 3064 |
| AspS9I | GGNCC | 6 cut(s) | 64, 1454, 1661, 2436, 2907, 3525 |
| AsuC2I | CCSGG | 1 cut(s) | 1617 |
| AsuHPI | GGTGA | 9 cut(s) | 30, 140, 257, 272, 287, 1323, 1838, 2003, 2863 |
| AsuII | TTCGAA | 1 cut(s) | 2099 |
| AsuNHI | GCTAGC | 1 cut(s) | 410 |
| AvaII | GGWCC | 3 cut(s) | 64, 1661, 2436 |
| AxyI | CCTNAGG | 1 cut(s) | 2440 |
| BalI | TGGCCA | 2 cut(s) | 2250, 2864 |
| BamHI | GGATCC | 1 cut(s) | 2453 |
| BanI | GGYRCC | 1 cut(s) | 1921 |
| BanII | GRGCYC | 1 cut(s) | 815 |
| BbrPI | CACGTG | 1 cut(s) | 2615 |
| BbsI | GAAGAC | 1 cut(s) | 3183 |
| Bbv12I | GWGCWC | 5 cut(s) | 815, 1249, 3376, 3465, 3474 |
| BbvCI | CCTCAGC | 1 cut(s) | 1116 |
| BccI | CCATC | 6 cut(s) | 74, 1586, 1739, 1781, 2279, 2842 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1339, 1373, 3033, 3067 |
| BciT130I | CCWGG | 4 cut(s) | 1082, 1656, 2189, 2912 |
| BciVI | GTATCC | 1 cut(s) | 3263 |
| BclI | TGATCA | 2 cut(s) | 1039, 1417 |
| BcnI | CCSGG | 1 cut(s) | 1617 |
| BcoDI | GTCTC | 6 cut(s) | 60, 166, 1845, 1944, 2237, 3498 |
| BfmI | CTRYAG | 1 cut(s) | 3354 |
| BfoI | RGCGCY | 1 cut(s) | 3065 |
| BfuAI | ACCTGC | 1 cut(s) | 919 |
| BfuI | GTATCC | 1 cut(s) | 3263 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2276 |
| BglII | AGATCT | 1 cut(s) | 1138 |
| Bme1390I | CCNGG | 5 cut(s) | 1082, 1617, 1656, 2189, 2912 |
| Bme18I | GGWCC | 3 cut(s) | 64, 1661, 2436 |
| BmgBI | CACGTC | 1 cut(s) | 764 |
| BmgT120I | GGNCC | 6 cut(s) | 64, 1454, 1661, 2436, 2907, 3525 |
| BmiI | GGNNCC | 5 cut(s) | 1923, 2437, 2455, 2909, 3527 |
| BmrFI | CCNGG | 5 cut(s) | 1082, 1617, 1656, 2189, 2912 |
| BmtI | GCTAGC | 1 cut(s) | 414 |
| BoxI | GACNNNNGTC | 1 cut(s) | 510 |
| BpiI | GAAGAC | 1 cut(s) | 3183 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 264, 296 |
| BpmI | CTGGAG | 1 cut(s) | 80 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1116, 1926 |
| Bpu14I | TTCGAA | 1 cut(s) | 2099 |
| BpuEI | CTTGAG | 1 cut(s) | 2946 |
| BpuMI | CCSGG | 1 cut(s) | 1617 |
| Bsa29I | ATCGAT | 1 cut(s) | 1956 |
| BsaAI | YACGTR | 1 cut(s) | 2615 |
| BsaBI | GATNNNNATC | 2 cut(s) | 225, 1210 |
| BsaJI | CCNNGG | 5 cut(s) | 939, 1457, 2187, 2910, 3265 |
| BsaWI | WCCGGW | 2 cut(s) | 993, 3518 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 471, 525, 1264, 1823, 2210, 2262, 2315, 2904 |
| Bse1I | ACTGG | 7 cut(s) | 465, 519, 670, 2124, 2231, 2251, 2833 |
| Bse21I | CCTNAGG | 1 cut(s) | 2440 |
| Bse3DI | GCAATG | 2 cut(s) | 1098, 1113 |
| Bse8I | GATNNNNATC | 2 cut(s) | 225, 1210 |
| BseAI | TCCGGA | 1 cut(s) | 993 |
| BseBI | CCWGG | 4 cut(s) | 1082, 1656, 2189, 2912 |
| BseCI | ATCGAT | 1 cut(s) | 1956 |
| BseDI | CCNNGG | 5 cut(s) | 939, 1457, 2187, 2910, 3265 |
| BseGI | GGATG | 6 cut(s) | 895, 1578, 2564, 2853, 3217, 3345 |
| BseJI | GATNNNNATC | 2 cut(s) | 225, 1210 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 471, 525, 1264, 1823, 2210, 2262, 2315, 2904 |
| BseMI | GCAATG | 2 cut(s) | 1098, 1113 |
| BseMII | CTCAG | 7 cut(s) | 567, 1050, 1107, 1273, 1886, 1917, 2454 |
| BseNI | ACTGG | 7 cut(s) | 465, 519, 670, 2124, 2231, 2251, 2833 |
| BseRI | GAGGAG | 5 cut(s) | 223, 731, 998, 1001, 1133 |
| Bsh1236I | CGCG | 1 cut(s) | 1710 |
| BshFI | GGCC | 7 cut(s) | 938, 1456, 1707, 2250, 2864, 2908, 3526 |
| BshNI | GGYRCC | 1 cut(s) | 1921 |
| BshVI | ATCGAT | 1 cut(s) | 1956 |
| BsiHKAI | GWGCWC | 5 cut(s) | 815, 1249, 3376, 3465, 3474 |
| BsiSI | CCGG | 4 cut(s) | 569, 994, 1616, 3519 |
| BslFI | GGGAC | 3 cut(s) | 1385, 1522, 2449 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 471, 525, 1264, 1823, 2210, 2262, 2315, 2904 |
| BsmAI | GTCTC | 6 cut(s) | 60, 166, 1845, 1944, 2237, 3498 |
| BsmBI | CGTCTC | 1 cut(s) | 60 |
| BsmFI | GGGAC | 3 cut(s) | 1385, 1522, 2449 |
| BsmI | GAATGC | 2 cut(s) | 1569, 3084 |
| BsnI | GGCC | 7 cut(s) | 938, 1456, 1707, 2250, 2864, 2908, 3526 |
| Bsp119I | TTCGAA | 1 cut(s) | 2099 |
| Bsp1286I | GDGCHC | 5 cut(s) | 815, 1249, 3376, 3465, 3474 |
| Bsp13I | TCCGGA | 1 cut(s) | 993 |
| Bsp1407I | TGTACA | 1 cut(s) | 1485 |
| Bsp19I | CCATGG | 1 cut(s) | 939 |
| BspACI | CCGC | 6 cut(s) | 127, 360, 868, 1664, 1708, 2263 |
| BspANI | GGCC | 7 cut(s) | 938, 1456, 1707, 2250, 2864, 2908, 3526 |
| BspCNI | CTCAG | 7 cut(s) | 568, 1051, 1108, 1272, 1885, 1918, 2453 |
| BspDI | ATCGAT | 1 cut(s) | 1956 |
| BspEI | TCCGGA | 1 cut(s) | 993 |
| BspFNI | CGCG | 1 cut(s) | 1710 |
| BspHI | TCATGA | 1 cut(s) | 817 |
| BspLI | GGNNCC | 5 cut(s) | 1923, 2437, 2455, 2909, 3527 |
| BspMAI | CTGCAG | 1 cut(s) | 3358 |
| BspMI | ACCTGC | 1 cut(s) | 919 |
| BspOI | GCTAGC | 1 cut(s) | 414 |
| BspPI | GGATC | 6 cut(s) | 316, 570, 1952, 2222, 2448, 2461 |
| BspQI | GCTCTTC | 2 cut(s) | 1044, 1141 |
| BspT104I | TTCGAA | 1 cut(s) | 2099 |
| BspT107I | GGYRCC | 1 cut(s) | 1921 |
| BsrBI | CCGCTC | 1 cut(s) | 2263 |
| BsrDI | GCAATG | 2 cut(s) | 1098, 1113 |
| BsrGI | TGTACA | 1 cut(s) | 1485 |
| BsrI | ACTGG | 7 cut(s) | 465, 519, 670, 2124, 2231, 2251, 2833 |
| BssECI | CCNNGG | 5 cut(s) | 939, 1457, 2187, 2910, 3265 |
| BssT1I | CCWWGG | 3 cut(s) | 939, 1457, 3265 |
| Bst2UI | CCWGG | 4 cut(s) | 1082, 1656, 2189, 2912 |
| Bst6I | CTCTTC | 8 cut(s) | 283, 323, 485, 1044, 1141, 1605, 2598, 2771 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 1112, 1312, 2630, 2996 |
| BstAUI | TGTACA | 1 cut(s) | 1485 |
| BstBAI | YACGTR | 1 cut(s) | 2615 |
| BstBI | TTCGAA | 1 cut(s) | 2099 |
| BstC8I | GCNNGC | 8 cut(s) | 125, 412, 807, 811, 1056, 2564, 2677, 2834 |
| BstDSI | CCRYGG | 1 cut(s) | 939 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2313 |
| BstF5I | GGATG | 6 cut(s) | 895, 1578, 2564, 2853, 3217, 3345 |
| BstFNI | CGCG | 1 cut(s) | 1710 |
| BstH2I | RGCGCY | 1 cut(s) | 3065 |
| BstHHI | GCGC | 2 cut(s) | 1712, 3064 |
| BstMAI | GTCTC | 6 cut(s) | 60, 166, 1845, 1944, 2237, 3498 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 935, 1112, 1312, 1612, 2276, 2494, 2630, 2996, 3469 |
| BstNI | CCWGG | 4 cut(s) | 1082, 1656, 2189, 2912 |
| BstNSI | RCATGY | 2 cut(s) | 1058, 2307 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 510 |
| BstSCI | CCNGG | 5 cut(s) | 1080, 1615, 1654, 2187, 2910 |
| BstSFI | CTRYAG | 1 cut(s) | 3354 |
| BstUI | CGCG | 1 cut(s) | 1710 |
| BstV2I | GAAGAC | 1 cut(s) | 3183 |
| BstX2I | RGATCY | 3 cut(s) | 1138, 2227, 2453 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 758 |
| BstYI | RGATCY | 3 cut(s) | 1138, 2227, 2453 |
| Bsu15I | ATCGAT | 1 cut(s) | 1956 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2440 |
| BsuI | GTATCC | 1 cut(s) | 3263 |
| BsuRI | GGCC | 7 cut(s) | 938, 1456, 1707, 2250, 2864, 2908, 3526 |
| BsuTUI | ATCGAT | 1 cut(s) | 1956 |
| BtgI | CCRYGG | 1 cut(s) | 939 |
| BtrI | CACGTC | 1 cut(s) | 764 |
| BtsCI | GGATG | 6 cut(s) | 895, 1578, 2564, 2853, 3217, 3345 |
| BtsI | GCAGTG | 3 cut(s) | 1704, 2751, 3351 |
| BveI | ACCTGC | 1 cut(s) | 919 |
| Cac8I | GCNNGC | 8 cut(s) | 125, 412, 807, 811, 1056, 2564, 2677, 2834 |
| CciI | TCATGA | 1 cut(s) | 817 |
| CfoI | GCGC | 2 cut(s) | 1712, 3064 |
| Cfr13I | GGNCC | 6 cut(s) | 64, 1454, 1661, 2436, 2907, 3525 |
| ClaI | ATCGAT | 1 cut(s) | 1956 |
| Csp6I | GTAC | 6 cut(s) | 237, 1486, 1819, 1880, 2342, 3247 |
| CviQI | GTAC | 6 cut(s) | 237, 1486, 1819, 1880, 2342, 3247 |
| DraI | TTTAAA | 3 cut(s) | 381, 435, 1404 |
| EaeI | YGGCCR | 3 cut(s) | 1705, 2248, 2862 |
| Eam1104I | CTCTTC | 8 cut(s) | 283, 323, 485, 1044, 1141, 1605, 2598, 2771 |
| EarI | CTCTTC | 8 cut(s) | 283, 323, 485, 1044, 1141, 1605, 2598, 2771 |
| Ecl136II | GAGCTC | 1 cut(s) | 813 |
| Eco130I | CCWWGG | 3 cut(s) | 939, 1457, 3265 |
| Eco24I | GRGCYC | 1 cut(s) | 815 |
| Eco32I | GATATC | 1 cut(s) | 36 |
| Eco47I | GGWCC | 3 cut(s) | 64, 1661, 2436 |
| Eco47III | AGCGCT | 1 cut(s) | 3063 |
| Eco53kI | GAGCTC | 1 cut(s) | 813 |
| Eco57I | CTGAAG | 7 cut(s) | 1301, 1487, 1623, 2696, 3458, 3470, 3490 |
| Eco72I | CACGTG | 1 cut(s) | 2615 |
| Eco81I | CCTNAGG | 1 cut(s) | 2440 |
| EcoICRI | GAGCTC | 1 cut(s) | 813 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2313 |
| EcoO109I | RGGNCCY | 4 cut(s) | 64, 2436, 2907, 3525 |
| EcoRI | GAATTC | 3 cut(s) | 1892, 2101, 3160 |
| EcoRII | CCWGG | 4 cut(s) | 1080, 1654, 2187, 2910 |
| EcoRV | GATATC | 1 cut(s) | 36 |
| EcoT14I | CCWWGG | 3 cut(s) | 939, 1457, 3265 |
| EcoT22I | ATGCAT | 1 cut(s) | 3084 |
| EcoT38I | GRGCYC | 1 cut(s) | 815 |
| ErhI | CCWWGG | 3 cut(s) | 939, 1457, 3265 |
| Esp3I | CGTCTC | 1 cut(s) | 60 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1138, 1170, 3051, 3083 |
| FaqI | GGGAC | 3 cut(s) | 1385, 1522, 2449 |
| FauI | CCCGC | 1 cut(s) | 353 |
| FauNDI | CATATG | 1 cut(s) | 45 |
| FbaI | TGATCA | 2 cut(s) | 1039, 1417 |
| FblI | GTMKAC | 1 cut(s) | 334 |
| FokI | GGATG | 6 cut(s) | 882, 1565, 2571, 2860, 3224, 3352 |
| FriOI | GRGCYC | 1 cut(s) | 815 |
| GlaI | GCGC | 2 cut(s) | 1711, 3063 |
| GsuI | CTGGAG | 1 cut(s) | 80 |
| HaeII | RGCGCY | 1 cut(s) | 3065 |
| HaeIII | GGCC | 7 cut(s) | 938, 1456, 1707, 2250, 2864, 2908, 3526 |
| HapII | CCGG | 4 cut(s) | 569, 994, 1616, 3519 |
| HhaI | GCGC | 2 cut(s) | 1712, 3064 |
| Hin6I | GCGC | 2 cut(s) | 1710, 3062 |
| HinP1I | GCGC | 2 cut(s) | 1710, 3062 |
| HincII | GTYRAC | 4 cut(s) | 784, 1182, 2728, 3169 |
| HindII | GTYRAC | 4 cut(s) | 784, 1182, 2728, 3169 |
| HindIII | AAGCTT | 3 cut(s) | 1469, 1759, 2322 |
| HpaI | GTTAAC | 2 cut(s) | 784, 2728 |
| HpaII | CCGG | 4 cut(s) | 569, 994, 1616, 3519 |
| HphI | GGTGA | 9 cut(s) | 30, 140, 257, 272, 287, 1323, 1838, 2003, 2863 |
| Hpy166II | GTNNAC | 8 cut(s) | 335, 784, 1182, 1486, 1528, 2728, 3169, 3185 |
| Hpy8I | GTNNAC | 8 cut(s) | 335, 784, 1182, 1486, 1528, 2728, 3169, 3185 |
| HpyCH4IV | ACGT | 3 cut(s) | 763, 2614, 3465 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 935, 1112, 1312, 1612, 2276, 2494, 2630, 2996, 3469 |
| HpySE526I | ACGT | 3 cut(s) | 763, 2614, 3465 |
| HspAI | GCGC | 2 cut(s) | 1710, 3062 |
| Kpn2I | TCCGGA | 1 cut(s) | 993 |
| Ksp22I | TGATCA | 2 cut(s) | 1039, 1417 |
| KspAI | GTTAAC | 2 cut(s) | 784, 2728 |
| LguI | GCTCTTC | 2 cut(s) | 1044, 1141 |
| LmnI | GCTCC | 4 cut(s) | 2047, 2056, 2704, 3411 |
| MaeII | ACGT | 3 cut(s) | 763, 2614, 3465 |
| MaeIII | GTNAC | 5 cut(s) | 13, 1970, 2233, 2311, 3194 |
| MbiI | CCGCTC | 1 cut(s) | 2263 |
| MflI | RGATCY | 3 cut(s) | 1138, 2227, 2453 |
| MhlI | GDGCHC | 5 cut(s) | 815, 1249, 3376, 3465, 3474 |
| MlsI | TGGCCA | 2 cut(s) | 2250, 2864 |
| MluNI | TGGCCA | 2 cut(s) | 2250, 2864 |
| MlyI | GAGTC | 4 cut(s) | 1130, 1496, 1905, 2230 |
| MmeI | TCCRAC | 2 cut(s) | 2363, 2431 |
| Mox20I | TGGCCA | 2 cut(s) | 2250, 2864 |
| Mph1103I | ATGCAT | 1 cut(s) | 3084 |
| MroI | TCCGGA | 1 cut(s) | 993 |
| MscI | TGGCCA | 2 cut(s) | 2250, 2864 |
| MslI | CAYNNNNRTG | 3 cut(s) | 465, 519, 2466 |
| Msp20I | TGGCCA | 2 cut(s) | 2250, 2864 |
| MspI | CCGG | 4 cut(s) | 569, 994, 1616, 3519 |
| MspR9I | CCNGG | 5 cut(s) | 1082, 1617, 1656, 2189, 2912 |
| Mva1269I | GAATGC | 2 cut(s) | 1569, 3084 |
| MvaI | CCWGG | 4 cut(s) | 1082, 1656, 2189, 2912 |
| MvnI | CGCG | 1 cut(s) | 1710 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 935, 1112, 1312, 1612, 2276, 2494, 2630, 2996, 3469 |
| NciI | CCSGG | 1 cut(s) | 1617 |
| NcoI | CCATGG | 1 cut(s) | 939 |
| NdeI | CATATG | 1 cut(s) | 45 |
| NheI | GCTAGC | 1 cut(s) | 410 |
| NlaIV | GGNNCC | 5 cut(s) | 1923, 2437, 2455, 2909, 3527 |
| NmeAIII | GCCGAG | 1 cut(s) | 3395 |
| NmuCI | GTSAC | 4 cut(s) | 1970, 2233, 2311, 3194 |
| NsiI | ATGCAT | 1 cut(s) | 3084 |
| NspI | RCATGY | 2 cut(s) | 1058, 2307 |
| NspV | TTCGAA | 1 cut(s) | 2099 |
| PaeI | GCATGC | 1 cut(s) | 1058 |
| PagI | TCATGA | 1 cut(s) | 817 |
| PciI | ACATGT | 1 cut(s) | 2303 |
| PciSI | GCTCTTC | 2 cut(s) | 1044, 1141 |
| PctI | GAATGC | 2 cut(s) | 1569, 3084 |
| PfeI | GAWTC | 7 cut(s) | 1328, 1430, 1559, 1865, 2330, 2665, 3392 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 471, 525 |
| PleI | GAGTC | 4 cut(s) | 1129, 1496, 1905, 2230 |
| PmaCI | CACGTG | 1 cut(s) | 2615 |
| PmlI | CACGTG | 1 cut(s) | 2615 |
| PpsI | GAGTC | 4 cut(s) | 1129, 1496, 1905, 2230 |
| Ppu21I | YACGTR | 1 cut(s) | 2615 |
| PpuMI | RGGWCCY | 2 cut(s) | 64, 2436 |
| PscI | ACATGT | 1 cut(s) | 2303 |
| PshAI | GACNNNNGTC | 1 cut(s) | 510 |
| Psp124BI | GAGCTC | 1 cut(s) | 815 |
| Psp5II | RGGWCCY | 2 cut(s) | 64, 2436 |
| Psp6I | CCWGG | 4 cut(s) | 1080, 1654, 2187, 2910 |
| PspCI | CACGTG | 1 cut(s) | 2615 |
| PspGI | CCWGG | 4 cut(s) | 1080, 1654, 2187, 2910 |
| PspN4I | GGNNCC | 5 cut(s) | 1923, 2437, 2455, 2909, 3527 |
| PspPI | GGNCC | 6 cut(s) | 64, 1454, 1661, 2436, 2907, 3525 |
| PspPPI | RGGWCCY | 2 cut(s) | 64, 2436 |
| PstI | CTGCAG | 1 cut(s) | 3358 |
| PsuI | RGATCY | 3 cut(s) | 1138, 2227, 2453 |
| RsaI | GTAC | 6 cut(s) | 238, 1487, 1820, 1881, 2343, 3248 |
| RsaNI | GTAC | 6 cut(s) | 237, 1486, 1819, 1880, 2342, 3247 |
| RseI | CAYNNNNRTG | 3 cut(s) | 465, 519, 2466 |
| SacI | GAGCTC | 1 cut(s) | 815 |
| SapI | GCTCTTC | 2 cut(s) | 1044, 1141 |
| Sau96I | GGNCC | 6 cut(s) | 64, 1454, 1661, 2436, 2907, 3525 |
| SchI | GAGTC | 4 cut(s) | 1130, 1496, 1905, 2230 |
| ScrFI | CCNGG | 5 cut(s) | 1082, 1617, 1656, 2189, 2912 |
| SduI | GDGCHC | 5 cut(s) | 815, 1249, 3376, 3465, 3474 |
| SfcI | CTRYAG | 1 cut(s) | 3354 |
| SfuI | TTCGAA | 1 cut(s) | 2099 |
| SinI | GGWCC | 3 cut(s) | 64, 1661, 2436 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 465, 519, 2466 |
| SmlI | CTYRAG | 1 cut(s) | 2961 |
| SmoI | CTYRAG | 1 cut(s) | 2961 |
| SphI | GCATGC | 1 cut(s) | 1058 |
| SsiI | CCGC | 6 cut(s) | 127, 360, 868, 1664, 1708, 2263 |
| SspI | AATATT | 2 cut(s) | 659, 3236 |
| SstI | GAGCTC | 1 cut(s) | 815 |
| StyD4I | CCNGG | 5 cut(s) | 1080, 1615, 1654, 2187, 2910 |
| StyI | CCWWGG | 3 cut(s) | 939, 1457, 3265 |
| TaiI | ACGT | 3 cut(s) | 766, 2617, 3468 |
| TaqI | TCGA | 5 cut(s) | 113, 585, 1849, 1956, 2099 |
| TatI | WGTACW | 2 cut(s) | 1485, 1879 |
| TauI | GCSGC | 2 cut(s) | 870, 1710 |
| TfiI | GAWTC | 7 cut(s) | 1328, 1430, 1559, 1865, 2330, 2665, 3392 |
| TseFI | GTSAC | 4 cut(s) | 1970, 2233, 2311, 3194 |
| Tsp45I | GTSAC | 4 cut(s) | 1970, 2233, 2311, 3194 |
| TspGWI | ACGGA | 2 cut(s) | 1218, 3288 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 471, 525 |
| VpaK11BI | GGWCC | 3 cut(s) | 64, 1661, 2436 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2313 |
| XapI | RAATTY | 8 cut(s) | 1892, 1995, 2101, 2137, 2353, 3160, 3223, 3477 |
| XbaI | TCTAGA | 2 cut(s) | 2000, 2239 |
| XceI | RCATGY | 2 cut(s) | 1058, 2307 |
| XmiI | GTMKAC | 1 cut(s) | 334 |
| Zsp2I | ATGCAT | 1 cut(s) | 3084 |