RING-type E3 ubiquitin transferase
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g44280 |
| malus_domestica | MD11G1016300.v1.1 |
| prunus_persica | Prupe.6G014500_v2.0.a1 |
| pyrus_communis | pycom11g01150 |
| rosa_chinensis | RchiOBHm_Chr5g0080651 |
| rosa_laevigata | RLG00000036879 |
| rosa_multiflora | Rmu_sc0002380.1_g000007 Rmu_sc0039404.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00002750 |
| rosa_rugosa | Rorug05G0470900 |
| rosa_samantha | Rh5AG524200 Rh5BG546500 Rh5CG569700 Rh5DG556700 |
| rosa_wichuraiana | Rw5G048630 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 880 |
| AccB1I | GGYRCC | 1 cut(s) | 1882 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 441, 495 |
| AccBSI | CCGCTC | 1 cut(s) | 2254 |
| AccI | GTMKAC | 1 cut(s) | 304 |
| AccII | CGCG | 1 cut(s) | 1671 |
| AccIII | TCCGGA | 1 cut(s) | 954 |
| AciI | CCGC | 7 cut(s) | 82, 330, 829, 1620, 1625, 1669, 2254 |
| AclWI | GGATC | 5 cut(s) | 286, 540, 2213, 2439, 2452 |
| AcoI | YGGCCR | 3 cut(s) | 1666, 2239, 2832 |
| AcsI | RAATTY | 7 cut(s) | 1853, 1956, 2062, 2344, 3130, 3193, 3447 |
| AcuI | CTGAAG | 9 cut(s) | 1262, 1448, 1584, 2145, 2687, 3428, 3440, 3460, 3573 |
| AcvI | CACGTG | 1 cut(s) | 2606 |
| AfaI | GTAC | 5 cut(s) | 190, 1448, 1781, 2334, 3218 |
| AfeI | AGCGCT | 1 cut(s) | 3033 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 441, 495, 1225, 1784, 2201, 2253, 2306, 2874, 3495 |
| AflIII | ACRYGT | 2 cut(s) | 2294, 2605 |
| AjnI | CCWGG | 4 cut(s) | 1041, 1615, 2178, 2880 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 115, 147 |
| Alw21I | GWGCWC | 5 cut(s) | 776, 1210, 3346, 3435, 3444 |
| Alw26I | GTCTC | 5 cut(s) | 15, 121, 1806, 2228, 3468 |
| AlwI | GGATC | 5 cut(s) | 286, 540, 2213, 2439, 2452 |
| Aor13HI | TCCGGA | 1 cut(s) | 954 |
| Aor51HI | AGCGCT | 1 cut(s) | 3033 |
| AoxI | GGCC | 7 cut(s) | 95, 897, 1415, 1666, 2239, 2832, 2876 |
| ApoI | RAATTY | 7 cut(s) | 1853, 1956, 2062, 2344, 3130, 3193, 3447 |
| AspA2I | CCTAGG | 1 cut(s) | 2390 |
| AspLEI | GCGC | 2 cut(s) | 1673, 3034 |
| AspS9I | GGNCC | 5 cut(s) | 19, 1415, 1622, 2427, 2877 |
| AsuHPI | GGTGA | 9 cut(s) | 95, 209, 224, 1284, 1799, 1914, 1964, 2833, 3134 |
| AsuII | TTCGAA | 1 cut(s) | 2060 |
| AsuNHI | GCTAGC | 1 cut(s) | 380 |
| AvaII | GGWCC | 3 cut(s) | 19, 1622, 2427 |
| AvrII | CCTAGG | 1 cut(s) | 2390 |
| AxyI | CCTNAGG | 1 cut(s) | 2431 |
| BalI | TGGCCA | 2 cut(s) | 2241, 2834 |
| BamHI | GGATCC | 1 cut(s) | 2444 |
| BanI | GGYRCC | 1 cut(s) | 1882 |
| BanII | GRGCYC | 1 cut(s) | 776 |
| BbrPI | CACGTG | 1 cut(s) | 2606 |
| BbsI | GAAGAC | 2 cut(s) | 77, 3153 |
| Bbv12I | GWGCWC | 5 cut(s) | 776, 1210, 3346, 3435, 3444 |
| BbvCI | CCTCAGC | 1 cut(s) | 1077 |
| BccI | CCATC | 8 cut(s) | 29, 1547, 1700, 1742, 2270, 2812, 3502, 3593 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1300, 1334, 3003, 3037 |
| BciT130I | CCWGG | 4 cut(s) | 1043, 1617, 2180, 2882 |
| BciVI | GTATCC | 1 cut(s) | 3233 |
| BclI | TGATCA | 2 cut(s) | 1000, 1378 |
| BcoDI | GTCTC | 5 cut(s) | 15, 121, 1806, 2228, 3468 |
| BfmI | CTRYAG | 1 cut(s) | 3324 |
| BfoI | RGCGCY | 1 cut(s) | 3035 |
| BfuAI | ACCTGC | 1 cut(s) | 880 |
| BfuI | GTATCC | 1 cut(s) | 3233 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2267 |
| BglII | AGATCT | 1 cut(s) | 1099 |
| BlnI | CCTAGG | 1 cut(s) | 2390 |
| Bme1390I | CCNGG | 4 cut(s) | 1043, 1617, 2180, 2882 |
| Bme18I | GGWCC | 3 cut(s) | 19, 1622, 2427 |
| BmgT120I | GGNCC | 5 cut(s) | 19, 1415, 1622, 2427, 2877 |
| BmiI | GGNNCC | 4 cut(s) | 1884, 2428, 2446, 2879 |
| BmrFI | CCNGG | 4 cut(s) | 1043, 1617, 2180, 2882 |
| BmtI | GCTAGC | 1 cut(s) | 384 |
| BoxI | GACNNNNGTC | 1 cut(s) | 480 |
| BpiI | GAAGAC | 2 cut(s) | 77, 3153 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 234, 266 |
| BpmI | CTGGAG | 1 cut(s) | 35 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1077, 1887 |
| Bpu14I | TTCGAA | 1 cut(s) | 2060 |
| BpuEI | CTTGAG | 1 cut(s) | 2916 |
| BsaAI | YACGTR | 1 cut(s) | 2606 |
| BsaBI | GATNNNNATC | 2 cut(s) | 177, 1171 |
| BsaJI | CCNNGG | 6 cut(s) | 900, 1418, 2178, 2390, 2880, 3235 |
| BsaWI | WCCGGW | 1 cut(s) | 954 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 441, 495, 1225, 1784, 2201, 2253, 2306, 2874, 3495 |
| Bse1I | ACTGG | 8 cut(s) | 435, 489, 640, 2085, 2102, 2222, 2242, 2803 |
| Bse21I | CCTNAGG | 1 cut(s) | 2431 |
| Bse3DI | GCAATG | 2 cut(s) | 1059, 1074 |
| Bse8I | GATNNNNATC | 2 cut(s) | 177, 1171 |
| BseAI | TCCGGA | 1 cut(s) | 954 |
| BseBI | CCWGG | 4 cut(s) | 1043, 1617, 2180, 2882 |
| BseDI | CCNNGG | 6 cut(s) | 900, 1418, 2178, 2390, 2880, 3235 |
| BseGI | GGATG | 7 cut(s) | 856, 1539, 2386, 2555, 2823, 3187, 3315 |
| BseJI | GATNNNNATC | 2 cut(s) | 177, 1171 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 441, 495, 1225, 1784, 2201, 2253, 2306, 2874, 3495 |
| BseMI | GCAATG | 2 cut(s) | 1059, 1074 |
| BseMII | CTCAG | 6 cut(s) | 537, 1068, 1234, 1847, 1878, 2445 |
| BseNI | ACTGG | 8 cut(s) | 435, 489, 640, 2085, 2102, 2222, 2242, 2803 |
| BseRI | GAGGAG | 4 cut(s) | 701, 959, 962, 1094 |
| BsgI | GTGCAG | 2 cut(s) | 1824, 3514 |
| Bsh1236I | CGCG | 1 cut(s) | 1671 |
| BshFI | GGCC | 7 cut(s) | 97, 899, 1417, 1668, 2241, 2834, 2878 |
| BshNI | GGYRCC | 1 cut(s) | 1882 |
| BsiHKAI | GWGCWC | 5 cut(s) | 776, 1210, 3346, 3435, 3444 |
| BsiSI | CCGG | 2 cut(s) | 539, 955 |
| BslFI | GGGAC | 4 cut(s) | 249, 1346, 1483, 2440 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 441, 495, 1225, 1784, 2201, 2253, 2306, 2874, 3495 |
| BsmAI | GTCTC | 5 cut(s) | 15, 121, 1806, 2228, 3468 |
| BsmBI | CGTCTC | 1 cut(s) | 15 |
| BsmFI | GGGAC | 4 cut(s) | 249, 1346, 1483, 2440 |
| BsmI | GAATGC | 2 cut(s) | 1530, 3054 |
| BsnI | GGCC | 7 cut(s) | 97, 899, 1417, 1668, 2241, 2834, 2878 |
| Bsp119I | TTCGAA | 1 cut(s) | 2060 |
| Bsp1286I | GDGCHC | 5 cut(s) | 776, 1210, 3346, 3435, 3444 |
| Bsp13I | TCCGGA | 1 cut(s) | 954 |
| Bsp1407I | TGTACA | 1 cut(s) | 1446 |
| Bsp143I | GATC | 9 cut(s) | 247, 278, 532, 1000, 1099, 1378, 2218, 2444, 2951 |
| Bsp19I | CCATGG | 1 cut(s) | 900 |
| BspACI | CCGC | 7 cut(s) | 82, 330, 829, 1620, 1625, 1669, 2254 |
| BspANI | GGCC | 7 cut(s) | 97, 899, 1417, 1668, 2241, 2834, 2878 |
| BspCNI | CTCAG | 6 cut(s) | 538, 1069, 1233, 1846, 1879, 2444 |
| BspEI | TCCGGA | 1 cut(s) | 954 |
| BspFNI | CGCG | 1 cut(s) | 1671 |
| BspHI | TCATGA | 1 cut(s) | 778 |
| BspLI | GGNNCC | 4 cut(s) | 1884, 2428, 2446, 2879 |
| BspMAI | CTGCAG | 1 cut(s) | 3328 |
| BspMI | ACCTGC | 1 cut(s) | 880 |
| BspOI | GCTAGC | 1 cut(s) | 384 |
| BspPI | GGATC | 5 cut(s) | 286, 540, 2213, 2439, 2452 |
| BspQI | GCTCTTC | 2 cut(s) | 1005, 1102 |
| BspT104I | TTCGAA | 1 cut(s) | 2060 |
| BspT107I | GGYRCC | 1 cut(s) | 1882 |
| BsrBI | CCGCTC | 1 cut(s) | 2254 |
| BsrDI | GCAATG | 2 cut(s) | 1059, 1074 |
| BsrGI | TGTACA | 1 cut(s) | 1446 |
| BsrI | ACTGG | 8 cut(s) | 435, 489, 640, 2085, 2102, 2222, 2242, 2803 |
| BssECI | CCNNGG | 6 cut(s) | 900, 1418, 2178, 2390, 2880, 3235 |
| BssMI | GATC | 9 cut(s) | 247, 278, 532, 1000, 1099, 1378, 2218, 2444, 2951 |
| BssT1I | CCWWGG | 4 cut(s) | 900, 1418, 2390, 3235 |
| Bst2UI | CCWGG | 4 cut(s) | 1043, 1617, 2180, 2882 |
| Bst4CI | ACNGT | 7 cut(s) | 623, 710, 1779, 2056, 2574, 2685, 3428 |
| Bst6I | CTCTTC | 8 cut(s) | 253, 455, 1005, 1102, 1566, 2121, 2589, 2762 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 1073, 1273, 2621, 2966 |
| BstAUI | TGTACA | 1 cut(s) | 1446 |
| BstBAI | YACGTR | 1 cut(s) | 2606 |
| BstBI | TTCGAA | 1 cut(s) | 2060 |
| BstC8I | GCNNGC | 6 cut(s) | 382, 768, 772, 2555, 2668, 2804 |
| BstDSI | CCRYGG | 1 cut(s) | 900 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2304 |
| BstF5I | GGATG | 7 cut(s) | 856, 1539, 2386, 2555, 2823, 3187, 3315 |
| BstFNI | CGCG | 1 cut(s) | 1671 |
| BstH2I | RGCGCY | 1 cut(s) | 3035 |
| BstHHI | GCGC | 2 cut(s) | 1673, 3034 |
| BstKTI | GATC | 9 cut(s) | 250, 281, 535, 1003, 1102, 1381, 2221, 2447, 2954 |
| BstMAI | GTCTC | 5 cut(s) | 15, 121, 1806, 2228, 3468 |
| BstMBI | GATC | 9 cut(s) | 247, 278, 532, 1000, 1099, 1378, 2218, 2444, 2951 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 896, 1073, 1273, 1573, 2267, 2485, 2621, 2966, 3439 |
| BstNI | CCWGG | 4 cut(s) | 1043, 1617, 2180, 2882 |
| BstNSI | RCATGY | 3 cut(s) | 1019, 2298, 3584 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 480 |
| BstSCI | CCNGG | 4 cut(s) | 1041, 1615, 2178, 2880 |
| BstSFI | CTRYAG | 1 cut(s) | 3324 |
| BstUI | CGCG | 1 cut(s) | 1671 |
| BstV2I | GAAGAC | 2 cut(s) | 77, 3153 |
| BstX2I | RGATCY | 3 cut(s) | 1099, 2218, 2444 |
| BstYI | RGATCY | 3 cut(s) | 1099, 2218, 2444 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2431 |
| BsuI | GTATCC | 1 cut(s) | 3233 |
| BsuRI | GGCC | 7 cut(s) | 97, 899, 1417, 1668, 2241, 2834, 2878 |
| BtgI | CCRYGG | 1 cut(s) | 900 |
| BtsCI | GGATG | 7 cut(s) | 856, 1539, 2386, 2555, 2823, 3187, 3315 |
| BtsI | GCAGTG | 3 cut(s) | 1665, 2742, 3321 |
| BveI | ACCTGC | 1 cut(s) | 880 |
| Cac8I | GCNNGC | 6 cut(s) | 382, 768, 772, 2555, 2668, 2804 |
| CciI | TCATGA | 1 cut(s) | 778 |
| CfoI | GCGC | 2 cut(s) | 1673, 3034 |
| Cfr13I | GGNCC | 5 cut(s) | 19, 1415, 1622, 2427, 2877 |
| CpoI | CGGWCCG | 1 cut(s) | 1622 |
| Csp6I | GTAC | 5 cut(s) | 189, 1447, 1780, 2333, 3217 |
| CspI | CGGWCCG | 1 cut(s) | 1622 |
| CviQI | GTAC | 5 cut(s) | 189, 1447, 1780, 2333, 3217 |
| DpnI | GATC | 9 cut(s) | 249, 280, 534, 1002, 1101, 1380, 2220, 2446, 2953 |
| DpnII | GATC | 9 cut(s) | 247, 278, 532, 1000, 1099, 1378, 2218, 2444, 2951 |
| DraI | TTTAAA | 3 cut(s) | 351, 405, 1365 |
| EaeI | YGGCCR | 3 cut(s) | 1666, 2239, 2832 |
| Eam1104I | CTCTTC | 8 cut(s) | 253, 455, 1005, 1102, 1566, 2121, 2589, 2762 |
| EarI | CTCTTC | 8 cut(s) | 253, 455, 1005, 1102, 1566, 2121, 2589, 2762 |
| Ecl136II | GAGCTC | 1 cut(s) | 774 |
| Eco130I | CCWWGG | 4 cut(s) | 900, 1418, 2390, 3235 |
| Eco147I | AGGCCT | 1 cut(s) | 97 |
| Eco24I | GRGCYC | 1 cut(s) | 776 |
| Eco47I | GGWCC | 3 cut(s) | 19, 1622, 2427 |
| Eco47III | AGCGCT | 1 cut(s) | 3033 |
| Eco53kI | GAGCTC | 1 cut(s) | 774 |
| Eco57I | CTGAAG | 9 cut(s) | 1262, 1448, 1584, 2145, 2687, 3428, 3440, 3460, 3573 |
| Eco72I | CACGTG | 1 cut(s) | 2606 |
| Eco81I | CCTNAGG | 1 cut(s) | 2431 |
| EcoICRI | GAGCTC | 1 cut(s) | 774 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2304 |
| EcoO109I | RGGNCCY | 3 cut(s) | 19, 2427, 2877 |
| EcoRI | GAATTC | 3 cut(s) | 1853, 2062, 3130 |
| EcoRII | CCWGG | 4 cut(s) | 1041, 1615, 2178, 2880 |
| EcoT14I | CCWWGG | 4 cut(s) | 900, 1418, 2390, 3235 |
| EcoT22I | ATGCAT | 1 cut(s) | 3054 |
| EcoT38I | GRGCYC | 1 cut(s) | 776 |
| ErhI | CCWWGG | 4 cut(s) | 900, 1418, 2390, 3235 |
| Esp3I | CGTCTC | 1 cut(s) | 15 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 62, 94, 1099, 1131, 2104, 2136, 3021, 3053 |
| FaqI | GGGAC | 4 cut(s) | 249, 1346, 1483, 2440 |
| FauI | CCCGC | 1 cut(s) | 323 |
| FbaI | TGATCA | 2 cut(s) | 1000, 1378 |
| FblI | GTMKAC | 1 cut(s) | 304 |
| FokI | GGATG | 7 cut(s) | 843, 1526, 2373, 2562, 2830, 3194, 3322 |
| FriOI | GRGCYC | 1 cut(s) | 776 |
| GlaI | GCGC | 2 cut(s) | 1672, 3033 |
| GsuI | CTGGAG | 1 cut(s) | 35 |
| HaeII | RGCGCY | 1 cut(s) | 3035 |
| HaeIII | GGCC | 7 cut(s) | 97, 899, 1417, 1668, 2241, 2834, 2878 |
| HapII | CCGG | 2 cut(s) | 539, 955 |
| HhaI | GCGC | 2 cut(s) | 1673, 3034 |
| Hin6I | GCGC | 2 cut(s) | 1671, 3032 |
| HinP1I | GCGC | 2 cut(s) | 1671, 3032 |
| HincII | GTYRAC | 4 cut(s) | 745, 1143, 2719, 3139 |
| HindII | GTYRAC | 4 cut(s) | 745, 1143, 2719, 3139 |
| HindIII | AAGCTT | 3 cut(s) | 1430, 1720, 2313 |
| HpaI | GTTAAC | 2 cut(s) | 745, 2719 |
| HpaII | CCGG | 2 cut(s) | 539, 955 |
| HphI | GGTGA | 9 cut(s) | 95, 209, 224, 1284, 1799, 1914, 1964, 2833, 3134 |
| Hpy166II | GTNNAC | 8 cut(s) | 305, 745, 1039, 1143, 1447, 1489, 2719, 3139 |
| Hpy8I | GTNNAC | 8 cut(s) | 305, 745, 1039, 1143, 1447, 1489, 2719, 3139 |
| HpyCH4III | ACNGT | 7 cut(s) | 623, 710, 1779, 2056, 2574, 2685, 3428 |
| HpyCH4IV | ACGT | 2 cut(s) | 2605, 3435 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 896, 1073, 1273, 1573, 2267, 2485, 2621, 2966, 3439 |
| HpySE526I | ACGT | 2 cut(s) | 2605, 3435 |
| HspAI | GCGC | 2 cut(s) | 1671, 3032 |
| Kpn2I | TCCGGA | 1 cut(s) | 954 |
| Ksp22I | TGATCA | 2 cut(s) | 1000, 1378 |
| KspAI | GTTAAC | 2 cut(s) | 745, 2719 |
| Kzo9I | GATC | 9 cut(s) | 247, 278, 532, 1000, 1099, 1378, 2218, 2444, 2951 |
| LguI | GCTCTTC | 2 cut(s) | 1005, 1102 |
| LmnI | GCTCC | 4 cut(s) | 2008, 2017, 2695, 3381 |
| MaeII | ACGT | 2 cut(s) | 2605, 3435 |
| MaeIII | GTNAC | 6 cut(s) | 1931, 2224, 2302, 3164, 3556, 3576 |
| MalI | GATC | 9 cut(s) | 249, 280, 534, 1002, 1101, 1380, 2220, 2446, 2953 |
| MbiI | CCGCTC | 1 cut(s) | 2254 |
| MboI | GATC | 9 cut(s) | 247, 278, 532, 1000, 1099, 1378, 2218, 2444, 2951 |
| MflI | RGATCY | 3 cut(s) | 1099, 2218, 2444 |
| MhlI | GDGCHC | 5 cut(s) | 776, 1210, 3346, 3435, 3444 |
| MlsI | TGGCCA | 2 cut(s) | 2241, 2834 |
| MluNI | TGGCCA | 2 cut(s) | 2241, 2834 |
| MlyI | GAGTC | 4 cut(s) | 1091, 1457, 1866, 2221 |
| MmeI | TCCRAC | 2 cut(s) | 2354, 2422 |
| Mox20I | TGGCCA | 2 cut(s) | 2241, 2834 |
| Mph1103I | ATGCAT | 1 cut(s) | 3054 |
| MroI | TCCGGA | 1 cut(s) | 954 |
| MscI | TGGCCA | 2 cut(s) | 2241, 2834 |
| MslI | CAYNNNNRTG | 4 cut(s) | 435, 489, 1985, 2457 |
| Msp20I | TGGCCA | 2 cut(s) | 2241, 2834 |
| MspI | CCGG | 2 cut(s) | 539, 955 |
| MspR9I | CCNGG | 4 cut(s) | 1043, 1617, 2180, 2882 |
| Mva1269I | GAATGC | 2 cut(s) | 1530, 3054 |
| MvaI | CCWGG | 4 cut(s) | 1043, 1617, 2180, 2882 |
| MvnI | CGCG | 1 cut(s) | 1671 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 896, 1073, 1273, 1573, 2267, 2485, 2621, 2966, 3439 |
| NcoI | CCATGG | 1 cut(s) | 900 |
| NdeII | GATC | 9 cut(s) | 247, 278, 532, 1000, 1099, 1378, 2218, 2444, 2951 |
| NheI | GCTAGC | 1 cut(s) | 380 |
| NlaIV | GGNNCC | 4 cut(s) | 1884, 2428, 2446, 2879 |
| NmeAIII | GCCGAG | 1 cut(s) | 3365 |
| NmuCI | GTSAC | 4 cut(s) | 1931, 2224, 2302, 3164 |
| NsiI | ATGCAT | 1 cut(s) | 3054 |
| NspI | RCATGY | 3 cut(s) | 1019, 2298, 3584 |
| NspV | TTCGAA | 1 cut(s) | 2060 |
| PagI | TCATGA | 1 cut(s) | 778 |
| PceI | AGGCCT | 1 cut(s) | 97 |
| PciI | ACATGT | 1 cut(s) | 2294 |
| PciSI | GCTCTTC | 2 cut(s) | 1005, 1102 |
| PctI | GAATGC | 2 cut(s) | 1530, 3054 |
| PflFI | GACNNNGTC | 1 cut(s) | 166 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 441, 495 |
| PleI | GAGTC | 4 cut(s) | 1090, 1457, 1866, 2221 |
| PmaCI | CACGTG | 1 cut(s) | 2606 |
| PmlI | CACGTG | 1 cut(s) | 2606 |
| PpsI | GAGTC | 4 cut(s) | 1090, 1457, 1866, 2221 |
| Ppu21I | YACGTR | 1 cut(s) | 2606 |
| PpuMI | RGGWCCY | 2 cut(s) | 19, 2427 |
| PscI | ACATGT | 1 cut(s) | 2294 |
| PshAI | GACNNNNGTC | 1 cut(s) | 480 |
| Psp124BI | GAGCTC | 1 cut(s) | 776 |
| Psp5II | RGGWCCY | 2 cut(s) | 19, 2427 |
| Psp6I | CCWGG | 4 cut(s) | 1041, 1615, 2178, 2880 |
| PspCI | CACGTG | 1 cut(s) | 2606 |
| PspGI | CCWGG | 4 cut(s) | 1041, 1615, 2178, 2880 |
| PspN4I | GGNNCC | 4 cut(s) | 1884, 2428, 2446, 2879 |
| PspPI | GGNCC | 5 cut(s) | 19, 1415, 1622, 2427, 2877 |
| PspPPI | RGGWCCY | 2 cut(s) | 19, 2427 |
| PstI | CTGCAG | 1 cut(s) | 3328 |
| PsuI | RGATCY | 3 cut(s) | 1099, 2218, 2444 |
| PsyI | GACNNNGTC | 1 cut(s) | 166 |
| RsaI | GTAC | 5 cut(s) | 190, 1448, 1781, 2334, 3218 |
| RsaNI | GTAC | 5 cut(s) | 189, 1447, 1780, 2333, 3217 |
| RseI | CAYNNNNRTG | 4 cut(s) | 435, 489, 1985, 2457 |
| Rsr2I | CGGWCCG | 1 cut(s) | 1622 |
| RsrII | CGGWCCG | 1 cut(s) | 1622 |
| SacI | GAGCTC | 1 cut(s) | 776 |
| SapI | GCTCTTC | 2 cut(s) | 1005, 1102 |
| Sau3AI | GATC | 9 cut(s) | 247, 278, 532, 1000, 1099, 1378, 2218, 2444, 2951 |
| Sau96I | GGNCC | 5 cut(s) | 19, 1415, 1622, 2427, 2877 |
| SchI | GAGTC | 4 cut(s) | 1091, 1457, 1866, 2221 |
| ScrFI | CCNGG | 4 cut(s) | 1043, 1617, 2180, 2882 |
| SduI | GDGCHC | 5 cut(s) | 776, 1210, 3346, 3435, 3444 |
| SfcI | CTRYAG | 1 cut(s) | 3324 |
| SfuI | TTCGAA | 1 cut(s) | 2060 |
| SinI | GGWCC | 3 cut(s) | 19, 1622, 2427 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 435, 489, 1985, 2457 |
| SmlI | CTYRAG | 1 cut(s) | 2931 |
| SmoI | CTYRAG | 1 cut(s) | 2931 |
| SseBI | AGGCCT | 1 cut(s) | 97 |
| SsiI | CCGC | 7 cut(s) | 82, 330, 829, 1620, 1625, 1669, 2254 |
| SspI | AATATT | 2 cut(s) | 629, 3206 |
| SstI | GAGCTC | 1 cut(s) | 776 |
| StuI | AGGCCT | 1 cut(s) | 97 |
| StyD4I | CCNGG | 4 cut(s) | 1041, 1615, 2178, 2880 |
| StyI | CCWWGG | 4 cut(s) | 900, 1418, 2390, 3235 |
| TaaI | ACNGT | 7 cut(s) | 623, 710, 1779, 2056, 2574, 2685, 3428 |
| TaiI | ACGT | 2 cut(s) | 2608, 3438 |
| TaqI | TCGA | 3 cut(s) | 68, 1810, 2060 |
| TatI | WGTACW | 1 cut(s) | 1446 |
| TauI | GCSGC | 2 cut(s) | 831, 1671 |
| TseFI | GTSAC | 4 cut(s) | 1931, 2224, 2302, 3164 |
| Tsp45I | GTSAC | 4 cut(s) | 1931, 2224, 2302, 3164 |
| TspGWI | ACGGA | 2 cut(s) | 1179, 3258 |
| Tth111I | GACNNNGTC | 1 cut(s) | 166 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 441, 495 |
| VpaK11BI | GGWCC | 3 cut(s) | 19, 1622, 2427 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2304 |
| XapI | RAATTY | 7 cut(s) | 1853, 1956, 2062, 2344, 3130, 3193, 3447 |
| XbaI | TCTAGA | 2 cut(s) | 1961, 2230 |
| XceI | RCATGY | 3 cut(s) | 1019, 2298, 3584 |
| XmaJI | CCTAGG | 1 cut(s) | 2390 |
| XmiI | GTMKAC | 1 cut(s) | 304 |
| Zsp2I | ATGCAT | 1 cut(s) | 3054 |