RING-type E3 ubiquitin transferase
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g44280 |
| malus_domestica | MD11G1016300.v1.1 |
| prunus_persica | Prupe.6G014500_v2.0.a1 |
| pyrus_communis | pycom11g01150 |
| rosa_chinensis | RchiOBHm_Chr5g0080651 |
| rosa_laevigata | RLG00000036879 |
| rosa_multiflora | Rmu_sc0002380.1_g000007 Rmu_sc0039404.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00002750 |
| rosa_rugosa | Rorug05G0470900 |
| rosa_samantha | Rh5AG524200 Rh5BG546500 Rh5CG569700 Rh5DG556700 |
| rosa_wichuraiana | Rw5G048630 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 968 |
| Acc36I | ACCTGC | 3 cut(s) | 224, 715, 3310 |
| AccI | GTMKAC | 2 cut(s) | 2822, 2850 |
| AccII | CGCG | 4 cut(s) | 103, 1751, 2590, 3228 |
| AccIII | TCCGGA | 1 cut(s) | 838 |
| AciI | CCGC | 7 cut(s) | 666, 1235, 1458, 2557, 2594, 3226, 3267 |
| AcoI | YGGCCR | 2 cut(s) | 529, 2244 |
| AcsI | RAATTY | 4 cut(s) | 784, 1966, 3013, 3079 |
| AcuI | CTGAAG | 8 cut(s) | 1097, 1283, 1385, 1677, 2537, 3027, 3326, 3346 |
| AcyI | GRCGYC | 3 cut(s) | 5, 2825, 2853 |
| AfaI | GTAC | 5 cut(s) | 562, 1067, 1283, 1573, 1646 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 147, 845, 1454, 1688, 1861, 2186, 2221, 2291, 3216 |
| AflIII | ACRYGT | 3 cut(s) | 1827, 2279, 3054 |
| AjiI | CACGTC | 2 cut(s) | 1206, 2256 |
| AjnI | CCWGG | 2 cut(s) | 553, 1453 |
| Alw21I | GWGCWC | 2 cut(s) | 1045, 2073 |
| Alw44I | GTGCAC | 1 cut(s) | 2069 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2439 |
| Ama87I | CYCGRG | 1 cut(s) | 2152 |
| Aor13HI | TCCGGA | 1 cut(s) | 838 |
| AoxI | GGCC | 3 cut(s) | 529, 1849, 2244 |
| ApaLI | GTGCAC | 1 cut(s) | 2069 |
| ApeKI | GCWGC | 4 cut(s) | 908, 2470, 2597, 2877 |
| ApoI | RAATTY | 4 cut(s) | 784, 1966, 3013, 3079 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 497, 529, 2027, 2059 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1632 |
| AspLEI | GCGC | 2 cut(s) | 1681, 3230 |
| AspS9I | GGNCC | 3 cut(s) | 1460, 1850, 2412 |
| AsuC2I | CCSGG | 2 cut(s) | 973, 1683 |
| AsuHPI | GGTGA | 9 cut(s) | 233, 395, 1333, 1835, 1876, 2039, 2299, 2431, 3199 |
| AsuII | TTCGAA | 1 cut(s) | 416 |
| AvaI | CYCGRG | 1 cut(s) | 2152 |
| AvaII | GGWCC | 2 cut(s) | 1460, 2412 |
| AxyI | CCTNAGG | 1 cut(s) | 2163 |
| BaeGI | GKGCMC | 1 cut(s) | 2073 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 796, 829 |
| BalI | TGGCCA | 2 cut(s) | 531, 2246 |
| BamHI | GGATCC | 2 cut(s) | 1691, 3170 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1383, 1415 |
| BbsI | GAAGAC | 3 cut(s) | 2007, 3039, 3314 |
| Bbv12I | GWGCWC | 2 cut(s) | 1045, 2073 |
| BbvI | GCAGC | 4 cut(s) | 895, 2482, 2609, 2889 |
| BceAI | ACGGC | 2 cut(s) | 1304, 1491 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1998, 2032, 2432, 2466 |
| BciT130I | CCWGG | 2 cut(s) | 555, 1455 |
| BciVI | GTATCC | 2 cut(s) | 1558, 2766 |
| BclI | TGATCA | 2 cut(s) | 1213, 2263 |
| BcnI | CCSGG | 2 cut(s) | 973, 1683 |
| BfaI | CTAG | 7 cut(s) | 306, 321, 1449, 2216, 2312, 2465, 3044 |
| BfmI | CTRYAG | 1 cut(s) | 909 |
| BfuAI | ACCTGC | 3 cut(s) | 224, 715, 3310 |
| BfuI | GTATCC | 2 cut(s) | 1558, 2766 |
| BisI | GCNGC | 6 cut(s) | 909, 2471, 2595, 2598, 2878, 3226 |
| BlpI | GCTNAGC | 1 cut(s) | 1410 |
| BlsI | GCNGC | 6 cut(s) | 910, 2472, 2596, 2599, 2879, 3227 |
| Bme1390I | CCNGG | 4 cut(s) | 555, 973, 1455, 1683 |
| Bme18I | GGWCC | 2 cut(s) | 1460, 2412 |
| BmeT110I | CYCGRG | 1 cut(s) | 2152 |
| BmgBI | CACGTC | 2 cut(s) | 1206, 2256 |
| BmgT120I | GGNCC | 3 cut(s) | 1460, 1850, 2412 |
| BmiI | GGNNCC | 4 cut(s) | 1693, 1852, 2413, 3172 |
| BmrFI | CCNGG | 4 cut(s) | 555, 973, 1455, 1683 |
| BmsI | GCATC | 5 cut(s) | 746, 1111, 1855, 2617, 2673 |
| BpiI | GAAGAC | 3 cut(s) | 2007, 3039, 3314 |
| BpmI | CTGGAG | 3 cut(s) | 1854, 2785, 2935 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1410 |
| Bpu14I | TTCGAA | 1 cut(s) | 416 |
| BpuEI | CTTGAG | 1 cut(s) | 2735 |
| BpuMI | CCSGG | 2 cut(s) | 973, 1683 |
| BsaHI | GRCGYC | 3 cut(s) | 5, 2825, 2853 |
| BsaI | GGTCTC | 2 cut(s) | 235, 599 |
| BsaJI | CCNNGG | 7 cut(s) | 344, 1253, 1536, 1926, 2104, 2415, 3210 |
| BsaWI | WCCGGW | 3 cut(s) | 838, 2284, 3374 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 147, 845, 1454, 1688, 1861, 2186, 2221, 2291, 3216 |
| Bse1I | ACTGG | 5 cut(s) | 1340, 1989, 2207, 2433, 3084 |
| Bse21I | CCTNAGG | 1 cut(s) | 2163 |
| Bse3DI | GCAATG | 3 cut(s) | 867, 950, 2497 |
| BseAI | TCCGGA | 1 cut(s) | 838 |
| BseBI | CCWGG | 2 cut(s) | 555, 1455 |
| BseDI | CCNNGG | 7 cut(s) | 344, 1253, 1536, 1926, 2104, 2415, 3210 |
| BseGI | GGATG | 8 cut(s) | 245, 286, 761, 1546, 1870, 2771, 2787, 3073 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 147, 845, 1454, 1688, 1861, 2186, 2221, 2291, 3216 |
| BseMI | GCAATG | 3 cut(s) | 867, 950, 2497 |
| BseNI | ACTGG | 5 cut(s) | 1340, 1989, 2207, 2433, 3084 |
| BseRI | GAGGAG | 2 cut(s) | 929, 1350 |
| BseSI | GKGCMC | 1 cut(s) | 2073 |
| BseXI | GCAGC | 4 cut(s) | 895, 2482, 2609, 2889 |
| Bsh1236I | CGCG | 4 cut(s) | 103, 1751, 2590, 3228 |
| BshFI | GGCC | 3 cut(s) | 531, 1851, 2246 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1045, 2073 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2152 |
| BsiSI | CCGG | 7 cut(s) | 790, 839, 972, 1011, 1682, 2285, 3375 |
| BsiWI | CGTACG | 1 cut(s) | 560 |
| BslFI | GGGAC | 3 cut(s) | 1318, 2238, 2425 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 147, 845, 1454, 1688, 1861, 2186, 2221, 2291, 3216 |
| BsmBI | CGTCTC | 2 cut(s) | 127, 2213 |
| BsmFI | GGGAC | 3 cut(s) | 1318, 2238, 2425 |
| BsmI | GAATGC | 2 cut(s) | 856, 2157 |
| BsnI | GGCC | 3 cut(s) | 531, 1851, 2246 |
| Bso31I | GGTCTC | 2 cut(s) | 235, 599 |
| BsoBI | CYCGRG | 1 cut(s) | 2152 |
| Bsp119I | TTCGAA | 1 cut(s) | 416 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1045, 2073 |
| Bsp13I | TCCGGA | 1 cut(s) | 838 |
| Bsp1407I | TGTACA | 2 cut(s) | 1065, 1281 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1410 |
| Bsp19I | CCATGG | 1 cut(s) | 1926 |
| Bsp68I | TCGCGA | 1 cut(s) | 1751 |
| BspACI | CCGC | 7 cut(s) | 666, 1235, 1458, 2557, 2594, 3226, 3267 |
| BspANI | GGCC | 3 cut(s) | 531, 1851, 2246 |
| BspEI | TCCGGA | 1 cut(s) | 838 |
| BspFNI | CGCG | 4 cut(s) | 103, 1751, 2590, 3228 |
| BspLI | GGNNCC | 4 cut(s) | 1693, 1852, 2413, 3172 |
| BspMAI | CTGCAG | 1 cut(s) | 913 |
| BspMI | ACCTGC | 3 cut(s) | 224, 715, 3310 |
| BspQI | GCTCTTC | 1 cut(s) | 1752 |
| BspT104I | TTCGAA | 1 cut(s) | 416 |
| BspTNI | GGTCTC | 2 cut(s) | 235, 599 |
| BsrDI | GCAATG | 3 cut(s) | 867, 950, 2497 |
| BsrGI | TGTACA | 2 cut(s) | 1065, 1281 |
| BsrI | ACTGG | 5 cut(s) | 1340, 1989, 2207, 2433, 3084 |
| BssECI | CCNNGG | 7 cut(s) | 344, 1253, 1536, 1926, 2104, 2415, 3210 |
| BssNI | GRCGYC | 3 cut(s) | 5, 2825, 2853 |
| BssT1I | CCWWGG | 3 cut(s) | 1926, 2104, 2415 |
| Bst2UI | CCWGG | 2 cut(s) | 555, 1455 |
| Bst6I | CTCTTC | 6 cut(s) | 483, 1404, 1751, 1752, 2328, 2574 |
| BstACI | GRCGYC | 3 cut(s) | 5, 2825, 2853 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1108 |
| BstAUI | TGTACA | 2 cut(s) | 1065, 1281 |
| BstBI | TTCGAA | 1 cut(s) | 416 |
| BstC8I | GCNNGC | 6 cut(s) | 925, 2540, 2592, 2696, 2792, 3317 |
| BstDSI | CCRYGG | 3 cut(s) | 344, 1926, 3210 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1452 |
| BstF5I | GGATG | 8 cut(s) | 245, 286, 761, 1546, 1870, 2771, 2787, 3073 |
| BstFNI | CGCG | 4 cut(s) | 103, 1751, 2590, 3228 |
| BstHHI | GCGC | 2 cut(s) | 1681, 3230 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 731, 1108, 1258, 2470, 2824, 2852, 3325 |
| BstNI | CCWGG | 2 cut(s) | 555, 1455 |
| BstNSI | RCATGY | 3 cut(s) | 1831, 2283, 3058 |
| BstSCI | CCNGG | 4 cut(s) | 553, 971, 1453, 1681 |
| BstSFI | CTRYAG | 1 cut(s) | 909 |
| BstSLI | GKGCMC | 1 cut(s) | 2073 |
| BstUI | CGCG | 4 cut(s) | 103, 1751, 2590, 3228 |
| BstV1I | GCAGC | 4 cut(s) | 895, 2482, 2609, 2889 |
| BstV2I | GAAGAC | 3 cut(s) | 2007, 3039, 3314 |
| BstX2I | RGATCY | 8 cut(s) | 19, 121, 1691, 2079, 2203, 2973, 3170, 3333 |
| BstYI | RGATCY | 8 cut(s) | 19, 121, 1691, 2079, 2203, 2973, 3170, 3333 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2163 |
| BsuI | GTATCC | 2 cut(s) | 1558, 2766 |
| BsuRI | GGCC | 3 cut(s) | 531, 1851, 2246 |
| BtgI | CCRYGG | 3 cut(s) | 344, 1926, 3210 |
| BtrI | CACGTC | 2 cut(s) | 1206, 2256 |
| BtsCI | GGATG | 8 cut(s) | 245, 286, 761, 1546, 1870, 2771, 2787, 3073 |
| BtsI | GCAGTG | 2 cut(s) | 2437, 2727 |
| BtuMI | TCGCGA | 1 cut(s) | 1751 |
| BveI | ACCTGC | 3 cut(s) | 224, 715, 3310 |
| Cac8I | GCNNGC | 6 cut(s) | 925, 2540, 2592, 2696, 2792, 3317 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2439 |
| CfoI | GCGC | 2 cut(s) | 1681, 3230 |
| Cfr13I | GGNCC | 3 cut(s) | 1460, 1850, 2412 |
| CseI | GACGC | 3 cut(s) | 92, 2833, 2861 |
| Csp6I | GTAC | 5 cut(s) | 561, 1066, 1282, 1572, 1645 |
| CviQI | GTAC | 5 cut(s) | 561, 1066, 1282, 1572, 1645 |
| DraI | TTTAAA | 3 cut(s) | 939, 1200, 2704 |
| EaeI | YGGCCR | 2 cut(s) | 529, 2244 |
| Eam1104I | CTCTTC | 6 cut(s) | 483, 1404, 1751, 1752, 2328, 2574 |
| EarI | CTCTTC | 6 cut(s) | 483, 1404, 1751, 1752, 2328, 2574 |
| EciI | GGCGGA | 1 cut(s) | 3256 |
| Eco130I | CCWWGG | 3 cut(s) | 1926, 2104, 2415 |
| Eco31I | GGTCTC | 2 cut(s) | 235, 599 |
| Eco47I | GGWCC | 2 cut(s) | 1460, 2412 |
| Eco57I | CTGAAG | 8 cut(s) | 1097, 1283, 1385, 1677, 2537, 3027, 3326, 3346 |
| Eco81I | CCTNAGG | 1 cut(s) | 2163 |
| Eco88I | CYCGRG | 1 cut(s) | 2152 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1452 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1850, 2412 |
| EcoRI | GAATTC | 1 cut(s) | 3013 |
| EcoRII | CCWGG | 2 cut(s) | 553, 1453 |
| EcoT14I | CCWWGG | 3 cut(s) | 1926, 2104, 2415 |
| EcoT22I | ATGCAT | 1 cut(s) | 761 |
| ErhI | CCWWGG | 3 cut(s) | 1926, 2104, 2415 |
| Esp3I | CGTCTC | 2 cut(s) | 127, 2213 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1420, 1452 |
| FaqI | GGGAC | 3 cut(s) | 1318, 2238, 2425 |
| FauNDI | CATATG | 1 cut(s) | 640 |
| FbaI | TGATCA | 2 cut(s) | 1213, 2263 |
| FblI | GTMKAC | 2 cut(s) | 2822, 2850 |
| Fnu4HI | GCNGC | 6 cut(s) | 909, 2471, 2595, 2598, 2878, 3226 |
| FokI | GGATG | 8 cut(s) | 232, 293, 768, 1553, 1877, 2778, 2794, 3080 |
| Fsp4HI | GCNGC | 6 cut(s) | 909, 2471, 2595, 2598, 2878, 3226 |
| FspBI | CTAG | 7 cut(s) | 306, 321, 1449, 2216, 2312, 2465, 3044 |
| GlaI | GCGC | 2 cut(s) | 1680, 3229 |
| GluI | GCNGC | 6 cut(s) | 909, 2471, 2595, 2598, 2878, 3226 |
| GsuI | CTGGAG | 3 cut(s) | 1854, 2785, 2935 |
| HaeIII | GGCC | 3 cut(s) | 531, 1851, 2246 |
| HapII | CCGG | 7 cut(s) | 790, 839, 972, 1011, 1682, 2285, 3375 |
| HgaI | GACGC | 3 cut(s) | 92, 2833, 2861 |
| HhaI | GCGC | 2 cut(s) | 1681, 3230 |
| Hin1I | GRCGYC | 3 cut(s) | 5, 2825, 2853 |
| Hin6I | GCGC | 2 cut(s) | 1679, 3228 |
| HinP1I | GCGC | 2 cut(s) | 1679, 3228 |
| HincII | GTYRAC | 3 cut(s) | 2733, 2823, 2851 |
| HindII | GTYRAC | 3 cut(s) | 2733, 2823, 2851 |
| HindIII | AAGCTT | 2 cut(s) | 1265, 2298 |
| HpaII | CCGG | 7 cut(s) | 790, 839, 972, 1011, 1682, 2285, 3375 |
| HphI | GGTGA | 9 cut(s) | 233, 395, 1333, 1835, 1876, 2039, 2299, 2431, 3199 |
| Hpy166II | GTNNAC | 9 cut(s) | 1066, 1324, 1463, 1903, 1976, 2071, 2733, 2823, 2851 |
| Hpy8I | GTNNAC | 9 cut(s) | 1066, 1324, 1463, 1903, 1976, 2071, 2733, 2823, 2851 |
| Hpy99I | CGWCG | 4 cut(s) | 10, 2447, 2827, 2855 |
| HpyCH4IV | ACGT | 6 cut(s) | 136, 559, 1205, 2042, 2255, 2895 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 731, 1108, 1258, 2470, 2824, 2852, 3325 |
| HpySE526I | ACGT | 6 cut(s) | 136, 559, 1205, 2042, 2255, 2895 |
| Hsp92I | GRCGYC | 3 cut(s) | 5, 2825, 2853 |
| HspAI | GCGC | 2 cut(s) | 1679, 3228 |
| Kpn2I | TCCGGA | 1 cut(s) | 838 |
| Ksp22I | TGATCA | 2 cut(s) | 1213, 2263 |
| LguI | GCTCTTC | 1 cut(s) | 1752 |
| LmnI | GCTCC | 2 cut(s) | 2691, 2954 |
| Lsp1109I | GCAGC | 4 cut(s) | 895, 2482, 2609, 2889 |
| LweI | GCATC | 5 cut(s) | 746, 1111, 1855, 2617, 2673 |
| MaeI | CTAG | 7 cut(s) | 306, 321, 1449, 2216, 2312, 2465, 3044 |
| MaeII | ACGT | 6 cut(s) | 136, 559, 1205, 2042, 2255, 2895 |
| MaeIII | GTNAC | 8 cut(s) | 1071, 1390, 1823, 2143, 2209, 2287, 2435, 3114 |
| MflI | RGATCY | 8 cut(s) | 19, 121, 1691, 2079, 2203, 2973, 3170, 3333 |
| MhlI | GDGCHC | 2 cut(s) | 1045, 2073 |
| MlsI | TGGCCA | 2 cut(s) | 531, 2246 |
| MluNI | TGGCCA | 2 cut(s) | 531, 2246 |
| MlyI | GAGTC | 6 cut(s) | 279, 926, 1613, 1737, 2039, 2151 |
| MmeI | TCCRAC | 5 cut(s) | 239, 1275, 2339, 2357, 2951 |
| Mox20I | TGGCCA | 2 cut(s) | 531, 2246 |
| Mph1103I | ATGCAT | 1 cut(s) | 761 |
| MroI | TCCGGA | 1 cut(s) | 838 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1632 |
| MscI | TGGCCA | 2 cut(s) | 531, 2246 |
| MseI | TTAA | 7 cut(s) | 762, 938, 1199, 2339, 2661, 2703, 2978 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1711 |
| Msp20I | TGGCCA | 2 cut(s) | 531, 2246 |
| MspA1I | CMGCKG | 1 cut(s) | 2557 |
| MspI | CCGG | 7 cut(s) | 790, 839, 972, 1011, 1682, 2285, 3375 |
| MspR9I | CCNGG | 4 cut(s) | 555, 973, 1455, 1683 |
| Mva1269I | GAATGC | 2 cut(s) | 856, 2157 |
| MvaI | CCWGG | 2 cut(s) | 555, 1455 |
| MvnI | CGCG | 4 cut(s) | 103, 1751, 2590, 3228 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 731, 1108, 1258, 2470, 2824, 2852, 3325 |
| NciI | CCSGG | 2 cut(s) | 973, 1683 |
| NcoI | CCATGG | 1 cut(s) | 1926 |
| NdeI | CATATG | 1 cut(s) | 640 |
| NlaIV | GGNNCC | 4 cut(s) | 1693, 1852, 2413, 3172 |
| NmeAIII | GCCGAG | 2 cut(s) | 880, 1278 |
| NmuCI | GTSAC | 6 cut(s) | 1823, 2143, 2209, 2287, 2435, 3114 |
| NruI | TCGCGA | 1 cut(s) | 1751 |
| NsiI | ATGCAT | 1 cut(s) | 761 |
| NspI | RCATGY | 3 cut(s) | 1831, 2283, 3058 |
| NspV | TTCGAA | 1 cut(s) | 416 |
| PciI | ACATGT | 3 cut(s) | 1827, 2279, 3054 |
| PciSI | GCTCTTC | 1 cut(s) | 1752 |
| PctI | GAATGC | 2 cut(s) | 856, 2157 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1632 |
| PfeI | GAWTC | 9 cut(s) | 632, 864, 1226, 1298, 1355, 1493, 1934, 2350, 2641 |
| Pfl23II | CGTACG | 1 cut(s) | 560 |
| PflFI | GACNNNGTC | 1 cut(s) | 3112 |
| PfoI | TCCNGGA | 1 cut(s) | 553 |
| PkrI | GCNGC | 6 cut(s) | 910, 2472, 2596, 2599, 2879, 3227 |
| PleI | GAGTC | 6 cut(s) | 279, 925, 1613, 1737, 2038, 2150 |
| PpsI | GAGTC | 6 cut(s) | 279, 925, 1613, 1737, 2038, 2150 |
| PpuMI | RGGWCCY | 1 cut(s) | 2412 |
| PscI | ACATGT | 3 cut(s) | 1827, 2279, 3054 |
| PsiI | TTATAA | 1 cut(s) | 968 |
| Psp5II | RGGWCCY | 1 cut(s) | 2412 |
| Psp6I | CCWGG | 2 cut(s) | 553, 1453 |
| PspGI | CCWGG | 2 cut(s) | 553, 1453 |
| PspLI | CGTACG | 1 cut(s) | 560 |
| PspN4I | GGNNCC | 4 cut(s) | 1693, 1852, 2413, 3172 |
| PspPI | GGNCC | 3 cut(s) | 1460, 1850, 2412 |
| PspPPI | RGGWCCY | 1 cut(s) | 2412 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1564, 1596 |
| PstI | CTGCAG | 1 cut(s) | 913 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2439 |
| PsuI | RGATCY | 8 cut(s) | 19, 121, 1691, 2079, 2203, 2973, 3170, 3333 |
| PsyI | GACNNNGTC | 1 cut(s) | 3112 |
| RruI | TCGCGA | 1 cut(s) | 1751 |
| RsaI | GTAC | 5 cut(s) | 562, 1067, 1283, 1573, 1646 |
| RsaNI | GTAC | 5 cut(s) | 561, 1066, 1282, 1572, 1645 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1711 |
| SalI | GTCGAC | 2 cut(s) | 2821, 2849 |
| SapI | GCTCTTC | 1 cut(s) | 1752 |
| SaqAI | TTAA | 7 cut(s) | 762, 938, 1199, 2339, 2661, 2703, 2978 |
| SatI | GCNGC | 6 cut(s) | 909, 2471, 2595, 2598, 2878, 3226 |
| Sau96I | GGNCC | 3 cut(s) | 1460, 1850, 2412 |
| SchI | GAGTC | 6 cut(s) | 279, 926, 1613, 1737, 2039, 2151 |
| ScrFI | CCNGG | 4 cut(s) | 555, 973, 1455, 1683 |
| SduI | GDGCHC | 2 cut(s) | 1045, 2073 |
| SfaNI | GCATC | 5 cut(s) | 746, 1111, 1855, 2617, 2673 |
| SfcI | CTRYAG | 1 cut(s) | 909 |
| SfuI | TTCGAA | 1 cut(s) | 416 |
| SinI | GGWCC | 2 cut(s) | 1460, 2412 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1711 |
| SmlI | CTYRAG | 1 cut(s) | 2750 |
| SmoI | CTYRAG | 1 cut(s) | 2750 |
| SsiI | CCGC | 7 cut(s) | 666, 1235, 1458, 2557, 2594, 3226, 3267 |
| SspMI | CTAG | 7 cut(s) | 306, 321, 1449, 2216, 2312, 2465, 3044 |
| StyD4I | CCNGG | 4 cut(s) | 553, 971, 1453, 1681 |
| StyI | CCWWGG | 3 cut(s) | 1926, 2104, 2415 |
| TaiI | ACGT | 6 cut(s) | 139, 562, 1208, 2045, 2258, 2898 |
| TaqI | TCGA | 9 cut(s) | 416, 891, 1171, 1964, 1982, 2022, 2822, 2850, 3021 |
| TatI | WGTACW | 2 cut(s) | 1065, 1281 |
| TauI | GCSGC | 2 cut(s) | 2597, 3228 |
| TfiI | GAWTC | 9 cut(s) | 632, 864, 1226, 1298, 1355, 1493, 1934, 2350, 2641 |
| Tru1I | TTAA | 7 cut(s) | 762, 938, 1199, 2339, 2661, 2703, 2978 |
| Tru9I | TTAA | 7 cut(s) | 762, 938, 1199, 2339, 2661, 2703, 2978 |
| TseFI | GTSAC | 6 cut(s) | 1823, 2143, 2209, 2287, 2435, 3114 |
| TseI | GCWGC | 4 cut(s) | 908, 2470, 2597, 2877 |
| Tsp45I | GTSAC | 6 cut(s) | 1823, 2143, 2209, 2287, 2435, 3114 |
| TspDTI | ATGAA | 8 cut(s) | 624, 732, 810, 939, 1302, 1581, 2161, 2552 |
| TspGWI | ACGGA | 6 cut(s) | 238, 333, 1560, 1897, 2449, 2583 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3112 |
| VneI | GTGCAC | 1 cut(s) | 2069 |
| VpaK11BI | GGWCC | 2 cut(s) | 1460, 2412 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1452 |
| XapI | RAATTY | 4 cut(s) | 784, 1966, 3013, 3079 |
| XceI | RCATGY | 3 cut(s) | 1831, 2283, 3058 |
| XmiI | GTMKAC | 2 cut(s) | 2822, 2850 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1632 |
| XspI | CTAG | 7 cut(s) | 306, 321, 1449, 2216, 2312, 2465, 3044 |
| Zsp2I | ATGCAT | 1 cut(s) | 761 |