RING-type E3 ubiquitin transferase
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g44280 |
| malus_domestica | MD11G1016300.v1.1 |
| prunus_persica | Prupe.6G014500_v2.0.a1 |
| pyrus_communis | pycom11g01150 |
| rosa_chinensis | RchiOBHm_Chr5g0080651 |
| rosa_laevigata | RLG00000036879 |
| rosa_multiflora | Rmu_sc0002380.1_g000007 Rmu_sc0039404.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00002750 |
| rosa_rugosa | Rorug05G0470900 |
| rosa_samantha | Rh5AG524200 Rh5BG546500 Rh5CG569700 Rh5DG556700 |
| rosa_wichuraiana | Rw5G048630 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1897 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 447, 501 |
| AccBSI | CCGCTC | 1 cut(s) | 2269 |
| AccI | GTMKAC | 1 cut(s) | 310 |
| AccII | CGCG | 1 cut(s) | 1686 |
| AccIII | TCCGGA | 1 cut(s) | 969 |
| AciI | CCGC | 6 cut(s) | 82, 336, 844, 1640, 1684, 2269 |
| AclWI | GGATC | 6 cut(s) | 292, 546, 1928, 2228, 2454, 2467 |
| AcoI | YGGCCR | 3 cut(s) | 1681, 2254, 2847 |
| AcsI | RAATTY | 7 cut(s) | 1868, 1971, 2077, 2359, 3145, 3208, 3462 |
| AcuI | CTGAAG | 9 cut(s) | 1277, 1463, 1599, 2160, 2702, 3443, 3455, 3475, 3588 |
| AcvI | CACGTG | 1 cut(s) | 2621 |
| AfaI | GTAC | 6 cut(s) | 180, 193, 1463, 1796, 2349, 3233 |
| AfeI | AGCGCT | 1 cut(s) | 3048 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 447, 501, 1240, 1799, 2216, 2268, 2321, 2889, 3510 |
| AflIII | ACRYGT | 3 cut(s) | 739, 2309, 2620 |
| AjiI | CACGTC | 1 cut(s) | 740 |
| AjnI | CCWGG | 5 cut(s) | 886, 1056, 1630, 2193, 2895 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 115, 147 |
| Alw21I | GWGCWC | 5 cut(s) | 791, 1225, 3361, 3450, 3459 |
| Alw26I | GTCTC | 6 cut(s) | 15, 121, 240, 1821, 2243, 3483 |
| AlwI | GGATC | 6 cut(s) | 292, 546, 1928, 2228, 2454, 2467 |
| Aor13HI | TCCGGA | 1 cut(s) | 969 |
| Aor51HI | AGCGCT | 1 cut(s) | 3048 |
| AoxI | GGCC | 6 cut(s) | 912, 1430, 1681, 2254, 2847, 2891 |
| ApoI | RAATTY | 7 cut(s) | 1868, 1971, 2077, 2359, 3145, 3208, 3462 |
| AspLEI | GCGC | 2 cut(s) | 1688, 3049 |
| AspS9I | GGNCC | 5 cut(s) | 19, 1430, 1637, 2442, 2892 |
| AsuC2I | CCSGG | 1 cut(s) | 1593 |
| AsuHPI | GGTGA | 6 cut(s) | 95, 1299, 1814, 1979, 2848, 3149 |
| AsuII | TTCGAA | 1 cut(s) | 2075 |
| AsuNHI | GCTAGC | 1 cut(s) | 386 |
| AvaII | GGWCC | 3 cut(s) | 19, 1637, 2442 |
| AxyI | CCTNAGG | 1 cut(s) | 2446 |
| BalI | TGGCCA | 2 cut(s) | 2256, 2849 |
| BamHI | GGATCC | 1 cut(s) | 2459 |
| BanI | GGYRCC | 1 cut(s) | 1897 |
| BanII | GRGCYC | 1 cut(s) | 791 |
| BbrPI | CACGTG | 1 cut(s) | 2621 |
| BbsI | GAAGAC | 1 cut(s) | 3168 |
| Bbv12I | GWGCWC | 5 cut(s) | 791, 1225, 3361, 3450, 3459 |
| BbvCI | CCTCAGC | 1 cut(s) | 1092 |
| BccI | CCATC | 9 cut(s) | 29, 108, 1562, 1715, 1757, 2285, 2827, 3517, 3608 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1315, 1349, 3018, 3052 |
| BciT130I | CCWGG | 5 cut(s) | 888, 1058, 1632, 2195, 2897 |
| BciVI | GTATCC | 1 cut(s) | 3248 |
| BclI | TGATCA | 2 cut(s) | 1015, 1393 |
| BcnI | CCSGG | 1 cut(s) | 1593 |
| BcoDI | GTCTC | 6 cut(s) | 15, 121, 240, 1821, 2243, 3483 |
| BfmI | CTRYAG | 2 cut(s) | 3339, 3554 |
| BfoI | RGCGCY | 1 cut(s) | 3050 |
| BfuI | GTATCC | 1 cut(s) | 3248 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2282 |
| BglII | AGATCT | 1 cut(s) | 1114 |
| Bme1390I | CCNGG | 6 cut(s) | 888, 1058, 1593, 1632, 2195, 2897 |
| Bme18I | GGWCC | 3 cut(s) | 19, 1637, 2442 |
| BmgBI | CACGTC | 1 cut(s) | 740 |
| BmgT120I | GGNCC | 5 cut(s) | 19, 1430, 1637, 2442, 2892 |
| BmiI | GGNNCC | 4 cut(s) | 1899, 2443, 2461, 2894 |
| BmrFI | CCNGG | 6 cut(s) | 888, 1058, 1593, 1632, 2195, 2897 |
| BmtI | GCTAGC | 1 cut(s) | 390 |
| BoxI | GACNNNNGTC | 1 cut(s) | 486 |
| BpiI | GAAGAC | 1 cut(s) | 3168 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 237, 269 |
| BpmI | CTGGAG | 1 cut(s) | 35 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1092, 1902 |
| Bpu14I | TTCGAA | 1 cut(s) | 2075 |
| BpuEI | CTTGAG | 1 cut(s) | 2931 |
| BpuMI | CCSGG | 1 cut(s) | 1593 |
| BsaAI | YACGTR | 1 cut(s) | 2621 |
| BsaBI | GATNNNNATC | 2 cut(s) | 180, 1186 |
| BsaJI | CCNNGG | 4 cut(s) | 1433, 2193, 2895, 3250 |
| BsaWI | WCCGGW | 1 cut(s) | 969 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 447, 501, 1240, 1799, 2216, 2268, 2321, 2889, 3510 |
| Bse21I | CCTNAGG | 1 cut(s) | 2446 |
| Bse3DI | GCAATG | 3 cut(s) | 1074, 1089, 3163 |
| Bse8I | GATNNNNATC | 2 cut(s) | 180, 1186 |
| BseAI | TCCGGA | 1 cut(s) | 969 |
| BseBI | CCWGG | 5 cut(s) | 888, 1058, 1632, 2195, 2897 |
| BseDI | CCNNGG | 4 cut(s) | 1433, 2193, 2895, 3250 |
| BseGI | GGATG | 7 cut(s) | 208, 871, 1554, 2570, 2838, 3202, 3330 |
| BseJI | GATNNNNATC | 2 cut(s) | 180, 1186 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 447, 501, 1240, 1799, 2216, 2268, 2321, 2889, 3510 |
| BseMI | GCAATG | 3 cut(s) | 1074, 1089, 3163 |
| BseMII | CTCAG | 7 cut(s) | 271, 543, 1026, 1083, 1249, 1893, 2460 |
| BseRI | GAGGAG | 5 cut(s) | 245, 707, 974, 977, 1109 |
| BsgI | GTGCAG | 2 cut(s) | 1839, 3529 |
| Bsh1236I | CGCG | 1 cut(s) | 1686 |
| BshFI | GGCC | 6 cut(s) | 914, 1432, 1683, 2256, 2849, 2893 |
| BshNI | GGYRCC | 1 cut(s) | 1897 |
| BsiHKAI | GWGCWC | 5 cut(s) | 791, 1225, 3361, 3450, 3459 |
| BsiSI | CCGG | 3 cut(s) | 545, 970, 1592 |
| BslFI | GGGAC | 4 cut(s) | 252, 1361, 1498, 2455 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 447, 501, 1240, 1799, 2216, 2268, 2321, 2889, 3510 |
| BsmAI | GTCTC | 6 cut(s) | 15, 121, 240, 1821, 2243, 3483 |
| BsmBI | CGTCTC | 2 cut(s) | 15, 240 |
| BsmFI | GGGAC | 4 cut(s) | 252, 1361, 1498, 2455 |
| BsmI | GAATGC | 2 cut(s) | 1545, 3069 |
| BsnI | GGCC | 6 cut(s) | 914, 1432, 1683, 2256, 2849, 2893 |
| Bsp119I | TTCGAA | 1 cut(s) | 2075 |
| Bsp1286I | GDGCHC | 5 cut(s) | 791, 1225, 3361, 3450, 3459 |
| Bsp13I | TCCGGA | 1 cut(s) | 969 |
| Bsp1407I | TGTACA | 2 cut(s) | 178, 1461 |
| BspACI | CCGC | 6 cut(s) | 82, 336, 844, 1640, 1684, 2269 |
| BspANI | GGCC | 6 cut(s) | 914, 1432, 1683, 2256, 2849, 2893 |
| BspCNI | CTCAG | 7 cut(s) | 270, 544, 1027, 1084, 1248, 1894, 2459 |
| BspEI | TCCGGA | 1 cut(s) | 969 |
| BspFNI | CGCG | 1 cut(s) | 1686 |
| BspHI | TCATGA | 1 cut(s) | 793 |
| BspLI | GGNNCC | 4 cut(s) | 1899, 2443, 2461, 2894 |
| BspMAI | CTGCAG | 1 cut(s) | 3343 |
| BspOI | GCTAGC | 1 cut(s) | 390 |
| BspPI | GGATC | 6 cut(s) | 292, 546, 1928, 2228, 2454, 2467 |
| BspQI | GCTCTTC | 2 cut(s) | 1020, 1117 |
| BspT104I | TTCGAA | 1 cut(s) | 2075 |
| BspT107I | GGYRCC | 1 cut(s) | 1897 |
| BsrBI | CCGCTC | 1 cut(s) | 2269 |
| BsrDI | GCAATG | 3 cut(s) | 1074, 1089, 3163 |
| BsrGI | TGTACA | 2 cut(s) | 178, 1461 |
| BssECI | CCNNGG | 4 cut(s) | 1433, 2193, 2895, 3250 |
| BssT1I | CCWWGG | 2 cut(s) | 1433, 3250 |
| Bst2UI | CCWGG | 5 cut(s) | 888, 1058, 1632, 2195, 2897 |
| Bst4CI | ACNGT | 9 cut(s) | 629, 716, 1665, 1794, 2071, 2589, 2700, 3167, 3443 |
| Bst6I | CTCTTC | 8 cut(s) | 259, 461, 1020, 1117, 1581, 2136, 2604, 2777 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 1088, 1288, 2636, 2981 |
| BstAUI | TGTACA | 2 cut(s) | 178, 1461 |
| BstBAI | YACGTR | 1 cut(s) | 2621 |
| BstBI | TTCGAA | 1 cut(s) | 2075 |
| BstC8I | GCNNGC | 8 cut(s) | 80, 388, 783, 787, 1032, 2570, 2683, 2819 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2319 |
| BstF5I | GGATG | 7 cut(s) | 208, 871, 1554, 2570, 2838, 3202, 3330 |
| BstFNI | CGCG | 1 cut(s) | 1686 |
| BstH2I | RGCGCY | 1 cut(s) | 3050 |
| BstHHI | GCGC | 2 cut(s) | 1688, 3049 |
| BstMAI | GTCTC | 6 cut(s) | 15, 121, 240, 1821, 2243, 3483 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 911, 1088, 1288, 1588, 2282, 2500, 2636, 2981, 3454 |
| BstNI | CCWGG | 5 cut(s) | 888, 1058, 1632, 2195, 2897 |
| BstNSI | RCATGY | 2 cut(s) | 1034, 2313 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 486 |
| BstSCI | CCNGG | 6 cut(s) | 886, 1056, 1591, 1630, 2193, 2895 |
| BstSFI | CTRYAG | 2 cut(s) | 3339, 3554 |
| BstUI | CGCG | 1 cut(s) | 1686 |
| BstV2I | GAAGAC | 1 cut(s) | 3168 |
| BstX2I | RGATCY | 3 cut(s) | 1114, 2233, 2459 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 734 |
| BstYI | RGATCY | 3 cut(s) | 1114, 2233, 2459 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2446 |
| BsuI | GTATCC | 1 cut(s) | 3248 |
| BsuRI | GGCC | 6 cut(s) | 914, 1432, 1683, 2256, 2849, 2893 |
| BtgZI | GCGATG | 1 cut(s) | 231 |
| BtrI | CACGTC | 1 cut(s) | 740 |
| BtsCI | GGATG | 7 cut(s) | 208, 871, 1554, 2570, 2838, 3202, 3330 |
| BtsI | GCAGTG | 3 cut(s) | 1680, 2757, 3336 |
| Cac8I | GCNNGC | 8 cut(s) | 80, 388, 783, 787, 1032, 2570, 2683, 2819 |
| CciI | TCATGA | 1 cut(s) | 793 |
| CfoI | GCGC | 2 cut(s) | 1688, 3049 |
| Cfr13I | GGNCC | 5 cut(s) | 19, 1430, 1637, 2442, 2892 |
| CsiI | ACCWGGT | 1 cut(s) | 886 |
| Csp6I | GTAC | 6 cut(s) | 179, 192, 1462, 1795, 2348, 3232 |
| CviQI | GTAC | 6 cut(s) | 179, 192, 1462, 1795, 2348, 3232 |
| DraI | TTTAAA | 3 cut(s) | 357, 411, 1380 |
| EaeI | YGGCCR | 3 cut(s) | 1681, 2254, 2847 |
| Eam1104I | CTCTTC | 8 cut(s) | 259, 461, 1020, 1117, 1581, 2136, 2604, 2777 |
| EarI | CTCTTC | 8 cut(s) | 259, 461, 1020, 1117, 1581, 2136, 2604, 2777 |
| Ecl136II | GAGCTC | 1 cut(s) | 789 |
| Eco130I | CCWWGG | 2 cut(s) | 1433, 3250 |
| Eco24I | GRGCYC | 1 cut(s) | 791 |
| Eco47I | GGWCC | 3 cut(s) | 19, 1637, 2442 |
| Eco47III | AGCGCT | 1 cut(s) | 3048 |
| Eco53kI | GAGCTC | 1 cut(s) | 789 |
| Eco57I | CTGAAG | 9 cut(s) | 1277, 1463, 1599, 2160, 2702, 3443, 3455, 3475, 3588 |
| Eco72I | CACGTG | 1 cut(s) | 2621 |
| Eco81I | CCTNAGG | 1 cut(s) | 2446 |
| EcoICRI | GAGCTC | 1 cut(s) | 789 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2319 |
| EcoO109I | RGGNCCY | 3 cut(s) | 19, 2442, 2892 |
| EcoRI | GAATTC | 3 cut(s) | 1868, 2077, 3145 |
| EcoRII | CCWGG | 5 cut(s) | 886, 1056, 1630, 2193, 2895 |
| EcoT14I | CCWWGG | 2 cut(s) | 1433, 3250 |
| EcoT22I | ATGCAT | 1 cut(s) | 3069 |
| EcoT38I | GRGCYC | 1 cut(s) | 791 |
| ErhI | CCWWGG | 2 cut(s) | 1433, 3250 |
| Esp3I | CGTCTC | 2 cut(s) | 15, 240 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1114, 1146, 2119, 2151, 3036, 3068 |
| FaqI | GGGAC | 4 cut(s) | 252, 1361, 1498, 2455 |
| FauI | CCCGC | 1 cut(s) | 329 |
| FbaI | TGATCA | 2 cut(s) | 1015, 1393 |
| FblI | GTMKAC | 1 cut(s) | 310 |
| FokI | GGATG | 7 cut(s) | 215, 858, 1541, 2577, 2845, 3209, 3337 |
| FriOI | GRGCYC | 1 cut(s) | 791 |
| GlaI | GCGC | 2 cut(s) | 1687, 3048 |
| GsuI | CTGGAG | 1 cut(s) | 35 |
| HaeII | RGCGCY | 1 cut(s) | 3050 |
| HaeIII | GGCC | 6 cut(s) | 914, 1432, 1683, 2256, 2849, 2893 |
| HapII | CCGG | 3 cut(s) | 545, 970, 1592 |
| HhaI | GCGC | 2 cut(s) | 1688, 3049 |
| Hin6I | GCGC | 2 cut(s) | 1686, 3047 |
| HinP1I | GCGC | 2 cut(s) | 1686, 3047 |
| HincII | GTYRAC | 3 cut(s) | 760, 1158, 2734 |
| HindII | GTYRAC | 3 cut(s) | 760, 1158, 2734 |
| HindIII | AAGCTT | 3 cut(s) | 1445, 1735, 2328 |
| HpaI | GTTAAC | 2 cut(s) | 760, 2734 |
| HpaII | CCGG | 3 cut(s) | 545, 970, 1592 |
| HphI | GGTGA | 6 cut(s) | 95, 1299, 1814, 1979, 2848, 3149 |
| Hpy166II | GTNNAC | 6 cut(s) | 311, 760, 1158, 1462, 1504, 2734 |
| Hpy8I | GTNNAC | 6 cut(s) | 311, 760, 1158, 1462, 1504, 2734 |
| HpyCH4III | ACNGT | 9 cut(s) | 629, 716, 1665, 1794, 2071, 2589, 2700, 3167, 3443 |
| HpyCH4IV | ACGT | 2 cut(s) | 739, 2620 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 911, 1088, 1288, 1588, 2282, 2500, 2636, 2981, 3454 |
| HpySE526I | ACGT | 2 cut(s) | 739, 2620 |
| HspAI | GCGC | 2 cut(s) | 1686, 3047 |
| Kpn2I | TCCGGA | 1 cut(s) | 969 |
| Ksp22I | TGATCA | 2 cut(s) | 1015, 1393 |
| KspAI | GTTAAC | 2 cut(s) | 760, 2734 |
| LguI | GCTCTTC | 2 cut(s) | 1020, 1117 |
| LmnI | GCTCC | 4 cut(s) | 2023, 2032, 2710, 3396 |
| MabI | ACCWGGT | 1 cut(s) | 886 |
| MaeII | ACGT | 2 cut(s) | 739, 2620 |
| MaeIII | GTNAC | 5 cut(s) | 1946, 2239, 2317, 3179, 3571 |
| MbiI | CCGCTC | 1 cut(s) | 2269 |
| MflI | RGATCY | 3 cut(s) | 1114, 2233, 2459 |
| MhlI | GDGCHC | 5 cut(s) | 791, 1225, 3361, 3450, 3459 |
| MlsI | TGGCCA | 2 cut(s) | 2256, 2849 |
| MluNI | TGGCCA | 2 cut(s) | 2256, 2849 |
| MlyI | GAGTC | 3 cut(s) | 1106, 1472, 2236 |
| MmeI | TCCRAC | 3 cut(s) | 1961, 2369, 2437 |
| Mox20I | TGGCCA | 2 cut(s) | 2256, 2849 |
| Mph1103I | ATGCAT | 1 cut(s) | 3069 |
| MroI | TCCGGA | 1 cut(s) | 969 |
| MscI | TGGCCA | 2 cut(s) | 2256, 2849 |
| MslI | CAYNNNNRTG | 4 cut(s) | 186, 441, 495, 2472 |
| Msp20I | TGGCCA | 2 cut(s) | 2256, 2849 |
| MspI | CCGG | 3 cut(s) | 545, 970, 1592 |
| MspR9I | CCNGG | 6 cut(s) | 888, 1058, 1593, 1632, 2195, 2897 |
| Mva1269I | GAATGC | 2 cut(s) | 1545, 3069 |
| MvaI | CCWGG | 5 cut(s) | 888, 1058, 1632, 2195, 2897 |
| MvnI | CGCG | 1 cut(s) | 1686 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 911, 1088, 1288, 1588, 2282, 2500, 2636, 2981, 3454 |
| NciI | CCSGG | 1 cut(s) | 1593 |
| NheI | GCTAGC | 1 cut(s) | 386 |
| NlaIV | GGNNCC | 4 cut(s) | 1899, 2443, 2461, 2894 |
| NmeAIII | GCCGAG | 1 cut(s) | 3380 |
| NmuCI | GTSAC | 4 cut(s) | 1946, 2239, 2317, 3179 |
| NsiI | ATGCAT | 1 cut(s) | 3069 |
| NspI | RCATGY | 2 cut(s) | 1034, 2313 |
| NspV | TTCGAA | 1 cut(s) | 2075 |
| PaeI | GCATGC | 1 cut(s) | 1034 |
| PagI | TCATGA | 1 cut(s) | 793 |
| PciI | ACATGT | 1 cut(s) | 2309 |
| PciSI | GCTCTTC | 2 cut(s) | 1020, 1117 |
| PctI | GAATGC | 2 cut(s) | 1545, 3069 |
| PfeI | GAWTC | 8 cut(s) | 1304, 1406, 1535, 1841, 1887, 2336, 2671, 3377 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 447, 501 |
| PleI | GAGTC | 3 cut(s) | 1105, 1472, 2236 |
| PmaCI | CACGTG | 1 cut(s) | 2621 |
| PmlI | CACGTG | 1 cut(s) | 2621 |
| PpsI | GAGTC | 3 cut(s) | 1105, 1472, 2236 |
| Ppu21I | YACGTR | 1 cut(s) | 2621 |
| PpuMI | RGGWCCY | 2 cut(s) | 19, 2442 |
| PscI | ACATGT | 1 cut(s) | 2309 |
| PshAI | GACNNNNGTC | 1 cut(s) | 486 |
| Psp124BI | GAGCTC | 1 cut(s) | 791 |
| Psp5II | RGGWCCY | 2 cut(s) | 19, 2442 |
| Psp6I | CCWGG | 5 cut(s) | 886, 1056, 1630, 2193, 2895 |
| PspCI | CACGTG | 1 cut(s) | 2621 |
| PspGI | CCWGG | 5 cut(s) | 886, 1056, 1630, 2193, 2895 |
| PspN4I | GGNNCC | 4 cut(s) | 1899, 2443, 2461, 2894 |
| PspPI | GGNCC | 5 cut(s) | 19, 1430, 1637, 2442, 2892 |
| PspPPI | RGGWCCY | 2 cut(s) | 19, 2442 |
| PstI | CTGCAG | 1 cut(s) | 3343 |
| PsuI | RGATCY | 3 cut(s) | 1114, 2233, 2459 |
| RsaI | GTAC | 6 cut(s) | 180, 193, 1463, 1796, 2349, 3233 |
| RsaNI | GTAC | 6 cut(s) | 179, 192, 1462, 1795, 2348, 3232 |
| RseI | CAYNNNNRTG | 4 cut(s) | 186, 441, 495, 2472 |
| SacI | GAGCTC | 1 cut(s) | 791 |
| SapI | GCTCTTC | 2 cut(s) | 1020, 1117 |
| Sau96I | GGNCC | 5 cut(s) | 19, 1430, 1637, 2442, 2892 |
| SchI | GAGTC | 3 cut(s) | 1106, 1472, 2236 |
| ScrFI | CCNGG | 6 cut(s) | 888, 1058, 1593, 1632, 2195, 2897 |
| SduI | GDGCHC | 5 cut(s) | 791, 1225, 3361, 3450, 3459 |
| SexAI | ACCWGGT | 1 cut(s) | 886 |
| SfcI | CTRYAG | 2 cut(s) | 3339, 3554 |
| SfuI | TTCGAA | 1 cut(s) | 2075 |
| SinI | GGWCC | 3 cut(s) | 19, 1637, 2442 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 186, 441, 495, 2472 |
| SmlI | CTYRAG | 1 cut(s) | 2946 |
| SmoI | CTYRAG | 1 cut(s) | 2946 |
| SphI | GCATGC | 1 cut(s) | 1034 |
| SsiI | CCGC | 6 cut(s) | 82, 336, 844, 1640, 1684, 2269 |
| SspI | AATATT | 2 cut(s) | 635, 3221 |
| SstI | GAGCTC | 1 cut(s) | 791 |
| StyD4I | CCNGG | 6 cut(s) | 886, 1056, 1591, 1630, 2193, 2895 |
| StyI | CCWWGG | 2 cut(s) | 1433, 3250 |
| TaaI | ACNGT | 9 cut(s) | 629, 716, 1665, 1794, 2071, 2589, 2700, 3167, 3443 |
| TaiI | ACGT | 2 cut(s) | 742, 2623 |
| TaqI | TCGA | 3 cut(s) | 68, 1825, 2075 |
| TatI | WGTACW | 2 cut(s) | 178, 1461 |
| TauI | GCSGC | 2 cut(s) | 846, 1686 |
| TfiI | GAWTC | 8 cut(s) | 1304, 1406, 1535, 1841, 1887, 2336, 2671, 3377 |
| TseFI | GTSAC | 4 cut(s) | 1946, 2239, 2317, 3179 |
| Tsp45I | GTSAC | 4 cut(s) | 1946, 2239, 2317, 3179 |
| TspGWI | ACGGA | 2 cut(s) | 1194, 3273 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 447, 501 |
| VpaK11BI | GGWCC | 3 cut(s) | 19, 1637, 2442 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2319 |
| XapI | RAATTY | 7 cut(s) | 1868, 1971, 2077, 2359, 3145, 3208, 3462 |
| XbaI | TCTAGA | 2 cut(s) | 1976, 2245 |
| XceI | RCATGY | 2 cut(s) | 1034, 2313 |
| XmiI | GTMKAC | 1 cut(s) | 310 |
| Zsp2I | ATGCAT | 1 cut(s) | 3069 |