RING-type E3 ubiquitin transferase
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g44280 |
| malus_domestica | MD11G1016300.v1.1 |
| prunus_persica | Prupe.6G014500_v2.0.a1 |
| pyrus_communis | pycom11g01150 |
| rosa_chinensis | RchiOBHm_Chr5g0080651 |
| rosa_laevigata | RLG00000036879 |
| rosa_multiflora | Rmu_sc0002380.1_g000007 Rmu_sc0039404.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00002750 |
| rosa_rugosa | Rorug05G0470900 |
| rosa_samantha | Rh5AG524200 Rh5BG546500 Rh5CG569700 Rh5DG556700 |
| rosa_wichuraiana | Rw5G048630 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 883 |
| AccB1I | GGYRCC | 1 cut(s) | 1885 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 441, 489 |
| AccBSI | CCGCTC | 1 cut(s) | 2257 |
| AccI | GTMKAC | 1 cut(s) | 304 |
| AccII | CGCG | 1 cut(s) | 1674 |
| AccIII | TCCGGA | 1 cut(s) | 957 |
| AciI | CCGC | 6 cut(s) | 82, 330, 832, 1628, 1672, 2257 |
| AclWI | GGATC | 6 cut(s) | 286, 534, 1916, 2216, 2442, 2455 |
| AcoI | YGGCCR | 3 cut(s) | 1669, 2242, 2835 |
| AcsI | RAATTY | 6 cut(s) | 1856, 1959, 2065, 3133, 3199, 3453 |
| AcuI | CTGAAG | 8 cut(s) | 1265, 1539, 1587, 2148, 2690, 3446, 3466, 3579 |
| AcvI | CACGTG | 1 cut(s) | 2609 |
| AfaI | GTAC | 5 cut(s) | 190, 1451, 1784, 2337, 3523 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 441, 489, 1228, 2204, 2256, 2309, 3501 |
| AflIII | ACRYGT | 3 cut(s) | 727, 2297, 2608 |
| AjiI | CACGTC | 1 cut(s) | 728 |
| AjnI | CCWGG | 4 cut(s) | 1044, 1618, 2181, 2883 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 115, 147 |
| Alw21I | GWGCWC | 5 cut(s) | 779, 989, 1213, 3441, 3450 |
| Alw26I | GTCTC | 5 cut(s) | 15, 121, 1809, 2231, 3474 |
| AlwI | GGATC | 6 cut(s) | 286, 534, 1916, 2216, 2442, 2455 |
| Aor13HI | TCCGGA | 1 cut(s) | 957 |
| AoxI | GGCC | 5 cut(s) | 900, 1418, 1669, 2242, 2835 |
| ApoI | RAATTY | 6 cut(s) | 1856, 1959, 2065, 3133, 3199, 3453 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3146, 3178 |
| AspLEI | GCGC | 1 cut(s) | 1676 |
| AspS9I | GGNCC | 4 cut(s) | 19, 1418, 1625, 2430 |
| AsuHPI | GGTGA | 8 cut(s) | 95, 209, 224, 1287, 1802, 1967, 2836, 3137 |
| AsuII | TTCGAA | 1 cut(s) | 2063 |
| AsuNHI | GCTAGC | 1 cut(s) | 380 |
| AvaII | GGWCC | 3 cut(s) | 19, 1625, 2430 |
| AxyI | CCTNAGG | 1 cut(s) | 2434 |
| BalI | TGGCCA | 2 cut(s) | 2244, 2837 |
| BamHI | GGATCC | 1 cut(s) | 2447 |
| BanI | GGYRCC | 1 cut(s) | 1885 |
| BanII | GRGCYC | 2 cut(s) | 779, 989 |
| BauI | CACGAG | 1 cut(s) | 2693 |
| BbrPI | CACGTG | 1 cut(s) | 2609 |
| BbsI | GAAGAC | 1 cut(s) | 3159 |
| Bbv12I | GWGCWC | 5 cut(s) | 779, 989, 1213, 3441, 3450 |
| BbvCI | CCTCAGC | 1 cut(s) | 1080 |
| BccI | CCATC | 9 cut(s) | 29, 1550, 1703, 1745, 2273, 2815, 3190, 3508, 3599 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1303, 1337, 3006, 3040 |
| BciT130I | CCWGG | 4 cut(s) | 1046, 1620, 2183, 2885 |
| BclI | TGATCA | 2 cut(s) | 1003, 1381 |
| BcoDI | GTCTC | 5 cut(s) | 15, 121, 1809, 2231, 3474 |
| BfmI | CTRYAG | 1 cut(s) | 3330 |
| BfuAI | ACCTGC | 1 cut(s) | 883 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2270 |
| BglII | AGATCT | 1 cut(s) | 1102 |
| Bme1390I | CCNGG | 4 cut(s) | 1046, 1620, 2183, 2885 |
| Bme18I | GGWCC | 3 cut(s) | 19, 1625, 2430 |
| BmgBI | CACGTC | 1 cut(s) | 728 |
| BmgT120I | GGNCC | 4 cut(s) | 19, 1418, 1625, 2430 |
| BmiI | GGNNCC | 3 cut(s) | 1887, 2431, 2449 |
| BmrFI | CCNGG | 4 cut(s) | 1046, 1620, 2183, 2885 |
| BmtI | GCTAGC | 1 cut(s) | 384 |
| BoxI | GACNNNNGTC | 1 cut(s) | 474 |
| BpiI | GAAGAC | 1 cut(s) | 3159 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 234, 266 |
| BpmI | CTGGAG | 3 cut(s) | 35, 1986, 2840 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1080 |
| Bpu14I | TTCGAA | 1 cut(s) | 2063 |
| BpuEI | CTTGAG | 2 cut(s) | 2867, 2919 |
| BsaAI | YACGTR | 1 cut(s) | 2609 |
| BsaBI | GATNNNNATC | 1 cut(s) | 177 |
| BsaJI | CCNNGG | 4 cut(s) | 903, 1421, 2181, 2883 |
| BsaWI | WCCGGW | 1 cut(s) | 957 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 441, 489, 1228, 2204, 2256, 2309, 3501 |
| Bse1I | ACTGG | 7 cut(s) | 435, 483, 2088, 2105, 2225, 2245, 2806 |
| Bse21I | CCTNAGG | 1 cut(s) | 2434 |
| Bse3DI | GCAATG | 2 cut(s) | 1062, 1077 |
| Bse8I | GATNNNNATC | 1 cut(s) | 177 |
| BseAI | TCCGGA | 1 cut(s) | 957 |
| BseBI | CCWGG | 4 cut(s) | 1046, 1620, 2183, 2885 |
| BseDI | CCNNGG | 4 cut(s) | 903, 1421, 2181, 2883 |
| BseGI | GGATG | 6 cut(s) | 859, 1542, 2558, 2826, 3193, 3321 |
| BseJI | GATNNNNATC | 1 cut(s) | 177 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 441, 489, 1228, 2204, 2256, 2309, 3501 |
| BseMI | GCAATG | 2 cut(s) | 1062, 1077 |
| BseMII | CTCAG | 7 cut(s) | 531, 1014, 1071, 1237, 1850, 1881, 2448 |
| BseNI | ACTGG | 7 cut(s) | 435, 483, 2088, 2105, 2225, 2245, 2806 |
| BseRI | GAGGAG | 4 cut(s) | 695, 962, 965, 1097 |
| BseYI | CCCAGC | 1 cut(s) | 1529 |
| BsgI | GTGCAG | 2 cut(s) | 1827, 3520 |
| Bsh1236I | CGCG | 1 cut(s) | 1674 |
| BshFI | GGCC | 5 cut(s) | 902, 1420, 1671, 2244, 2837 |
| BshNI | GGYRCC | 1 cut(s) | 1885 |
| BsiHKAI | GWGCWC | 5 cut(s) | 779, 989, 1213, 3441, 3450 |
| BsiSI | CCGG | 2 cut(s) | 533, 958 |
| BslFI | GGGAC | 4 cut(s) | 249, 1349, 1486, 2443 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 441, 489, 1228, 2204, 2256, 2309, 3501 |
| BsmAI | GTCTC | 5 cut(s) | 15, 121, 1809, 2231, 3474 |
| BsmBI | CGTCTC | 1 cut(s) | 15 |
| BsmFI | GGGAC | 4 cut(s) | 249, 1349, 1486, 2443 |
| BsmI | GAATGC | 2 cut(s) | 1533, 3057 |
| BsnI | GGCC | 5 cut(s) | 902, 1420, 1671, 2244, 2837 |
| Bsp119I | TTCGAA | 1 cut(s) | 2063 |
| Bsp1286I | GDGCHC | 5 cut(s) | 779, 989, 1213, 3441, 3450 |
| Bsp13I | TCCGGA | 1 cut(s) | 957 |
| Bsp1407I | TGTACA | 1 cut(s) | 1449 |
| Bsp19I | CCATGG | 1 cut(s) | 903 |
| BspACI | CCGC | 6 cut(s) | 82, 330, 832, 1628, 1672, 2257 |
| BspANI | GGCC | 5 cut(s) | 902, 1420, 1671, 2244, 2837 |
| BspCNI | CTCAG | 7 cut(s) | 532, 1015, 1072, 1236, 1849, 1882, 2447 |
| BspEI | TCCGGA | 1 cut(s) | 957 |
| BspFNI | CGCG | 1 cut(s) | 1674 |
| BspHI | TCATGA | 1 cut(s) | 781 |
| BspLI | GGNNCC | 3 cut(s) | 1887, 2431, 2449 |
| BspMAI | CTGCAG | 1 cut(s) | 3334 |
| BspMI | ACCTGC | 1 cut(s) | 883 |
| BspOI | GCTAGC | 1 cut(s) | 384 |
| BspPI | GGATC | 6 cut(s) | 286, 534, 1916, 2216, 2442, 2455 |
| BspQI | GCTCTTC | 1 cut(s) | 1008 |
| BspT104I | TTCGAA | 1 cut(s) | 2063 |
| BspT107I | GGYRCC | 1 cut(s) | 1885 |
| BsrBI | CCGCTC | 1 cut(s) | 2257 |
| BsrDI | GCAATG | 2 cut(s) | 1062, 1077 |
| BsrGI | TGTACA | 1 cut(s) | 1449 |
| BsrI | ACTGG | 7 cut(s) | 435, 483, 2088, 2105, 2225, 2245, 2806 |
| BssECI | CCNNGG | 4 cut(s) | 903, 1421, 2181, 2883 |
| BssSI | CACGAG | 1 cut(s) | 2693 |
| BssT1I | CCWWGG | 2 cut(s) | 903, 1421 |
| Bst2BI | CACGAG | 1 cut(s) | 2693 |
| Bst2UI | CCWGG | 4 cut(s) | 1046, 1620, 2183, 2885 |
| Bst4CI | ACNGT | 8 cut(s) | 617, 704, 1782, 2059, 2577, 2688, 3158, 3434 |
| Bst6I | CTCTTC | 8 cut(s) | 253, 440, 449, 1008, 1569, 2124, 2592, 2765 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 1076, 1276, 2624, 2969 |
| BstAUI | TGTACA | 1 cut(s) | 1449 |
| BstBAI | YACGTR | 1 cut(s) | 2609 |
| BstBI | TTCGAA | 1 cut(s) | 2063 |
| BstC8I | GCNNGC | 5 cut(s) | 382, 1020, 2558, 2671, 2807 |
| BstDSI | CCRYGG | 1 cut(s) | 903 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2307 |
| BstF5I | GGATG | 6 cut(s) | 859, 1542, 2558, 2826, 3193, 3321 |
| BstFNI | CGCG | 1 cut(s) | 1674 |
| BstHHI | GCGC | 1 cut(s) | 1676 |
| BstMAI | GTCTC | 5 cut(s) | 15, 121, 1809, 2231, 3474 |
| BstNI | CCWGG | 4 cut(s) | 1046, 1620, 2183, 2885 |
| BstNSI | RCATGY | 2 cut(s) | 1022, 2301 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 474 |
| BstSCI | CCNGG | 4 cut(s) | 1044, 1618, 2181, 2883 |
| BstSFI | CTRYAG | 1 cut(s) | 3330 |
| BstUI | CGCG | 1 cut(s) | 1674 |
| BstV2I | GAAGAC | 1 cut(s) | 3159 |
| BstX2I | RGATCY | 3 cut(s) | 1102, 2221, 2447 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 722 |
| BstYI | RGATCY | 3 cut(s) | 1102, 2221, 2447 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2434 |
| BsuRI | GGCC | 5 cut(s) | 902, 1420, 1671, 2244, 2837 |
| BtgI | CCRYGG | 1 cut(s) | 903 |
| BtrI | CACGTC | 1 cut(s) | 728 |
| BtsCI | GGATG | 6 cut(s) | 859, 1542, 2558, 2826, 3193, 3321 |
| BtsI | GCAGTG | 4 cut(s) | 1668, 2745, 3236, 3327 |
| BveI | ACCTGC | 1 cut(s) | 883 |
| Cac8I | GCNNGC | 5 cut(s) | 382, 1020, 2558, 2671, 2807 |
| CciI | TCATGA | 1 cut(s) | 781 |
| CfoI | GCGC | 1 cut(s) | 1676 |
| Cfr13I | GGNCC | 4 cut(s) | 19, 1418, 1625, 2430 |
| Csp6I | GTAC | 5 cut(s) | 189, 1450, 1783, 2336, 3522 |
| CviQI | GTAC | 5 cut(s) | 189, 1450, 1783, 2336, 3522 |
| DraI | TTTAAA | 3 cut(s) | 351, 405, 1368 |
| EaeI | YGGCCR | 3 cut(s) | 1669, 2242, 2835 |
| Eam1104I | CTCTTC | 8 cut(s) | 253, 440, 449, 1008, 1569, 2124, 2592, 2765 |
| EarI | CTCTTC | 8 cut(s) | 253, 440, 449, 1008, 1569, 2124, 2592, 2765 |
| Ecl136II | GAGCTC | 2 cut(s) | 777, 987 |
| Eco130I | CCWWGG | 2 cut(s) | 903, 1421 |
| Eco24I | GRGCYC | 2 cut(s) | 779, 989 |
| Eco47I | GGWCC | 3 cut(s) | 19, 1625, 2430 |
| Eco53kI | GAGCTC | 2 cut(s) | 777, 987 |
| Eco57I | CTGAAG | 8 cut(s) | 1265, 1539, 1587, 2148, 2690, 3446, 3466, 3579 |
| Eco72I | CACGTG | 1 cut(s) | 2609 |
| Eco81I | CCTNAGG | 1 cut(s) | 2434 |
| EcoICRI | GAGCTC | 2 cut(s) | 777, 987 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2307 |
| EcoO109I | RGGNCCY | 2 cut(s) | 19, 2430 |
| EcoRI | GAATTC | 3 cut(s) | 1856, 2065, 3133 |
| EcoRII | CCWGG | 4 cut(s) | 1044, 1618, 2181, 2883 |
| EcoT14I | CCWWGG | 2 cut(s) | 903, 1421 |
| EcoT22I | ATGCAT | 1 cut(s) | 3057 |
| EcoT38I | GRGCYC | 2 cut(s) | 779, 989 |
| ErhI | CCWWGG | 2 cut(s) | 903, 1421 |
| Esp3I | CGTCTC | 1 cut(s) | 15 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 635, 667, 2107, 2139, 3024, 3056 |
| FaqI | GGGAC | 4 cut(s) | 249, 1349, 1486, 2443 |
| FauI | CCCGC | 1 cut(s) | 323 |
| FbaI | TGATCA | 2 cut(s) | 1003, 1381 |
| FblI | GTMKAC | 1 cut(s) | 304 |
| FokI | GGATG | 6 cut(s) | 846, 1529, 2565, 2833, 3200, 3328 |
| FriOI | GRGCYC | 2 cut(s) | 779, 989 |
| GlaI | GCGC | 1 cut(s) | 1675 |
| GsaI | CCCAGC | 1 cut(s) | 1533 |
| GsuI | CTGGAG | 3 cut(s) | 35, 1986, 2840 |
| HaeIII | GGCC | 5 cut(s) | 902, 1420, 1671, 2244, 2837 |
| HapII | CCGG | 2 cut(s) | 533, 958 |
| HhaI | GCGC | 1 cut(s) | 1676 |
| Hin6I | GCGC | 1 cut(s) | 1674 |
| HinP1I | GCGC | 1 cut(s) | 1674 |
| HincII | GTYRAC | 3 cut(s) | 748, 1146, 3142 |
| HindII | GTYRAC | 3 cut(s) | 748, 1146, 3142 |
| HindIII | AAGCTT | 3 cut(s) | 1433, 1723, 2316 |
| HpaI | GTTAAC | 1 cut(s) | 748 |
| HpaII | CCGG | 2 cut(s) | 533, 958 |
| HphI | GGTGA | 8 cut(s) | 95, 209, 224, 1287, 1802, 1967, 2836, 3137 |
| Hpy166II | GTNNAC | 6 cut(s) | 305, 748, 1146, 1450, 1492, 3142 |
| Hpy8I | GTNNAC | 6 cut(s) | 305, 748, 1146, 1450, 1492, 3142 |
| Hpy99I | CGWCG | 1 cut(s) | 1180 |
| HpyCH4III | ACNGT | 8 cut(s) | 617, 704, 1782, 2059, 2577, 2688, 3158, 3434 |
| HpyCH4IV | ACGT | 4 cut(s) | 727, 1175, 2608, 3441 |
| HpySE526I | ACGT | 4 cut(s) | 727, 1175, 2608, 3441 |
| HspAI | GCGC | 1 cut(s) | 1674 |
| Kpn2I | TCCGGA | 1 cut(s) | 957 |
| Ksp22I | TGATCA | 2 cut(s) | 1003, 1381 |
| KspAI | GTTAAC | 1 cut(s) | 748 |
| LguI | GCTCTTC | 1 cut(s) | 1008 |
| LmnI | GCTCC | 5 cut(s) | 143, 774, 2011, 2020, 2698 |
| MaeII | ACGT | 4 cut(s) | 727, 1175, 2608, 3441 |
| MaeIII | GTNAC | 6 cut(s) | 1293, 1934, 2227, 2305, 3170, 3562 |
| MbiI | CCGCTC | 1 cut(s) | 2257 |
| MfeI | CAATTG | 1 cut(s) | 2925 |
| MflI | RGATCY | 3 cut(s) | 1102, 2221, 2447 |
| MhlI | GDGCHC | 5 cut(s) | 779, 989, 1213, 3441, 3450 |
| MlsI | TGGCCA | 2 cut(s) | 2244, 2837 |
| MluNI | TGGCCA | 2 cut(s) | 2244, 2837 |
| MlyI | GAGTC | 4 cut(s) | 1094, 1301, 1460, 2224 |
| MmeI | TCCRAC | 2 cut(s) | 2357, 2425 |
| Mox20I | TGGCCA | 2 cut(s) | 2244, 2837 |
| Mph1103I | ATGCAT | 1 cut(s) | 3057 |
| MroI | TCCGGA | 1 cut(s) | 957 |
| MscI | TGGCCA | 2 cut(s) | 2244, 2837 |
| MslI | CAYNNNNRTG | 3 cut(s) | 435, 483, 1988 |
| Msp20I | TGGCCA | 2 cut(s) | 2244, 2837 |
| MspI | CCGG | 2 cut(s) | 533, 958 |
| MspR9I | CCNGG | 4 cut(s) | 1046, 1620, 2183, 2885 |
| MunI | CAATTG | 1 cut(s) | 2925 |
| Mva1269I | GAATGC | 2 cut(s) | 1533, 3057 |
| MvaI | CCWGG | 4 cut(s) | 1046, 1620, 2183, 2885 |
| MvnI | CGCG | 1 cut(s) | 1674 |
| NcoI | CCATGG | 1 cut(s) | 903 |
| NheI | GCTAGC | 1 cut(s) | 380 |
| NlaIV | GGNNCC | 3 cut(s) | 1887, 2431, 2449 |
| NmuCI | GTSAC | 5 cut(s) | 1293, 1934, 2227, 2305, 3170 |
| NsiI | ATGCAT | 1 cut(s) | 3057 |
| NspI | RCATGY | 2 cut(s) | 1022, 2301 |
| NspV | TTCGAA | 1 cut(s) | 2063 |
| PaeI | GCATGC | 1 cut(s) | 1022 |
| PagI | TCATGA | 1 cut(s) | 781 |
| PciI | ACATGT | 1 cut(s) | 2297 |
| PciSI | GCTCTTC | 1 cut(s) | 1008 |
| PctI | GAATGC | 2 cut(s) | 1533, 3057 |
| PfeI | GAWTC | 7 cut(s) | 1523, 1829, 1875, 2324, 2368, 2659, 3368 |
| PflFI | GACNNNGTC | 1 cut(s) | 166 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 441, 489 |
| PleI | GAGTC | 4 cut(s) | 1093, 1300, 1460, 2224 |
| PmaCI | CACGTG | 1 cut(s) | 2609 |
| PmlI | CACGTG | 1 cut(s) | 2609 |
| PpsI | GAGTC | 4 cut(s) | 1093, 1300, 1460, 2224 |
| Ppu21I | YACGTR | 1 cut(s) | 2609 |
| PpuMI | RGGWCCY | 2 cut(s) | 19, 2430 |
| PscI | ACATGT | 1 cut(s) | 2297 |
| PshAI | GACNNNNGTC | 1 cut(s) | 474 |
| Psp124BI | GAGCTC | 2 cut(s) | 779, 989 |
| Psp5II | RGGWCCY | 2 cut(s) | 19, 2430 |
| Psp6I | CCWGG | 4 cut(s) | 1044, 1618, 2181, 2883 |
| PspCI | CACGTG | 1 cut(s) | 2609 |
| PspFI | CCCAGC | 1 cut(s) | 1529 |
| PspGI | CCWGG | 4 cut(s) | 1044, 1618, 2181, 2883 |
| PspN4I | GGNNCC | 3 cut(s) | 1887, 2431, 2449 |
| PspPI | GGNCC | 4 cut(s) | 19, 1418, 1625, 2430 |
| PspPPI | RGGWCCY | 2 cut(s) | 19, 2430 |
| PstI | CTGCAG | 1 cut(s) | 3334 |
| PsuI | RGATCY | 3 cut(s) | 1102, 2221, 2447 |
| PsyI | GACNNNGTC | 1 cut(s) | 166 |
| RsaI | GTAC | 5 cut(s) | 190, 1451, 1784, 2337, 3523 |
| RsaNI | GTAC | 5 cut(s) | 189, 1450, 1783, 2336, 3522 |
| RseI | CAYNNNNRTG | 3 cut(s) | 435, 483, 1988 |
| SacI | GAGCTC | 2 cut(s) | 779, 989 |
| SapI | GCTCTTC | 1 cut(s) | 1008 |
| Sau96I | GGNCC | 4 cut(s) | 19, 1418, 1625, 2430 |
| SchI | GAGTC | 4 cut(s) | 1094, 1301, 1460, 2224 |
| ScrFI | CCNGG | 4 cut(s) | 1046, 1620, 2183, 2885 |
| SduI | GDGCHC | 5 cut(s) | 779, 989, 1213, 3441, 3450 |
| SfcI | CTRYAG | 1 cut(s) | 3330 |
| SfuI | TTCGAA | 1 cut(s) | 2063 |
| SinI | GGWCC | 3 cut(s) | 19, 1625, 2430 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 435, 483, 1988 |
| SmlI | CTYRAG | 2 cut(s) | 2846, 2934 |
| SmoI | CTYRAG | 2 cut(s) | 2846, 2934 |
| SphI | GCATGC | 1 cut(s) | 1022 |
| SsiI | CCGC | 6 cut(s) | 82, 330, 832, 1628, 1672, 2257 |
| SspI | AATATT | 3 cut(s) | 623, 2355, 3212 |
| SstI | GAGCTC | 2 cut(s) | 779, 989 |
| StyD4I | CCNGG | 4 cut(s) | 1044, 1618, 2181, 2883 |
| StyI | CCWWGG | 2 cut(s) | 903, 1421 |
| TaaI | ACNGT | 8 cut(s) | 617, 704, 1782, 2059, 2577, 2688, 3158, 3434 |
| TaiI | ACGT | 4 cut(s) | 730, 1178, 2611, 3444 |
| TaqI | TCGA | 3 cut(s) | 68, 1813, 2063 |
| TatI | WGTACW | 3 cut(s) | 1449, 1782, 3521 |
| TauI | GCSGC | 2 cut(s) | 834, 1674 |
| TfiI | GAWTC | 7 cut(s) | 1523, 1829, 1875, 2324, 2368, 2659, 3368 |
| TseFI | GTSAC | 5 cut(s) | 1293, 1934, 2227, 2305, 3170 |
| Tsp45I | GTSAC | 5 cut(s) | 1293, 1934, 2227, 2305, 3170 |
| TspGWI | ACGGA | 1 cut(s) | 1182 |
| Tth111I | GACNNNGTC | 1 cut(s) | 166 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 441, 489 |
| VpaK11BI | GGWCC | 3 cut(s) | 19, 1625, 2430 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2307 |
| XapI | RAATTY | 6 cut(s) | 1856, 1959, 2065, 3133, 3199, 3453 |
| XbaI | TCTAGA | 1 cut(s) | 2233 |
| XceI | RCATGY | 2 cut(s) | 1022, 2301 |
| XmiI | GTMKAC | 1 cut(s) | 304 |
| Zsp2I | ATGCAT | 1 cut(s) | 3057 |