MD11G1087200.v1.1

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0017742
Physical Location & Seq
Forward (+)
7311746 .. 7312012
267 bp
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UTR
Exon/CDS
Intron
MD11G1087200.v1.1.491

Sequence Viewer

Length: 267 bp
ATGGACACTACAGTCAACTGGAAGGAGACCCCCGAAACCCACGTGTTCAAAACGGACATTTTGGGGCTGAAGAATGATGAGGTGAAGGTGGAGGTGGAAGACAACAAGGTGCTTCAGATCAGCGAAGAGAAGAATGTGGAGAAGGAGGACAAACACAACAAGTGGCATAGAGTGGTAAGGAGCAGAGGTAAGTTCTTGAAAGATTTCAGCTTCCGGAGAATGCAAAGGTCGATCAGATTAAGGCTGCCATGGAGAATGGAGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

89

Amino Acids

10.81

Weight (kDa)

9.57

Isoelectric Point (pI)

48.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP20 PF00011 7 - 70 6e-11 Hsp20/alpha crystallin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017742)

Species Orthologous Gene IDs
malus_domestica MD11G1087200.v1.1 MD11G1089400.v1.1
rosa_chinensis RchiOBHm_Chr6g0273051
rosa_laevigata RLG00000016766
rosa_multiflora Rmu_co8398661.1_g000001 Rmu_sc0000239.1_g000121
rosa_roxburghii Rroxscaffold_7G00195690
rosa_rugosa Rorug03G0091000 Rorug06G0072600
rosa_samantha Rh6AG188200 Rh6BG191600 Rh6DG182100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 11
AccIII TCCGGA 1 cut(s) 213
AcuI CTGAAG 2 cut(s) 89, 98
AcvI CACGTG 1 cut(s) 43
AflIII ACRYGT 1 cut(s) 42
AgsI TTSAA 2 cut(s) 49, 199
AluBI AGCT 1 cut(s) 210
AluI AGCT 1 cut(s) 210
Alw26I GTCTC 1 cut(s) 20
Aor13HI TCCGGA 1 cut(s) 213
ApeKI GCWGC 1 cut(s) 244
Asp700I GAANNNNTTC 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 94
BbrPI CACGTG 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 105
BbvI GCAGC 1 cut(s) 231
BcoDI GTCTC 1 cut(s) 20
BfmI CTRYAG 1 cut(s) 9
BisI GCNGC 1 cut(s) 245
BlsI GCNGC 1 cut(s) 246
BpiI GAAGAC 1 cut(s) 105
BsaAI YACGTR 1 cut(s) 43
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 248
BsaWI WCCGGW 1 cut(s) 213
BsaXI ACNNNNNCTCC 2 cut(s) 172, 202
Bse1I ACTGG 1 cut(s) 23
BseAI TCCGGA 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 248
BseNI ACTGG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 231
BsiSI CCGG 1 cut(s) 214
BsmAI GTCTC 1 cut(s) 20
BsmI GAATGC 1 cut(s) 225
Bso31I GGTCTC 1 cut(s) 20
Bsp13I TCCGGA 1 cut(s) 213
Bsp143I GATC 2 cut(s) 117, 231
Bsp19I CCATGG 1 cut(s) 248
BspEI TCCGGA 1 cut(s) 213
BspTNI GGTCTC 1 cut(s) 20
BsrI ACTGG 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 248
BssMI GATC 2 cut(s) 117, 231
BssT1I CCWWGG 1 cut(s) 248
Bst4CI ACNGT 1 cut(s) 13
Bst6I CTCTTC 1 cut(s) 120
BstBAI YACGTR 1 cut(s) 43
BstDSI CCRYGG 1 cut(s) 248
BstKTI GATC 2 cut(s) 120, 234
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 2 cut(s) 117, 231
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 231
BstV2I GAAGAC 1 cut(s) 105
BtgI CCRYGG 1 cut(s) 248
CviAII CATG 1 cut(s) 249
CviJI RGCY 3 cut(s) 67, 210, 244
CviKI_1 RGCY 3 cut(s) 67, 210, 244
DpnI GATC 2 cut(s) 119, 233
DpnII GATC 2 cut(s) 117, 231
DrdI GACNNNNNNGTC 1 cut(s) 11
DseDI GACNNNNNNGTC 1 cut(s) 11
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 248
Eco31I GGTCTC 1 cut(s) 20
Eco57I CTGAAG 2 cut(s) 89, 98
Eco72I CACGTG 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 248
ErhI CCWWGG 1 cut(s) 248
FaeI CATG 1 cut(s) 252
FaiI YATR 2 cut(s) 168, 250
FatI CATG 1 cut(s) 248
Fnu4HI GCNGC 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 245
GluI GCNGC 1 cut(s) 245
HapII CCGG 1 cut(s) 214
Hin1II CATG 1 cut(s) 252
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HpaII CCGG 1 cut(s) 214
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 3 cut(s) 117, 236, 266
Hpy188III TCNNGA 2 cut(s) 196, 214
Hpy8I GTNNAC 1 cut(s) 16
HpyAV CCTTC 3 cut(s) 16, 79, 136
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 1 cut(s) 223
HpySE526I ACGT 1 cut(s) 42
Hsp92II CATG 1 cut(s) 252
Kpn2I TCCGGA 1 cut(s) 213
Kzo9I GATC 2 cut(s) 117, 231
LmnI GCTCC 1 cut(s) 180
LpnPI CCDG 2 cut(s) 4, 227
Lsp1109I GCAGC 1 cut(s) 231
MaeII ACGT 1 cut(s) 42
MalI GATC 2 cut(s) 119, 233
MboI GATC 2 cut(s) 117, 231
MboII GAAGA 4 cut(s) 82, 110, 137, 142
MnlI CCTC 4 cut(s) 73, 85, 139, 179
MroI TCCGGA 1 cut(s) 213
MroXI GAANNNNTTC 1 cut(s) 203
MseI TTAA 1 cut(s) 239
MspI CCGG 1 cut(s) 214
Mva1269I GAATGC 1 cut(s) 225
NcoI CCATGG 1 cut(s) 248
NdeII GATC 2 cut(s) 117, 231
NlaIII CATG 1 cut(s) 252
PctI GAATGC 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 203
PkrI GCNGC 1 cut(s) 246
PmaCI CACGTG 1 cut(s) 43
PmlI CACGTG 1 cut(s) 43
Ppu21I YACGTR 1 cut(s) 43
PspCI CACGTG 1 cut(s) 43
SaqAI TTAA 1 cut(s) 239
SatI GCNGC 1 cut(s) 245
Sau3AI GATC 2 cut(s) 117, 231
SetI ASST 8 cut(s) 45, 84, 90, 96, 111, 190, 212, 230
SfcI CTRYAG 1 cut(s) 9
SgeI CNNG 9 cut(s) 31, 44, 53, 55, 118, 172, 208, 226, 261
StyI CCWWGG 1 cut(s) 248
TaaI ACNGT 1 cut(s) 13
TaiI ACGT 1 cut(s) 45
TaqI TCGA 1 cut(s) 230
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TseI GCWGC 1 cut(s) 244
TspGWI ACGGA 1 cut(s) 68
XmnI GAANNNNTTC 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.