Rh6BG191600

response to heat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0017742
Physical Location & Seq
Reverse (-)
35722664 .. 35732420
9757 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG191600.1

Sequence Viewer

Length: 306 bp
ATGCCTCGATCTCTTGGACCCATTCAAATATTTCCAATTCTCTTCCTCATCGCTCTCCACATTCGAGAAAACTCAGCTTTCATGTCACCAGGATCGACTGGAAGGAGACCCCAAAAGGCAAAAGCCCATGTGTTCAAGGTTGATATTTCGGGGCCGAAGAAAGAAAAGGTCAAGGTTGAGATTGAAGATGACAGGGTGCTGCAGATCAGCAGAGAAAGGAAGATAGAGGAGGACAAGAACGGCAAGTGGCATCAGATCGAGAGAAGTAGCGGCAAGTTCTCGAGAAGGTTCGAATGCAAACGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

101

Amino Acids

11.77

Weight (kDa)

10.28

Isoelectric Point (pI)

82.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP20 PF00011 39 - 98 1.5e-10 Hsp20/alpha crystallin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017742)

Species Orthologous Gene IDs
malus_domestica MD11G1087200.v1.1 MD11G1089400.v1.1
rosa_chinensis RchiOBHm_Chr6g0273051
rosa_laevigata RLG00000016766
rosa_multiflora Rmu_co8398661.1_g000001 Rmu_sc0000239.1_g000121
rosa_roxburghii Rroxscaffold_7G00195690
rosa_rugosa Rorug03G0091000 Rorug06G0072600
rosa_samantha Rh6AG188200 Rh6BG191600 Rh6DG182100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 270
AclI AACGTT 1 cut(s) 301
AclWI GGATC 1 cut(s) 100
AgsI TTSAA 3 cut(s) 26, 136, 185
AjnI CCWGG 1 cut(s) 88
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
Alw26I GTCTC 1 cut(s) 100
AlwI GGATC 1 cut(s) 100
Ama87I CYCGRG 1 cut(s) 280
AoxI GGCC 1 cut(s) 152
ApeKI GCWGC 1 cut(s) 199
AspS9I GGNCC 2 cut(s) 17, 152
AsuHPI GGTGA 1 cut(s) 78
AsuII TTCGAA 1 cut(s) 291
AvaI CYCGRG 1 cut(s) 280
AvaII GGWCC 1 cut(s) 17
BbvI GCAGC 1 cut(s) 186
BceAI ACGGC 1 cut(s) 256
BciT130I CCWGG 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 100
BfmI CTRYAG 1 cut(s) 200
BisI GCNGC 2 cut(s) 200, 271
BlsI GCNGC 2 cut(s) 201, 272
Bme1390I CCNGG 1 cut(s) 90
Bme18I GGWCC 1 cut(s) 17
BmeT110I CYCGRG 1 cut(s) 280
BmgT120I GGNCC 2 cut(s) 17, 152
BmiI GGNNCC 2 cut(s) 19, 153
BmrFI CCNGG 1 cut(s) 90
BmsI GCATC 1 cut(s) 259
Bpu14I TTCGAA 1 cut(s) 291
BsaI GGTCTC 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 103
BseBI CCWGG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 1 cut(s) 103
BseRI GAGGAG 1 cut(s) 242
BseXI GCAGC 1 cut(s) 186
BshFI GGCC 1 cut(s) 154
BsiHKCI CYCGRG 1 cut(s) 280
BsmAI GTCTC 1 cut(s) 100
BsmI GAATGC 1 cut(s) 299
BsnI GGCC 1 cut(s) 154
Bso31I GGTCTC 1 cut(s) 100
BsoBI CYCGRG 1 cut(s) 280
Bsp119I TTCGAA 1 cut(s) 291
Bsp143I GATC 4 cut(s) 8, 92, 204, 255
BspACI CCGC 1 cut(s) 270
BspANI GGCC 1 cut(s) 154
BspCNI CTCAG 1 cut(s) 86
BspLI GGNNCC 2 cut(s) 19, 153
BspMAI CTGCAG 1 cut(s) 204
BspPI GGATC 1 cut(s) 100
BspT104I TTCGAA 1 cut(s) 291
BspTNI GGTCTC 1 cut(s) 100
BsrI ACTGG 1 cut(s) 103
BssMI GATC 4 cut(s) 8, 92, 204, 255
Bst2UI CCWGG 1 cut(s) 90
Bst6I CTCTTC 1 cut(s) 47
BstBI TTCGAA 1 cut(s) 291
BstDEI CTNAG 1 cut(s) 73
BstKTI GATC 4 cut(s) 11, 95, 207, 258
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 4 cut(s) 8, 92, 204, 255
BstNI CCWGG 1 cut(s) 90
BstSCI CCNGG 1 cut(s) 88
BstSFI CTRYAG 1 cut(s) 200
BstV1I GCAGC 1 cut(s) 186
BsuRI GGCC 1 cut(s) 154
BtgZI GCGATG 1 cut(s) 34
Cfr13I GGNCC 2 cut(s) 17, 152
CviAII CATG 2 cut(s) 82, 128
CviJI RGCY 3 cut(s) 77, 125, 154
CviKI_1 RGCY 3 cut(s) 77, 125, 154
DdeI CTNAG 1 cut(s) 73
DpnI GATC 4 cut(s) 10, 94, 206, 257
DpnII GATC 4 cut(s) 8, 92, 204, 255
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco31I GGTCTC 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 17
Eco88I CYCGRG 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 88
FaeI CATG 2 cut(s) 85, 131
FaiI YATR 2 cut(s) 83, 129
FatI CATG 2 cut(s) 81, 127
Fnu4HI GCNGC 2 cut(s) 200, 271
Fsp4HI GCNGC 2 cut(s) 200, 271
GluI GCNGC 2 cut(s) 200, 271
HaeIII GGCC 1 cut(s) 154
Hin1II CATG 2 cut(s) 85, 131
HphI GGTGA 1 cut(s) 78
Hpy188I TCNGA 1 cut(s) 255
Hpy188III TCNNGA 4 cut(s) 65, 259, 280, 282
HpyAV CCTTC 2 cut(s) 96, 279
HpyCH4IV ACGT 1 cut(s) 301
HpyCH4V TGCA 2 cut(s) 202, 297
HpyF3I CTNAG 1 cut(s) 73
HpySE526I ACGT 1 cut(s) 301
Hsp92II CATG 2 cut(s) 85, 131
Kzo9I GATC 4 cut(s) 8, 92, 204, 255
LpnPI CCDG 4 cut(s) 75, 84, 102, 178
Lsp1109I GCAGC 1 cut(s) 186
LweI GCATC 1 cut(s) 259
MaeII ACGT 1 cut(s) 301
MaeIII GTNAC 1 cut(s) 84
MalI GATC 4 cut(s) 10, 94, 206, 257
MboI GATC 4 cut(s) 8, 92, 204, 255
MboII GAAGA 4 cut(s) 34, 169, 197, 232
MluCI AATT 1 cut(s) 36
MnlI CCTC 4 cut(s) 15, 56, 220, 223
MseI TTAA 1 cut(s) 304
MspR9I CCNGG 1 cut(s) 90
Mva1269I GAATGC 1 cut(s) 299
MvaI CCWGG 1 cut(s) 90
NdeII GATC 4 cut(s) 8, 92, 204, 255
NlaIII CATG 2 cut(s) 85, 131
NlaIV GGNNCC 2 cut(s) 19, 153
NmuCI GTSAC 1 cut(s) 84
NspV TTCGAA 1 cut(s) 291
PaeR7I CTCGAG 1 cut(s) 280
PctI GAATGC 1 cut(s) 299
PkrI GCNGC 2 cut(s) 201, 272
Psp1406I AACGTT 1 cut(s) 301
Psp6I CCWGG 1 cut(s) 88
PspGI CCWGG 1 cut(s) 88
PspN4I GGNNCC 2 cut(s) 19, 153
PspPI GGNCC 2 cut(s) 17, 152
PstI CTGCAG 1 cut(s) 204
SaqAI TTAA 1 cut(s) 304
SatI GCNGC 2 cut(s) 200, 271
Sau3AI GATC 4 cut(s) 8, 92, 204, 255
Sau96I GGNCC 2 cut(s) 17, 152
ScrFI CCNGG 1 cut(s) 90
SetI ASST 6 cut(s) 79, 141, 171, 177, 290, 304
SfaNI GCATC 1 cut(s) 259
SfcI CTRYAG 1 cut(s) 200
Sfr274I CTCGAG 1 cut(s) 280
SfuI TTCGAA 1 cut(s) 291
SinI GGWCC 1 cut(s) 17
SlaI CTCGAG 1 cut(s) 280
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
Sse9I AATT 1 cut(s) 36
SsiI CCGC 1 cut(s) 270
SspI AATATT 1 cut(s) 30
StyD4I CCNGG 1 cut(s) 88
TaiI ACGT 1 cut(s) 304
TaqI TCGA 6 cut(s) 7, 64, 95, 258, 281, 291
TasI AATT 1 cut(s) 36
TauI GCSGC 1 cut(s) 273
Tru1I TTAA 1 cut(s) 304
Tru9I TTAA 1 cut(s) 304
TseFI GTSAC 1 cut(s) 84
TseI GCWGC 1 cut(s) 199
Tsp45I GTSAC 1 cut(s) 84
TspDTI ATGAA 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 17
XhoI CTCGAG 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.