Rmu_co8398661.1_g000001

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8398661.1
OG0017742
Physical Location & Seq
Reverse (-)
2 .. 278
277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8398661.1_g000001.1.cds

Sequence Viewer

Length: 277 bp
atgtcgcttatccccaatttccgacgtagcacggtagcagcaacatctttgacccccttttccctcgatctctgggaccccttcaaggattttccattcccttcttcatcgctctctctttttcccgaatttcttcgcgaaaattcggcttttgtcaacactaggatcgactggaaggagaccccggaagcccatgttttcaaggctgacattcccgggctgacgaaagaagagatcaaggttgaggtagaagacgacagggtgcttcagatcagcg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

92

Amino Acids

10.56

Weight (kDa)

4.73

Isoelectric Point (pI)

52.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017742)

Species Orthologous Gene IDs
malus_domestica MD11G1087200.v1.1 MD11G1089400.v1.1
rosa_chinensis RchiOBHm_Chr6g0273051
rosa_laevigata RLG00000016766
rosa_multiflora Rmu_co8398661.1_g000001 Rmu_sc0000239.1_g000121
rosa_roxburghii Rroxscaffold_7G00195690
rosa_rugosa Rorug03G0091000 Rorug06G0072600
rosa_samantha Rh6AG188200 Rh6BG191600 Rh6DG182100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 138
AclWI GGATC 1 cut(s) 173
AcsI RAATTY 2 cut(s) 128, 142
AcuI CTGAAG 1 cut(s) 251
AfiI CCNNNNNNNGG 1 cut(s) 85
AgsI TTSAA 2 cut(s) 85, 202
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 1 cut(s) 173
Ama87I CYCGRG 1 cut(s) 215
ApeKI GCWGC 1 cut(s) 38
ApoI RAATTY 2 cut(s) 128, 142
Asp700I GAANNNNTTC 1 cut(s) 132
AspS9I GGNCC 1 cut(s) 76
AsuC2I CCSGG 3 cut(s) 185, 216, 217
AvaI CYCGRG 1 cut(s) 215
AvaII GGWCC 1 cut(s) 76
BbsI GAAGAC 1 cut(s) 258
BbvI GCAGC 1 cut(s) 50
BcnI CCSGG 3 cut(s) 185, 216, 217
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 1 cut(s) 162
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
Bme1390I CCNGG 3 cut(s) 185, 216, 217
Bme18I GGWCC 1 cut(s) 76
BmeT110I CYCGRG 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 76
BmiI GGNNCC 2 cut(s) 77, 78
BmrFI CCNGG 3 cut(s) 185, 216, 217
BpiI GAAGAC 1 cut(s) 258
BpuMI CCSGG 3 cut(s) 185, 216, 217
BsaI GGTCTC 1 cut(s) 173
BsaJI CCNNGG 2 cut(s) 183, 215
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse1I ACTGG 1 cut(s) 176
BseDI CCNNGG 2 cut(s) 183, 215
BseLI CCNNNNNNNGG 1 cut(s) 85
BseNI ACTGG 1 cut(s) 176
BseXI GCAGC 1 cut(s) 50
Bsh1236I CGCG 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 2 cut(s) 185, 216
BslFI GGGAC 1 cut(s) 89
BslI CCNNNNNNNGG 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 89
Bso31I GGTCTC 1 cut(s) 173
BsoBI CYCGRG 1 cut(s) 215
Bsp143I GATC 4 cut(s) 67, 165, 234, 270
Bsp68I TCGCGA 1 cut(s) 138
BspFNI CGCG 1 cut(s) 138
BspLI GGNNCC 2 cut(s) 77, 78
BspPI GGATC 1 cut(s) 173
BspTNI GGTCTC 1 cut(s) 173
BsrI ACTGG 1 cut(s) 176
BssECI CCNNGG 2 cut(s) 183, 215
BssMI GATC 4 cut(s) 67, 165, 234, 270
Bst4CI ACNGT 1 cut(s) 34
Bst6I CTCTTC 1 cut(s) 225
BstFNI CGCG 1 cut(s) 138
BstKTI GATC 4 cut(s) 70, 168, 237, 273
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 4 cut(s) 67, 165, 234, 270
BstSCI CCNGG 3 cut(s) 183, 214, 215
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 1 cut(s) 50
BstV2I GAAGAC 1 cut(s) 258
BtgZI GCGATG 1 cut(s) 93
BtuMI TCGCGA 1 cut(s) 138
Cfr13I GGNCC 1 cut(s) 76
Cfr9I CCCGGG 1 cut(s) 215
CviAII CATG 1 cut(s) 194
CviJI RGCY 4 cut(s) 149, 191, 206, 220
CviKI_1 RGCY 4 cut(s) 149, 191, 206, 220
DpnI GATC 4 cut(s) 69, 167, 236, 272
DpnII GATC 4 cut(s) 67, 165, 234, 270
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Eco31I GGTCTC 1 cut(s) 173
Eco47I GGWCC 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 251
Eco88I CYCGRG 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 76
FaeI CATG 1 cut(s) 197
FaiI YATR 1 cut(s) 195
FaqI GGGAC 1 cut(s) 89
FatI CATG 1 cut(s) 193
Fnu4HI GCNGC 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 1 cut(s) 162
GluI GCNGC 1 cut(s) 39
HapII CCGG 2 cut(s) 185, 216
Hin1II CATG 1 cut(s) 197
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HpaII CCGG 2 cut(s) 185, 216
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 2 cut(s) 23, 270
Hpy188III TCNNGA 2 cut(s) 125, 137
Hpy8I GTNNAC 1 cut(s) 157
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 3 cut(s) 91, 111, 169
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4IV ACGT 1 cut(s) 25
HpySE526I ACGT 1 cut(s) 25
Hsp92II CATG 1 cut(s) 197
KflI GGGWCCC 1 cut(s) 76
Kzo9I GATC 4 cut(s) 67, 165, 234, 270
LpnPI CCDG 5 cut(s) 58, 157, 198, 229, 244
Lsp1109I GCAGC 1 cut(s) 50
MaeI CTAG 1 cut(s) 162
MaeII ACGT 1 cut(s) 25
MalI GATC 4 cut(s) 69, 167, 236, 272
MboI GATC 4 cut(s) 67, 165, 234, 270
MboII GAAGA 4 cut(s) 96, 125, 242, 263
MluCI AATT 3 cut(s) 16, 128, 142
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 2 cut(s) 74, 238
MroXI GAANNNNTTC 1 cut(s) 132
MspI CCGG 2 cut(s) 185, 216
MspR9I CCNGG 3 cut(s) 185, 216, 217
MvnI CGCG 1 cut(s) 138
NciI CCSGG 3 cut(s) 185, 216, 217
NdeII GATC 4 cut(s) 67, 165, 234, 270
NlaIII CATG 1 cut(s) 197
NlaIV GGNNCC 2 cut(s) 77, 78
NruI TCGCGA 1 cut(s) 138
PdmI GAANNNNTTC 1 cut(s) 132
PkrI GCNGC 1 cut(s) 40
PpuMI RGGWCCY 1 cut(s) 76
Psp5II RGGWCCY 1 cut(s) 76
PspN4I GGNNCC 2 cut(s) 77, 78
PspPI GGNCC 1 cut(s) 76
PspPPI RGGWCCY 1 cut(s) 76
RruI TCGCGA 1 cut(s) 138
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 4 cut(s) 67, 165, 234, 270
Sau96I GGNCC 1 cut(s) 76
ScrFI CCNGG 3 cut(s) 185, 216, 217
SetI ASST 3 cut(s) 28, 243, 249
SinI GGWCC 1 cut(s) 76
SmaI CCCGGG 1 cut(s) 217
Sse9I AATT 3 cut(s) 16, 128, 142
SspMI CTAG 1 cut(s) 162
StyD4I CCNGG 3 cut(s) 183, 214, 215
TaaI ACNGT 1 cut(s) 34
TaiI ACGT 1 cut(s) 28
TaqI TCGA 2 cut(s) 66, 168
TasI AATT 3 cut(s) 16, 128, 142
TseI GCWGC 1 cut(s) 38
TspDTI ATGAA 1 cut(s) 96
TspMI CCCGGG 1 cut(s) 215
VpaK11BI GGWCC 1 cut(s) 76
XapI RAATTY 2 cut(s) 128, 142
XmaI CCCGGG 1 cut(s) 215
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.