MD11G1089400.v1.1

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0017742
Physical Location & Seq
Forward (+)
7423807 .. 7423977
171 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1089400.v1.1.491

Sequence Viewer

Length: 171 bp
ATGAACACTACAGTCGACTGGAAGGAGACCCCCGAAACCCACGTGTTCAAGACGGACATTTTGGGGCTGAAGAAGGATGAGGTGAAGGTGGAGGTGGAAGACAACAGGGTGCTTCAGATCAGCGAAGAGAATAACGTGGAGAAGGAGGACAAAAAACGACAAGTGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

57

Amino Acids

6.61

Weight (kDa)

4.89

Isoelectric Point (pI)

32.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP20 PF00011 6 - 51 2.3e-08 Hsp20/alpha crystallin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017742)

Species Orthologous Gene IDs
malus_domestica MD11G1087200.v1.1 MD11G1089400.v1.1
rosa_chinensis RchiOBHm_Chr6g0273051
rosa_laevigata RLG00000016766
rosa_multiflora Rmu_co8398661.1_g000001 Rmu_sc0000239.1_g000121
rosa_roxburghii Rroxscaffold_7G00195690
rosa_rugosa Rorug03G0091000 Rorug06G0072600
rosa_samantha Rh6AG188200 Rh6BG191600 Rh6DG182100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 15
AcuI CTGAAG 2 cut(s) 89, 98
AcvI CACGTG 1 cut(s) 43
AflIII ACRYGT 1 cut(s) 42
AgsI TTSAA 1 cut(s) 49
Alw26I GTCTC 1 cut(s) 20
ArsI GACNNNNNNTTYG 2 cut(s) 43, 75
AsuHPI GGTGA 1 cut(s) 94
BbrPI CACGTG 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 105
BcoDI GTCTC 1 cut(s) 20
BfmI CTRYAG 1 cut(s) 9
BpiI GAAGAC 1 cut(s) 105
BsaAI YACGTR 1 cut(s) 43
BsaI GGTCTC 1 cut(s) 20
Bse1I ACTGG 1 cut(s) 23
BseGI GGATG 1 cut(s) 82
BseNI ACTGG 1 cut(s) 23
BsmAI GTCTC 1 cut(s) 20
Bso31I GGTCTC 1 cut(s) 20
Bsp143I GATC 1 cut(s) 117
BspTNI GGTCTC 1 cut(s) 20
BsrI ACTGG 1 cut(s) 23
BssMI GATC 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 13
Bst6I CTCTTC 1 cut(s) 120
BstBAI YACGTR 1 cut(s) 43
BstF5I GGATG 1 cut(s) 82
BstKTI GATC 1 cut(s) 120
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 1 cut(s) 117
BstSFI CTRYAG 1 cut(s) 9
BstV2I GAAGAC 1 cut(s) 105
BtsCI GGATG 1 cut(s) 82
CviJI RGCY 1 cut(s) 67
CviKI_1 RGCY 1 cut(s) 67
DpnI GATC 1 cut(s) 119
DpnII GATC 1 cut(s) 117
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco31I GGTCTC 1 cut(s) 20
Eco57I CTGAAG 2 cut(s) 89, 98
Eco72I CACGTG 1 cut(s) 43
FaiI YATR 1 cut(s) 169
FblI GTMKAC 1 cut(s) 15
FokI GGATG 1 cut(s) 89
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 1 cut(s) 49
Hpy8I GTNNAC 1 cut(s) 16
HpyAV CCTTC 4 cut(s) 16, 67, 79, 136
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4IV ACGT 2 cut(s) 42, 135
HpySE526I ACGT 2 cut(s) 42, 135
Kzo9I GATC 1 cut(s) 117
LpnPI CCDG 2 cut(s) 4, 91
MaeII ACGT 2 cut(s) 42, 135
MaeIII GTNAC 1 cut(s) 163
MalI GATC 1 cut(s) 119
MboI GATC 1 cut(s) 117
MboII GAAGA 3 cut(s) 82, 110, 137
MnlI CCTC 3 cut(s) 73, 85, 139
NdeII GATC 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 163
PmaCI CACGTG 1 cut(s) 43
PmlI CACGTG 1 cut(s) 43
Ppu21I YACGTR 1 cut(s) 43
PspCI CACGTG 1 cut(s) 43
SalI GTCGAC 1 cut(s) 14
Sau3AI GATC 1 cut(s) 117
SetI ASST 5 cut(s) 45, 84, 90, 96, 138
SfcI CTRYAG 1 cut(s) 9
SgeI CNNG 7 cut(s) 31, 44, 53, 55, 61, 118, 148
TaaI ACNGT 1 cut(s) 13
TaiI ACGT 2 cut(s) 45, 138
TaqI TCGA 1 cut(s) 15
TseFI GTSAC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 68
XmiI GTMKAC 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.