RLG00000016766

response to heat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017742
Physical Location & Seq
Forward (+)
9854506 .. 9854829
324 bp
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UTR
Exon/CDS
Intron
RLM00000016766

Sequence Viewer

Length: 324 bp
ATGTCGCTCATTCCCAATCTTCGACGAAACATTATCTTCAGAGATTTCCAATTCCCTTCCTCATCGCTCTCCACATTCGAGAAAACTCAGCTTTCATCGTCACCAGGATCGACTAGAAGGAGACCCCAGAAGGCAGAAGCCCATGTGTTCAAGGTTGATATTTCGGGGCCAAAGAAAGAAGAGGTCAAGGTTGAGATTGAAGATGACAGGGTGCTGCAGATCAGCAGAGAAAGGAAGATAGAGAAGGAGGACAAGAACGGCAAGTGGCACTGGATCGAGAGAAGCAGTGACAAGTTCTCGAGGAGGCCCGAATACGAAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

108

Amino Acids

12.66

Weight (kDa)

9.69

Isoelectric Point (pI)

87.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP20 PF00011 44 - 102 1.5e-10 Hsp20/alpha crystallin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017742)

Species Orthologous Gene IDs
malus_domestica MD11G1087200.v1.1 MD11G1089400.v1.1
rosa_chinensis RchiOBHm_Chr6g0273051
rosa_laevigata RLG00000016766
rosa_multiflora Rmu_co8398661.1_g000001 Rmu_sc0000239.1_g000121
rosa_roxburghii Rroxscaffold_7G00195690
rosa_rugosa Rorug03G0091000 Rorug06G0072600
rosa_samantha Rh6AG188200 Rh6BG191600 Rh6DG182100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 115, 281
AcuI CTGAAG 1 cut(s) 22
AgsI TTSAA 2 cut(s) 151, 200
AjnI CCWGG 1 cut(s) 103
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
Alw26I GTCTC 1 cut(s) 115
AlwI GGATC 2 cut(s) 115, 281
Ama87I CYCGRG 1 cut(s) 298
AoxI GGCC 2 cut(s) 167, 305
ApeKI GCWGC 1 cut(s) 214
AspS9I GGNCC 2 cut(s) 167, 306
AsuHPI GGTGA 1 cut(s) 93
AvaI CYCGRG 1 cut(s) 298
BbvI GCAGC 1 cut(s) 201
BceAI ACGGC 1 cut(s) 274
BciT130I CCWGG 1 cut(s) 105
BcoDI GTCTC 1 cut(s) 115
BfaI CTAG 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 215
BisI GCNGC 1 cut(s) 215
BlsI GCNGC 1 cut(s) 216
Bme1390I CCNGG 1 cut(s) 105
BmeT110I CYCGRG 1 cut(s) 298
BmgT120I GGNCC 2 cut(s) 167, 306
BmiI GGNNCC 1 cut(s) 168
BmrFI CCNGG 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 115
Bse1I ACTGG 1 cut(s) 275
BseBI CCWGG 1 cut(s) 105
BseMII CTCAG 1 cut(s) 101
BseNI ACTGG 1 cut(s) 275
BseRI GAGGAG 1 cut(s) 316
BseXI GCAGC 1 cut(s) 201
BshFI GGCC 2 cut(s) 169, 307
BsiHKCI CYCGRG 1 cut(s) 298
BsmAI GTCTC 1 cut(s) 115
BsnI GGCC 2 cut(s) 169, 307
Bso31I GGTCTC 1 cut(s) 115
BsoBI CYCGRG 1 cut(s) 298
Bsp143I GATC 3 cut(s) 107, 219, 273
BspANI GGCC 2 cut(s) 169, 307
BspCNI CTCAG 1 cut(s) 100
BspLI GGNNCC 1 cut(s) 168
BspMAI CTGCAG 1 cut(s) 219
BspPI GGATC 2 cut(s) 115, 281
BspTNI GGTCTC 1 cut(s) 115
BsrI ACTGG 1 cut(s) 275
BssMI GATC 3 cut(s) 107, 219, 273
Bst2UI CCWGG 1 cut(s) 105
Bst6I CTCTTC 1 cut(s) 174
BstDEI CTNAG 1 cut(s) 87
BstKTI GATC 3 cut(s) 110, 222, 276
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 3 cut(s) 107, 219, 273
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
BstSFI CTRYAG 1 cut(s) 215
BstV1I GCAGC 1 cut(s) 201
BsuRI GGCC 2 cut(s) 169, 307
BtgZI GCGATG 1 cut(s) 48
BtsI GCAGTG 1 cut(s) 292
BtsIMutI CAGTG 2 cut(s) 268, 292
Cfr13I GGNCC 2 cut(s) 167, 306
CviAII CATG 1 cut(s) 143
CviJI RGCY 4 cut(s) 91, 140, 169, 307
CviKI_1 RGCY 4 cut(s) 91, 140, 169, 307
DdeI CTNAG 1 cut(s) 87
DpnI GATC 3 cut(s) 109, 221, 275
DpnII GATC 3 cut(s) 107, 219, 273
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
Eco31I GGTCTC 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 22
Eco88I CYCGRG 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 103
FaeI CATG 1 cut(s) 146
FaiI YATR 1 cut(s) 144
FatI CATG 1 cut(s) 142
Fnu4HI GCNGC 1 cut(s) 215
Fsp4HI GCNGC 1 cut(s) 215
FspBI CTAG 1 cut(s) 114
GluI GCNGC 1 cut(s) 215
HaeIII GGCC 2 cut(s) 169, 307
Hin1II CATG 1 cut(s) 146
HphI GGTGA 1 cut(s) 93
Hpy188I TCNGA 1 cut(s) 41
Hpy188III TCNNGA 3 cut(s) 79, 277, 298
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 5 cut(s) 66, 111, 124, 238, 311
HpyCH4V TGCA 1 cut(s) 217
HpyF3I CTNAG 1 cut(s) 87
Hsp92II CATG 1 cut(s) 146
Kzo9I GATC 3 cut(s) 107, 219, 273
LpnPI CCDG 5 cut(s) 90, 117, 140, 193, 256
Lsp1109I GCAGC 1 cut(s) 201
MaeI CTAG 1 cut(s) 114
MaeIII GTNAC 2 cut(s) 99, 287
MalI GATC 3 cut(s) 109, 221, 275
MboI GATC 3 cut(s) 107, 219, 273
MboII GAAGA 5 cut(s) 11, 28, 191, 212, 247
MluCI AATT 1 cut(s) 50
MnlI CCTC 5 cut(s) 70, 175, 241, 294, 297
MseI TTAA 1 cut(s) 322
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
NdeII GATC 3 cut(s) 107, 219, 273
NlaIII CATG 1 cut(s) 146
NlaIV GGNNCC 1 cut(s) 168
NmuCI GTSAC 2 cut(s) 99, 287
PaeR7I CTCGAG 1 cut(s) 298
PkrI GCNGC 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 168
PspPI GGNCC 2 cut(s) 167, 306
PstI CTGCAG 1 cut(s) 219
SaqAI TTAA 1 cut(s) 322
SatI GCNGC 1 cut(s) 215
Sau3AI GATC 3 cut(s) 107, 219, 273
Sau96I GGNCC 2 cut(s) 167, 306
ScrFI CCNGG 1 cut(s) 105
SetI ASST 5 cut(s) 93, 156, 186, 192, 322
SfcI CTRYAG 1 cut(s) 215
Sfr274I CTCGAG 1 cut(s) 298
SlaI CTCGAG 1 cut(s) 298
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
Sse9I AATT 1 cut(s) 50
SspMI CTAG 1 cut(s) 114
StyD4I CCNGG 1 cut(s) 103
TaqI TCGA 5 cut(s) 22, 78, 110, 276, 299
TasI AATT 1 cut(s) 50
Tru1I TTAA 1 cut(s) 322
Tru9I TTAA 1 cut(s) 322
TscAI CASTG 2 cut(s) 275, 292
TseFI GTSAC 2 cut(s) 99, 287
TseI GCWGC 1 cut(s) 214
Tsp45I GTSAC 2 cut(s) 99, 287
TspDTI ATGAA 1 cut(s) 84
TspRI CASTG 2 cut(s) 275, 292
XhoI CTCGAG 1 cut(s) 298
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.