MD11G1192200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0011266
Physical Location & Seq
Reverse (-)
27315388 .. 27316774
1387 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1192200.v1.1.491

Sequence Viewer

Length: 525 bp
ATGCTTCCTCTGTATTCTCCTTCACTTCACAGTAAACCACCATTATCGCTGCAACCATTTTCTCTCACAAGTTATAAGCTTAAAACACGCATTTCTGAATTGCTAGATTCTGGCGACGGCGTTTGCAGGAAGAAGAACACAAACCCACTTCGTAATTCTTCTTCTTCATCATCTTCCTGTATTGTTTATGCAGTAGAGAACGAGTCACAGCAATTTGAGGTAGACCCAGATAAGGCCAGAGAAGCCCTTAAAAATCTTGACCAGCAACTTCAATCCAGCTCCCAAACTAAATTCCGCCCTCCAAAGGAAAAGGCACCGGATGTGACTTTTTCAAGAGACCGAACAAAAGATGAACATGTTGAGGAATTTTCAGGATCGTTTTTTGCAATCACGGCTGCTGCAGTCTTTGCTTTTACCGTTTTCTATAATGTGTTATTTTACACTGTTATAAAACCATCTATAGATGGACTTGAGGCAGCTCCATCCACGGTTGTTCAAAGAGAAATCCTAAAGGACCAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.49

Weight (kDa)

6.74

Isoelectric Point (pI)

51.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01870
fragaria_vesca FvH4_3g28750
malus_domestica MD03G1174000.v1.1 MD11G1192200.v1.1
prunus_persica Prupe.4G250100_v2.0.a1
pyrus_communis pycom03g13160 pycom11g16800
rosa_chinensis RchiOBHm_Chr5g0052301
rosa_laevigata RLG00000034827
rosa_multiflora Rmu_sc0021240.1_g000003 Rmu_sc0028377.1_g000002
rosa_roxburghii Rroxscaffold_1G00028130 Rroxscaffold_1G00028140
rosa_rugosa Rorug05G0273000
rosa_samantha Rh5AG345900 Rh5BG356600 Rh5CG381900 Rh5DG371800
rosa_wichuraiana Rw5G032620 Rw5G032660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 75, 449
AccB1I GGYRCC 1 cut(s) 313
AccI GTMKAC 1 cut(s) 222
AciI CCGC 1 cut(s) 295
AclWI GGATC 1 cut(s) 382
AcsI RAATTY 2 cut(s) 290, 365
AfiI CCNNNNNNNGG 2 cut(s) 232, 304
AflIII ACRYGT 1 cut(s) 355
AgsI TTSAA 3 cut(s) 272, 333, 497
AluBI AGCT 3 cut(s) 79, 279, 479
AluI AGCT 3 cut(s) 79, 279, 479
Alw26I GTCTC 1 cut(s) 330
AlwI GGATC 1 cut(s) 382
AoxI GGCC 1 cut(s) 234
ApeKI GCWGC 4 cut(s) 49, 395, 398, 476
ApoI RAATTY 2 cut(s) 290, 365
AspS9I GGNCC 1 cut(s) 514
AvaII GGWCC 1 cut(s) 514
BanI GGYRCC 1 cut(s) 313
BarI GAAGNNNNNNTAC 2 cut(s) 145, 177
BbvI GCAGC 4 cut(s) 36, 382, 385, 488
BccI CCATC 3 cut(s) 458, 463, 490
BceAI ACGGC 2 cut(s) 133, 408
BcoDI GTCTC 1 cut(s) 330
BfaI CTAG 1 cut(s) 104
BfmI CTRYAG 2 cut(s) 399, 459
BisI GCNGC 4 cut(s) 50, 396, 399, 477
BlsI GCNGC 4 cut(s) 51, 397, 400, 478
Bme18I GGWCC 1 cut(s) 514
BmgT120I GGNCC 1 cut(s) 514
BmiI GGNNCC 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 491
BsaI GGTCTC 1 cut(s) 330
BsaJI CCNNGG 1 cut(s) 486
BsaWI WCCGGW 1 cut(s) 316
Bsc4I CCNNNNNNNGG 2 cut(s) 232, 304
Bse1I ACTGG 1 cut(s) 517
BseDI CCNNGG 1 cut(s) 486
BseGI GGATG 2 cut(s) 325, 482
BseLI CCNNNNNNNGG 2 cut(s) 232, 304
BseNI ACTGG 1 cut(s) 517
BseXI GCAGC 4 cut(s) 36, 382, 385, 488
BshFI GGCC 1 cut(s) 236
BshNI GGYRCC 1 cut(s) 313
BsiSI CCGG 1 cut(s) 317
BslI CCNNNNNNNGG 2 cut(s) 232, 304
BsmAI GTCTC 1 cut(s) 330
BsnI GGCC 1 cut(s) 236
Bso31I GGTCTC 1 cut(s) 330
Bsp143I GATC 1 cut(s) 374
BspACI CCGC 1 cut(s) 295
BspANI GGCC 1 cut(s) 236
BspLI GGNNCC 1 cut(s) 315
BspMAI CTGCAG 1 cut(s) 403
BspPI GGATC 1 cut(s) 382
BspT107I GGYRCC 1 cut(s) 313
BspTNI GGTCTC 1 cut(s) 330
BsrI ACTGG 1 cut(s) 517
BssECI CCNNGG 1 cut(s) 486
BssMI GATC 1 cut(s) 374
Bst4CI ACNGT 4 cut(s) 32, 418, 445, 490
BstAPI GCANNNNNTGC 1 cut(s) 407
BstDSI CCRYGG 1 cut(s) 486
BstF5I GGATG 2 cut(s) 325, 482
BstKTI GATC 1 cut(s) 377
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 1 cut(s) 374
BstMWI GCNNNNNNNGC 3 cut(s) 242, 392, 407
BstNSI RCATGY 1 cut(s) 359
BstSFI CTRYAG 2 cut(s) 399, 459
BstV1I GCAGC 4 cut(s) 36, 382, 385, 488
BsuRI GGCC 1 cut(s) 236
BtgI CCRYGG 1 cut(s) 486
BtsCI GGATG 2 cut(s) 325, 482
BtsIMutI CAGTG 1 cut(s) 441
Cfr13I GGNCC 1 cut(s) 514
CviAII CATG 1 cut(s) 356
CviJI RGCY 6 cut(s) 79, 236, 245, 279, 395, 479
CviKI_1 RGCY 6 cut(s) 79, 236, 245, 279, 395, 479
DpnI GATC 1 cut(s) 376
DpnII GATC 1 cut(s) 374
EciI GGCGGA 1 cut(s) 284
Eco31I GGTCTC 1 cut(s) 330
Eco47I GGWCC 1 cut(s) 514
FaeI CATG 1 cut(s) 359
FaiI YATR 6 cut(s) 75, 189, 357, 426, 449, 461
FatI CATG 1 cut(s) 355
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 4 cut(s) 50, 396, 399, 477
FokI GGATG 2 cut(s) 332, 469
Fsp4HI GCNGC 4 cut(s) 50, 396, 399, 477
FspBI CTAG 1 cut(s) 104
GluI GCNGC 4 cut(s) 50, 396, 399, 477
HaeIII GGCC 1 cut(s) 236
HapII CCGG 1 cut(s) 317
Hin1II CATG 1 cut(s) 359
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 2 cut(s) 107, 203
HpaII CCGG 1 cut(s) 317
Hpy166II GTNNAC 2 cut(s) 35, 223
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 3 cut(s) 257, 333, 372
Hpy8I GTNNAC 2 cut(s) 35, 223
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 30
HpyCH4III ACNGT 4 cut(s) 32, 418, 445, 490
HpyCH4V TGCA 5 cut(s) 52, 126, 191, 386, 401
HpyF10VI GCNNNNNNNGC 3 cut(s) 242, 392, 407
Hsp92II CATG 1 cut(s) 359
Kzo9I GATC 1 cut(s) 374
LmnI GCTCC 2 cut(s) 284, 484
LpnPI CCDG 9 cut(s) 96, 112, 190, 240, 250, 275, 289, 330, 357
Lsp1109I GCAGC 4 cut(s) 36, 382, 385, 488
MaeI CTAG 1 cut(s) 104
MaeIII GTNAC 2 cut(s) 204, 322
MalI GATC 1 cut(s) 376
MboI GATC 1 cut(s) 374
MboII GAAGA 6 cut(s) 142, 145, 150, 153, 156, 165
MluCI AATT 5 cut(s) 98, 154, 212, 290, 365
MlyI GAGTC 1 cut(s) 212
MnlI CCTC 5 cut(s) 18, 211, 309, 355, 466
MseI TTAA 2 cut(s) 81, 249
MspI CCGG 1 cut(s) 317
MwoI GCNNNNNNNGC 3 cut(s) 242, 392, 407
NdeII GATC 1 cut(s) 374
NlaIII CATG 1 cut(s) 359
NlaIV GGNNCC 1 cut(s) 315
NmuCI GTSAC 2 cut(s) 204, 322
NspI RCATGY 1 cut(s) 359
PciI ACATGT 1 cut(s) 355
PfeI GAWTC 1 cut(s) 107
PkrI GCNGC 4 cut(s) 51, 397, 400, 478
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PscI ACATGT 1 cut(s) 355
PsiI TTATAA 2 cut(s) 75, 449
PspN4I GGNNCC 1 cut(s) 315
PspPI GGNCC 1 cut(s) 514
PstI CTGCAG 1 cut(s) 403
SaqAI TTAA 2 cut(s) 81, 249
SatI GCNGC 4 cut(s) 50, 396, 399, 477
Sau3AI GATC 1 cut(s) 374
Sau96I GGNCC 1 cut(s) 514
SchI GAGTC 1 cut(s) 212
SetI ASST 4 cut(s) 81, 222, 281, 481
SfcI CTRYAG 2 cut(s) 399, 459
SinI GGWCC 1 cut(s) 514
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
Sse9I AATT 5 cut(s) 98, 154, 212, 290, 365
SsiI CCGC 1 cut(s) 295
SspMI CTAG 1 cut(s) 104
TaaI ACNGT 4 cut(s) 32, 418, 445, 490
TaqII GACCGA 1 cut(s) 354
TasI AATT 5 cut(s) 98, 154, 212, 290, 365
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 2 cut(s) 81, 249
Tru9I TTAA 2 cut(s) 81, 249
TscAI CASTG 1 cut(s) 448
TseFI GTSAC 2 cut(s) 204, 322
TseI GCWGC 4 cut(s) 49, 395, 398, 476
Tsp45I GTSAC 2 cut(s) 204, 322
TspDTI ATGAA 2 cut(s) 156, 366
TspRI CASTG 1 cut(s) 448
VpaK11BI GGWCC 1 cut(s) 514
XapI RAATTY 2 cut(s) 290, 365
XceI RCATGY 1 cut(s) 359
XmiI GTMKAC 1 cut(s) 222
XspI CTAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.