Rroxscaffold_1G00028140

acid phosphatase activity

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
35838342 .. 35838959
618 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00028140.1

Sequence Viewer

Length: 450 bp
ATGCAAACTGTGAAAATTCCTATGTCCATTTGTGACAGCCTTGATAAGTTGAATAGAGATTTTTTATGGGCGGTTTGTGATGGTAAGAAGAAAACTCACCTTGCTAATTGGGAGTTAGTTTGCGTCTCTAAAGAGTTTGGTGGCCTAGGAATTAAATGCACTAAGGATATGAATCAGTCTATGCTTGCTAAGATTGGGTGGAGAATGTTCCAAGGTGATAAGGGTCTGTGGAGTGATGTACTCCATCATAAATATGTCAAGCAGGTCTCTTTTCTCCATCCTCATCATACTAATTTGCAAGCAAAAGTCAAGGATTTCTTGAATGAGCATGGCTGGAACATGGATTTATTAAGATCGGTGCCTCCTGATGATCTGATTAGCCAAATTGTGAAGATCCCTGCTGGGTTTGCTGGTTGTGGTTCTGATAACCTCATATGGTTCGAACGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

149

Amino Acids

17.04

Weight (kDa)

8.6

Isoelectric Point (pI)

26.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011266)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 253
AccB1I GGYRCC 1 cut(s) 358
AciI CCGC 1 cut(s) 71
AclWI GGATC 1 cut(s) 388
AcsI RAATTY 1 cut(s) 15
AfaI GTAC 1 cut(s) 240
AgsI TTSAA 2 cut(s) 52, 322
Alw26I GTCTC 2 cut(s) 130, 271
AlwI GGATC 1 cut(s) 388
AoxI GGCC 1 cut(s) 142
ApoI RAATTY 1 cut(s) 15
AspA2I CCTAGG 1 cut(s) 145
AsuHPI GGTGA 2 cut(s) 89, 227
AsuII TTCGAA 1 cut(s) 441
AvrII CCTAGG 1 cut(s) 145
BanI GGYRCC 1 cut(s) 358
BccI CCATC 3 cut(s) 74, 252, 285
BcoDI GTCTC 2 cut(s) 130, 271
BfaI CTAG 1 cut(s) 146
BfuAI ACCTGC 1 cut(s) 253
BlnI CCTAGG 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 360
Bpu14I TTCGAA 1 cut(s) 441
BsaBI GATNNNNATC 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 271
BsaJI CCNNGG 2 cut(s) 145, 211
Bse8I GATNNNNATC 1 cut(s) 171
BseDI CCNNGG 2 cut(s) 145, 211
BseGI GGATG 1 cut(s) 277
BseJI GATNNNNATC 1 cut(s) 171
BseYI CCCAGC 1 cut(s) 401
BshFI GGCC 1 cut(s) 144
BshNI GGYRCC 1 cut(s) 358
BsmAI GTCTC 2 cut(s) 130, 271
BsmBI CGTCTC 1 cut(s) 130
BsnI GGCC 1 cut(s) 144
Bso31I GGTCTC 1 cut(s) 271
Bsp119I TTCGAA 1 cut(s) 441
Bsp143I GATC 3 cut(s) 353, 370, 393
BspACI CCGC 1 cut(s) 71
BspANI GGCC 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 360
BspMI ACCTGC 1 cut(s) 253
BspPI GGATC 1 cut(s) 388
BspT104I TTCGAA 1 cut(s) 441
BspT107I GGYRCC 1 cut(s) 358
BspTNI GGTCTC 1 cut(s) 271
BssECI CCNNGG 2 cut(s) 145, 211
BssMI GATC 3 cut(s) 353, 370, 393
BssT1I CCWWGG 2 cut(s) 145, 211
Bst4CI ACNGT 2 cut(s) 10, 447
BstBI TTCGAA 1 cut(s) 441
BstC8I GCNNGC 2 cut(s) 186, 300
BstDEI CTNAG 2 cut(s) 162, 189
BstF5I GGATG 1 cut(s) 277
BstKTI GATC 3 cut(s) 356, 373, 396
BstMAI GTCTC 2 cut(s) 130, 271
BstMBI GATC 3 cut(s) 353, 370, 393
BstMWI GCNNNNNNNGC 1 cut(s) 407
BstX2I RGATCY 1 cut(s) 393
BstYI RGATCY 1 cut(s) 393
BsuRI GGCC 1 cut(s) 144
BtsCI GGATG 1 cut(s) 277
BveI ACCTGC 1 cut(s) 253
Cac8I GCNNGC 2 cut(s) 186, 300
CseI GACGC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 239
CviAII CATG 2 cut(s) 329, 340
CviJI RGCY 4 cut(s) 39, 144, 333, 381
CviKI_1 RGCY 4 cut(s) 39, 144, 333, 381
CviQI GTAC 1 cut(s) 239
DdeI CTNAG 2 cut(s) 162, 189
DpnI GATC 3 cut(s) 355, 372, 395
DpnII GATC 3 cut(s) 353, 370, 393
Eco130I CCWWGG 2 cut(s) 145, 211
Eco31I GGTCTC 1 cut(s) 271
EcoT14I CCWWGG 2 cut(s) 145, 211
ErhI CCWWGG 2 cut(s) 145, 211
Esp3I CGTCTC 1 cut(s) 130
FaeI CATG 2 cut(s) 332, 343
FalI AAGNNNNNCTT 2 cut(s) 302, 334
FatI CATG 2 cut(s) 328, 339
FauNDI CATATG 1 cut(s) 434
FokI GGATG 1 cut(s) 264
FspBI CTAG 1 cut(s) 146
GsaI CCCAGC 1 cut(s) 405
HaeIII GGCC 1 cut(s) 144
HgaI GACGC 1 cut(s) 112
Hin1II CATG 2 cut(s) 332, 343
HinfI GANTC 1 cut(s) 172
HphI GGTGA 2 cut(s) 89, 227
Hpy188I TCNGA 2 cut(s) 375, 424
Hpy188III TCNNGA 2 cut(s) 319, 365
HpyCH4III ACNGT 2 cut(s) 10, 447
HpyCH4V TGCA 3 cut(s) 4, 159, 298
HpyF10VI GCNNNNNNNGC 1 cut(s) 407
HpyF3I CTNAG 2 cut(s) 162, 189
Hsp92II CATG 2 cut(s) 332, 343
Kzo9I GATC 3 cut(s) 353, 370, 393
LpnPI CCDG 6 cut(s) 248, 319, 378, 387, 396, 411
MaeI CTAG 1 cut(s) 146
MaeIII GTNAC 1 cut(s) 32
MalI GATC 3 cut(s) 355, 372, 395
MboI GATC 3 cut(s) 353, 370, 393
MboII GAAGA 2 cut(s) 100, 403
MflI RGATCY 1 cut(s) 393
MluCI AATT 5 cut(s) 15, 106, 150, 292, 384
MnlI CCTC 3 cut(s) 291, 372, 440
MseI TTAA 2 cut(s) 153, 350
MslI CAYNNNNRTG 1 cut(s) 252
MwoI GCNNNNNNNGC 1 cut(s) 407
NdeI CATATG 1 cut(s) 434
NdeII GATC 3 cut(s) 353, 370, 393
NlaIII CATG 2 cut(s) 332, 343
NlaIV GGNNCC 1 cut(s) 360
NmuCI GTSAC 1 cut(s) 32
NspV TTCGAA 1 cut(s) 441
PfeI GAWTC 1 cut(s) 172
PspFI CCCAGC 1 cut(s) 401
PspN4I GGNNCC 1 cut(s) 360
PsuI RGATCY 1 cut(s) 393
RsaI GTAC 1 cut(s) 240
RsaNI GTAC 1 cut(s) 239
RseI CAYNNNNRTG 1 cut(s) 252
SaqAI TTAA 2 cut(s) 153, 350
Sau3AI GATC 3 cut(s) 353, 370, 393
SetI ASST 4 cut(s) 102, 217, 267, 432
SfuI TTCGAA 1 cut(s) 441
SmiMI CAYNNNNRTG 1 cut(s) 252
Sse9I AATT 5 cut(s) 15, 106, 150, 292, 384
SsiI CCGC 1 cut(s) 71
SspMI CTAG 1 cut(s) 146
StyI CCWWGG 2 cut(s) 145, 211
TaaI ACNGT 2 cut(s) 10, 447
TaqI TCGA 1 cut(s) 441
TasI AATT 5 cut(s) 15, 106, 150, 292, 384
TatI WGTACW 1 cut(s) 238
TfiI GAWTC 1 cut(s) 172
Tru1I TTAA 2 cut(s) 153, 350
Tru9I TTAA 2 cut(s) 153, 350
TseFI GTSAC 1 cut(s) 32
Tsp45I GTSAC 1 cut(s) 32
TspDTI ATGAA 1 cut(s) 185
XapI RAATTY 1 cut(s) 15
XmaJI CCTAGG 1 cut(s) 145
XspI CTAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.