Rroxscaffold_1G00028130

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0011266
Physical Location & Seq
Forward (+)
35836171 .. 35837328
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00028130.1

Sequence Viewer

Length: 489 bp
ATGCTTCCTCGTCTTTCACTTCACAGTGAATTATCTCTACTCCCTCTCACGAACAAGCTAATTCTAGTGCCTGCATGGCGGCATGGTGTTTGCAACACCAACAAGAAGCCATGGTCATATTGTTCATCATCATCTGATAGAACAAGTGTTGTTCGTGCATTGAAGGAAGAGTCGCAGCAGTTTGAAGTAGACCCAGAGAAGGCCAGAGAGGCCCTTAAAAATCTTGATCAGCAGTTTCAATCTCGCTCCCAGAAACAAGTTCGCTCGAGACCCAAGAAAGAACCTGCTCCCTCTGTGAATTTTACAAGAAATCAAACAAAAGAAGCAGCTGAGGAATTTTCAGGATCTTTTTTCACATACACGGCCGTTGCTCTCATTGCTTTCACAATTTTCTATAATGTGTTCTTTTACACTGTTATAAAGCCATCTGTAGATGGATTTTCAGAGGACGCACCAACCAAAAATGTTGTAAGCGAAATCCCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.42

Weight (kDa)

9.27

Isoelectric Point (pI)

52.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01870
fragaria_vesca FvH4_3g28750
malus_domestica MD03G1174000.v1.1 MD11G1192200.v1.1
prunus_persica Prupe.4G250100_v2.0.a1
pyrus_communis pycom03g13160 pycom11g16800
rosa_chinensis RchiOBHm_Chr5g0052301
rosa_laevigata RLG00000034827
rosa_multiflora Rmu_sc0021240.1_g000003 Rmu_sc0028377.1_g000002
rosa_roxburghii Rroxscaffold_1G00028130 Rroxscaffold_1G00028140
rosa_rugosa Rorug05G0273000
rosa_samantha Rh5AG345900 Rh5BG356600 Rh5CG381900 Rh5DG371800
rosa_wichuraiana Rw5G032620 Rw5G032660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 419
Acc36I ACCTGC 1 cut(s) 292
AccI GTMKAC 1 cut(s) 189
AciI CCGC 1 cut(s) 79
AclWI GGATC 1 cut(s) 352
AcoI YGGCCR 1 cut(s) 363
AcsI RAATTY 2 cut(s) 298, 335
AfiI CCNNNNNNNGG 1 cut(s) 199
AgsI TTSAA 3 cut(s) 163, 185, 239
AluBI AGCT 2 cut(s) 58, 329
AluI AGCT 2 cut(s) 58, 329
Alw26I GTCTC 1 cut(s) 262
AlwI GGATC 1 cut(s) 352
Ama87I CYCGRG 1 cut(s) 265
AoxI GGCC 3 cut(s) 201, 210, 363
ApeKI GCWGC 2 cut(s) 175, 326
ApoI RAATTY 2 cut(s) 298, 335
AspS9I GGNCC 1 cut(s) 211
AvaI CYCGRG 1 cut(s) 265
BbvCI CCTCAGC 1 cut(s) 330
BbvI GCAGC 2 cut(s) 187, 338
BccI CCATC 2 cut(s) 428, 433
BceAI ACGGC 2 cut(s) 350, 378
BclI TGATCA 1 cut(s) 226
BcoDI GTCTC 1 cut(s) 262
BfaI CTAG 1 cut(s) 65
BfmI CTRYAG 1 cut(s) 429
BfuAI ACCTGC 1 cut(s) 292
BglI GCCNNNNNGGC 2 cut(s) 76, 209
BisI GCNGC 3 cut(s) 80, 176, 327
BlsI GCNGC 3 cut(s) 81, 177, 328
BmeT110I CYCGRG 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 211
Bpu10I CCTNAGC 1 cut(s) 330
BsaI GGTCTC 1 cut(s) 262
BsaJI CCNNGG 1 cut(s) 110
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse3DI GCAATG 1 cut(s) 375
BseDI CCNNGG 1 cut(s) 110
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMI GCAATG 1 cut(s) 375
BseMII CTCAG 1 cut(s) 321
BseX3I CGGCCG 1 cut(s) 363
BseXI GCAGC 2 cut(s) 187, 338
Bsh1285I CGRYCG 1 cut(s) 366
BshFI GGCC 3 cut(s) 203, 212, 365
BsiEI CGRYCG 1 cut(s) 366
BsiHKCI CYCGRG 1 cut(s) 265
BslI CCNNNNNNNGG 1 cut(s) 199
BsmAI GTCTC 1 cut(s) 262
BsnI GGCC 3 cut(s) 203, 212, 365
Bso31I GGTCTC 1 cut(s) 262
BsoBI CYCGRG 1 cut(s) 265
Bsp143I GATC 2 cut(s) 226, 344
Bsp19I CCATGG 1 cut(s) 110
BspACI CCGC 1 cut(s) 79
BspANI GGCC 3 cut(s) 203, 212, 365
BspCNI CTCAG 1 cut(s) 322
BspMI ACCTGC 1 cut(s) 292
BspPI GGATC 1 cut(s) 352
BspTNI GGTCTC 1 cut(s) 262
BsrDI GCAATG 1 cut(s) 375
BssECI CCNNGG 1 cut(s) 110
BssMI GATC 2 cut(s) 226, 344
BssT1I CCWWGG 1 cut(s) 110
Bst4CI ACNGT 2 cut(s) 26, 415
Bst6I CTCTTC 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 330
BstDSI CCRYGG 1 cut(s) 110
BstKTI GATC 2 cut(s) 229, 347
BstMAI GTCTC 1 cut(s) 262
BstMBI GATC 2 cut(s) 226, 344
BstMCI CGRYCG 1 cut(s) 366
BstMWI GCNNNNNNNGC 3 cut(s) 76, 209, 377
BstSFI CTRYAG 1 cut(s) 429
BstV1I GCAGC 2 cut(s) 187, 338
BstX2I RGATCY 1 cut(s) 344
BstYI RGATCY 1 cut(s) 344
BstZI CGGCCG 1 cut(s) 363
BsuRI GGCC 3 cut(s) 203, 212, 365
BtgI CCRYGG 1 cut(s) 110
BtsIMutI CAGTG 2 cut(s) 31, 411
BveI ACCTGC 1 cut(s) 292
Cac8I GCNNGC 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 211
CseI GACGC 1 cut(s) 458
CviAII CATG 3 cut(s) 75, 83, 111
CviJI RGCY 7 cut(s) 58, 109, 203, 212, 329, 365, 424
CviKI_1 RGCY 7 cut(s) 58, 109, 203, 212, 329, 365, 424
DdeI CTNAG 1 cut(s) 330
DpnI GATC 2 cut(s) 228, 346
DpnII GATC 2 cut(s) 226, 344
EaeI YGGCCR 1 cut(s) 363
EagI CGGCCG 1 cut(s) 363
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
EclXI CGGCCG 1 cut(s) 363
Eco130I CCWWGG 1 cut(s) 110
Eco31I GGTCTC 1 cut(s) 262
Eco52I CGGCCG 1 cut(s) 363
Eco88I CYCGRG 1 cut(s) 265
EcoO109I RGGNCCY 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 110
ErhI CCWWGG 1 cut(s) 110
FaeI CATG 3 cut(s) 78, 86, 114
FaiI YATR 7 cut(s) 76, 84, 112, 118, 358, 396, 419
FatI CATG 3 cut(s) 74, 82, 110
FbaI TGATCA 1 cut(s) 226
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 3 cut(s) 80, 176, 327
Fsp4HI GCNGC 3 cut(s) 80, 176, 327
FspBI CTAG 1 cut(s) 65
GluI GCNGC 3 cut(s) 80, 176, 327
HaeIII GGCC 3 cut(s) 203, 212, 365
HgaI GACGC 1 cut(s) 458
Hin1II CATG 3 cut(s) 78, 86, 114
HinfI GANTC 1 cut(s) 170
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 2 cut(s) 136, 445
Hpy188III TCNNGA 4 cut(s) 49, 224, 267, 342
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 2 cut(s) 157, 193
HpyCH4III ACNGT 2 cut(s) 26, 415
HpyCH4V TGCA 3 cut(s) 74, 93, 158
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 209, 377
HpyF3I CTNAG 1 cut(s) 330
Hsp92II CATG 3 cut(s) 78, 86, 114
Ksp22I TGATCA 1 cut(s) 226
Kzo9I GATC 2 cut(s) 226, 344
LmnI GCTCC 2 cut(s) 251, 292
LpnPI CCDG 6 cut(s) 84, 207, 217, 263, 297, 327
Lsp1109I GCAGC 2 cut(s) 187, 338
MaeI CTAG 1 cut(s) 65
MalI GATC 2 cut(s) 228, 346
MboI GATC 2 cut(s) 226, 344
MboII GAAGA 1 cut(s) 179
MflI RGATCY 1 cut(s) 344
MluCI AATT 5 cut(s) 29, 60, 298, 335, 387
MlyI GAGTC 1 cut(s) 179
MnlI CCTC 6 cut(s) 18, 54, 202, 301, 325, 439
MseI TTAA 1 cut(s) 216
MspA1I CMGCKG 1 cut(s) 329
MwoI GCNNNNNNNGC 3 cut(s) 76, 209, 377
NcoI CCATGG 1 cut(s) 110
NdeII GATC 2 cut(s) 226, 344
NlaIII CATG 3 cut(s) 78, 86, 114
PaeR7I CTCGAG 1 cut(s) 265
PkrI GCNGC 3 cut(s) 81, 177, 328
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
PsiI TTATAA 1 cut(s) 419
PspPI GGNCC 1 cut(s) 211
PsuI RGATCY 1 cut(s) 344
PvuII CAGCTG 1 cut(s) 329
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 3 cut(s) 80, 176, 327
Sau3AI GATC 2 cut(s) 226, 344
Sau96I GGNCC 1 cut(s) 211
SchI GAGTC 1 cut(s) 179
SetI ASST 3 cut(s) 60, 286, 331
SfcI CTRYAG 1 cut(s) 429
SfiI GGCCNNNNNGGCC 1 cut(s) 209
Sfr274I CTCGAG 1 cut(s) 265
SlaI CTCGAG 1 cut(s) 265
SmlI CTYRAG 1 cut(s) 265
SmoI CTYRAG 1 cut(s) 265
Sse9I AATT 5 cut(s) 29, 60, 298, 335, 387
SsiI CCGC 1 cut(s) 79
SspMI CTAG 1 cut(s) 65
StyI CCWWGG 1 cut(s) 110
TaaI ACNGT 2 cut(s) 26, 415
TaqI TCGA 1 cut(s) 266
TasI AATT 5 cut(s) 29, 60, 298, 335, 387
TauI GCSGC 1 cut(s) 82
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 2 cut(s) 31, 418
TseI GCWGC 2 cut(s) 175, 326
TspDTI ATGAA 1 cut(s) 114
TspRI CASTG 2 cut(s) 31, 418
XapI RAATTY 2 cut(s) 298, 335
XhoI CTCGAG 1 cut(s) 265
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.