Rmu_sc0028377.1_g000002

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0028377.1
OG0011266
Physical Location & Seq
Forward (+)
6077 .. 6696
620 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0028377.1_g000002.1.cds

Sequence Viewer

Length: 453 bp
atgcaattggcagtgaaaattcctatgtccatttgtgacagccttgataagttgaatagagattttttatgggcggtttatgatggtaagaagaaaactcaccttgctaattgggagttagtttgcagacctaaagaatttggtggcctaggaattaaatgcactaaggatatgaatcagtctatgcttgctaagattgggtggagaatgttccaaggtgataagggtctgtggagtgatgtactccatcataaatatgtcaagcaggtctcttttctccatcctcataacactaatttgcaagcaaaagtcaaggatttcttgaatgagcatggctggaacatggatttattaagatcggtgcctcctgatgatctgattagccaaattgtgaagatccctgctgggtttgctggttgtggttctgataacctcatatggttcgaccggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

150

Amino Acids

17.21

Weight (kDa)

8.9

Isoelectric Point (pI)

29.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01870
fragaria_vesca FvH4_3g28750
malus_domestica MD03G1174000.v1.1 MD11G1192200.v1.1
prunus_persica Prupe.4G250100_v2.0.a1
pyrus_communis pycom03g13160 pycom11g16800
rosa_chinensis RchiOBHm_Chr5g0052301
rosa_laevigata RLG00000034827
rosa_multiflora Rmu_sc0021240.1_g000003 Rmu_sc0028377.1_g000002
rosa_roxburghii Rroxscaffold_1G00028130 Rroxscaffold_1G00028140
rosa_rugosa Rorug05G0273000
rosa_samantha Rh5AG345900 Rh5BG356600 Rh5CG381900 Rh5DG371800
rosa_wichuraiana Rw5G032620 Rw5G032660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 256
AccB1I GGYRCC 1 cut(s) 361
AciI CCGC 1 cut(s) 74
AclWI GGATC 1 cut(s) 391
AcsI RAATTY 2 cut(s) 18, 137
AfaI GTAC 1 cut(s) 243
AgeI ACCGGT 1 cut(s) 447
AgsI TTSAA 2 cut(s) 55, 325
Alw26I GTCTC 1 cut(s) 274
AlwI GGATC 1 cut(s) 391
AoxI GGCC 1 cut(s) 145
ApoI RAATTY 2 cut(s) 18, 137
AsiGI ACCGGT 1 cut(s) 447
AspA2I CCTAGG 1 cut(s) 148
AsuHPI GGTGA 2 cut(s) 92, 230
AvrII CCTAGG 1 cut(s) 148
BanI GGYRCC 1 cut(s) 361
BccI CCATC 3 cut(s) 77, 255, 288
BcoDI GTCTC 1 cut(s) 274
BfaI CTAG 1 cut(s) 149
BfuAI ACCTGC 1 cut(s) 256
BlnI CCTAGG 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 363
BsaBI GATNNNNATC 1 cut(s) 174
BsaI GGTCTC 1 cut(s) 274
BsaJI CCNNGG 2 cut(s) 148, 214
BsaWI WCCGGW 1 cut(s) 447
Bse118I RCCGGY 1 cut(s) 447
Bse8I GATNNNNATC 1 cut(s) 174
BseDI CCNNGG 2 cut(s) 148, 214
BseGI GGATG 1 cut(s) 280
BseJI GATNNNNATC 1 cut(s) 174
BseYI CCCAGC 1 cut(s) 404
Bsh1285I CGRYCG 1 cut(s) 448
BshFI GGCC 1 cut(s) 147
BshNI GGYRCC 1 cut(s) 361
BshTI ACCGGT 1 cut(s) 447
BsiEI CGRYCG 1 cut(s) 448
BsiSI CCGG 1 cut(s) 448
BsmAI GTCTC 1 cut(s) 274
BsnI GGCC 1 cut(s) 147
Bso31I GGTCTC 1 cut(s) 274
Bsp143I GATC 3 cut(s) 356, 373, 396
BspACI CCGC 1 cut(s) 74
BspANI GGCC 1 cut(s) 147
BspLI GGNNCC 1 cut(s) 363
BspMI ACCTGC 1 cut(s) 256
BspPI GGATC 1 cut(s) 391
BspT107I GGYRCC 1 cut(s) 361
BspTNI GGTCTC 1 cut(s) 274
BsrFI RCCGGY 1 cut(s) 447
BssAI RCCGGY 1 cut(s) 447
BssECI CCNNGG 2 cut(s) 148, 214
BssMI GATC 3 cut(s) 356, 373, 396
BssT1I CCWWGG 2 cut(s) 148, 214
BstC8I GCNNGC 2 cut(s) 189, 303
BstDEI CTNAG 2 cut(s) 165, 192
BstF5I GGATG 1 cut(s) 280
BstKTI GATC 3 cut(s) 359, 376, 399
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 3 cut(s) 356, 373, 396
BstMCI CGRYCG 1 cut(s) 448
BstMWI GCNNNNNNNGC 1 cut(s) 410
BstX2I RGATCY 1 cut(s) 396
BstYI RGATCY 1 cut(s) 396
BsuRI GGCC 1 cut(s) 147
BtsCI GGATG 1 cut(s) 280
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 18
BveI ACCTGC 1 cut(s) 256
Cac8I GCNNGC 2 cut(s) 189, 303
Cfr10I RCCGGY 1 cut(s) 447
Csp6I GTAC 1 cut(s) 242
CspAI ACCGGT 1 cut(s) 447
CviAII CATG 2 cut(s) 332, 343
CviJI RGCY 4 cut(s) 42, 147, 336, 384
CviKI_1 RGCY 4 cut(s) 42, 147, 336, 384
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 2 cut(s) 165, 192
DpnI GATC 3 cut(s) 358, 375, 398
DpnII GATC 3 cut(s) 356, 373, 396
Eco130I CCWWGG 2 cut(s) 148, 214
Eco31I GGTCTC 1 cut(s) 274
EcoT14I CCWWGG 2 cut(s) 148, 214
ErhI CCWWGG 2 cut(s) 148, 214
FaeI CATG 2 cut(s) 335, 346
FalI AAGNNNNNCTT 2 cut(s) 305, 337
FatI CATG 2 cut(s) 331, 342
FauNDI CATATG 1 cut(s) 437
FokI GGATG 1 cut(s) 267
FspBI CTAG 1 cut(s) 149
GsaI CCCAGC 1 cut(s) 408
HaeIII GGCC 1 cut(s) 147
HapII CCGG 1 cut(s) 448
Hin1II CATG 2 cut(s) 335, 346
HinfI GANTC 1 cut(s) 175
HpaII CCGG 1 cut(s) 448
HphI GGTGA 2 cut(s) 92, 230
Hpy188I TCNGA 2 cut(s) 378, 427
Hpy188III TCNNGA 2 cut(s) 322, 368
HpyCH4V TGCA 4 cut(s) 4, 126, 162, 301
HpyF10VI GCNNNNNNNGC 1 cut(s) 410
HpyF3I CTNAG 2 cut(s) 165, 192
Hsp92II CATG 2 cut(s) 335, 346
Kzo9I GATC 3 cut(s) 356, 373, 396
LpnPI CCDG 6 cut(s) 251, 322, 381, 390, 399, 414
MaeI CTAG 1 cut(s) 149
MaeIII GTNAC 1 cut(s) 35
MalI GATC 3 cut(s) 358, 375, 398
MboI GATC 3 cut(s) 356, 373, 396
MboII GAAGA 2 cut(s) 103, 406
MfeI CAATTG 1 cut(s) 5
MflI RGATCY 1 cut(s) 396
MluCI AATT 7 cut(s) 5, 18, 109, 137, 153, 295, 387
MnlI CCTC 3 cut(s) 294, 375, 443
MseI TTAA 2 cut(s) 156, 353
MslI CAYNNNNRTG 1 cut(s) 255
MspI CCGG 1 cut(s) 448
MunI CAATTG 1 cut(s) 5
MwoI GCNNNNNNNGC 1 cut(s) 410
NdeI CATATG 1 cut(s) 437
NdeII GATC 3 cut(s) 356, 373, 396
NlaIII CATG 2 cut(s) 335, 346
NlaIV GGNNCC 1 cut(s) 363
NmuCI GTSAC 1 cut(s) 35
PfeI GAWTC 1 cut(s) 175
PinAI ACCGGT 1 cut(s) 447
PspFI CCCAGC 1 cut(s) 404
PspN4I GGNNCC 1 cut(s) 363
PsuI RGATCY 1 cut(s) 396
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
RseI CAYNNNNRTG 1 cut(s) 255
SaqAI TTAA 2 cut(s) 156, 353
Sau3AI GATC 3 cut(s) 356, 373, 396
SetI ASST 5 cut(s) 105, 133, 220, 270, 435
SmiMI CAYNNNNRTG 1 cut(s) 255
Sse9I AATT 7 cut(s) 5, 18, 109, 137, 153, 295, 387
SsiI CCGC 1 cut(s) 74
SspMI CTAG 1 cut(s) 149
StyI CCWWGG 2 cut(s) 148, 214
TaqI TCGA 1 cut(s) 444
TasI AATT 7 cut(s) 5, 18, 109, 137, 153, 295, 387
TatI WGTACW 1 cut(s) 241
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 2 cut(s) 156, 353
Tru9I TTAA 2 cut(s) 156, 353
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 35
TspDTI ATGAA 1 cut(s) 188
TspRI CASTG 1 cut(s) 18
XapI RAATTY 2 cut(s) 18, 137
XmaJI CCTAGG 1 cut(s) 148
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.