Rw5G032620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0011266
Physical Location & Seq
Reverse (-)
55338588 .. 55339723
1136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G032620.1

Sequence Viewer

Length: 486 bp
ATGCTTCCTCCTCTTTCACTTCACAGTGAATTATCTCTACTTCCTCTCACGAACAAGCTAATTCTAGTGCCTGCATGGCATGGTGTTTGCAACACCAACAAGAAGCCATGGTCATATCGTTCATCATCATCTGATAGAACAAGTGTTGTTCGTGCATTGAAGGAAGAGTCGCAGCAGTTTGAAGTAGACCCAGAGAAGGCTAGAGAGGCCCTTAAAAATCTTGATCAGCAGTTTCAATCTCGCTCCCAGAAACAAGTCCGCTCGAGACCCAAGAAAGAACCTGCTCCCTCTGTGAATTTTACAAGAAATCAAACAAAAGAAGCAGCTGAGGAATTTTCAGGATCTTTTTTCACATACACGGCTGTTGCTCTCATTGCTTTCACAATTTTCTATAATGTGTTCTTTTACACTGTTATAAAGCCATCTGTAGATGGATTTTCAGAGGACGCACCAACCAAAAATGTTGTAAGCGAAATCCCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

18.26

Weight (kDa)

9.21

Isoelectric Point (pI)

56.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01870
fragaria_vesca FvH4_3g28750
malus_domestica MD03G1174000.v1.1 MD11G1192200.v1.1
prunus_persica Prupe.4G250100_v2.0.a1
pyrus_communis pycom03g13160 pycom11g16800
rosa_chinensis RchiOBHm_Chr5g0052301
rosa_laevigata RLG00000034827
rosa_multiflora Rmu_sc0021240.1_g000003 Rmu_sc0028377.1_g000002
rosa_roxburghii Rroxscaffold_1G00028130 Rroxscaffold_1G00028140
rosa_rugosa Rorug05G0273000
rosa_samantha Rh5AG345900 Rh5BG356600 Rh5CG381900 Rh5DG371800
rosa_wichuraiana Rw5G032620 Rw5G032660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 416
Acc36I ACCTGC 1 cut(s) 289
AccBSI CCGCTC 1 cut(s) 261
AccI GTMKAC 1 cut(s) 186
AciI CCGC 1 cut(s) 259
AclWI GGATC 1 cut(s) 349
AcsI RAATTY 2 cut(s) 295, 332
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 3 cut(s) 160, 182, 236
AluBI AGCT 2 cut(s) 58, 326
AluI AGCT 2 cut(s) 58, 326
Alw26I GTCTC 1 cut(s) 259
AlwI GGATC 1 cut(s) 349
Ama87I CYCGRG 1 cut(s) 262
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 2 cut(s) 172, 323
ApoI RAATTY 2 cut(s) 295, 332
AspS9I GGNCC 1 cut(s) 208
AvaI CYCGRG 1 cut(s) 262
BbvCI CCTCAGC 1 cut(s) 327
BbvI GCAGC 2 cut(s) 184, 335
BccI CCATC 2 cut(s) 425, 430
BceAI ACGGC 1 cut(s) 375
BclI TGATCA 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 259
BfaI CTAG 2 cut(s) 65, 201
BfmI CTRYAG 1 cut(s) 426
BfuAI ACCTGC 1 cut(s) 289
BglI GCCNNNNNGGC 1 cut(s) 76
BisI GCNGC 2 cut(s) 173, 324
BlsI GCNGC 2 cut(s) 174, 325
BmeT110I CYCGRG 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 208
Bpu10I CCTNAGC 1 cut(s) 327
BsaI GGTCTC 1 cut(s) 259
BsaJI CCNNGG 1 cut(s) 107
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse3DI GCAATG 1 cut(s) 372
BseDI CCNNGG 1 cut(s) 107
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMI GCAATG 1 cut(s) 372
BseMII CTCAG 1 cut(s) 318
BseXI GCAGC 2 cut(s) 184, 335
BshFI GGCC 1 cut(s) 209
BsiHKCI CYCGRG 1 cut(s) 262
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 1 cut(s) 259
BsnI GGCC 1 cut(s) 209
Bso31I GGTCTC 1 cut(s) 259
BsoBI CYCGRG 1 cut(s) 262
Bsp143I GATC 2 cut(s) 223, 341
Bsp19I CCATGG 1 cut(s) 107
BspACI CCGC 1 cut(s) 259
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 1 cut(s) 319
BspMI ACCTGC 1 cut(s) 289
BspPI GGATC 1 cut(s) 349
BspTNI GGTCTC 1 cut(s) 259
BsrBI CCGCTC 1 cut(s) 261
BsrDI GCAATG 1 cut(s) 372
BssECI CCNNGG 1 cut(s) 107
BssMI GATC 2 cut(s) 223, 341
BssT1I CCWWGG 1 cut(s) 107
Bst4CI ACNGT 2 cut(s) 26, 412
Bst6I CTCTTC 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 327
BstDSI CCRYGG 1 cut(s) 107
BstKTI GATC 2 cut(s) 226, 344
BstMAI GTCTC 1 cut(s) 259
BstMBI GATC 2 cut(s) 223, 341
BstMWI GCNNNNNNNGC 3 cut(s) 76, 206, 374
BstSFI CTRYAG 1 cut(s) 426
BstV1I GCAGC 2 cut(s) 184, 335
BstX2I RGATCY 1 cut(s) 341
BstYI RGATCY 1 cut(s) 341
BsuRI GGCC 1 cut(s) 209
BtgI CCRYGG 1 cut(s) 107
BtsIMutI CAGTG 2 cut(s) 31, 408
BveI ACCTGC 1 cut(s) 289
Cac8I GCNNGC 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 208
CseI GACGC 1 cut(s) 455
CviAII CATG 3 cut(s) 75, 80, 108
CviJI RGCY 7 cut(s) 58, 106, 200, 209, 326, 362, 421
CviKI_1 RGCY 7 cut(s) 58, 106, 200, 209, 326, 362, 421
DdeI CTNAG 1 cut(s) 327
DpnI GATC 2 cut(s) 225, 343
DpnII GATC 2 cut(s) 223, 341
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 107
Eco31I GGTCTC 1 cut(s) 259
Eco88I CYCGRG 1 cut(s) 262
EcoO109I RGGNCCY 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 107
ErhI CCWWGG 1 cut(s) 107
FaeI CATG 3 cut(s) 78, 83, 111
FaiI YATR 7 cut(s) 76, 81, 109, 115, 355, 393, 416
FatI CATG 3 cut(s) 74, 79, 107
FbaI TGATCA 1 cut(s) 223
FblI GTMKAC 1 cut(s) 186
Fnu4HI GCNGC 2 cut(s) 173, 324
Fsp4HI GCNGC 2 cut(s) 173, 324
FspBI CTAG 2 cut(s) 65, 201
GluI GCNGC 2 cut(s) 173, 324
HaeIII GGCC 1 cut(s) 209
HgaI GACGC 1 cut(s) 455
Hin1II CATG 3 cut(s) 78, 83, 111
HinfI GANTC 1 cut(s) 167
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 2 cut(s) 133, 442
Hpy188III TCNNGA 4 cut(s) 49, 221, 264, 339
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 2 cut(s) 154, 190
HpyCH4III ACNGT 2 cut(s) 26, 412
HpyCH4V TGCA 3 cut(s) 74, 90, 155
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 206, 374
HpyF3I CTNAG 1 cut(s) 327
Hsp92II CATG 3 cut(s) 78, 83, 111
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 2 cut(s) 223, 341
LmnI GCTCC 2 cut(s) 248, 289
LpnPI CCDG 5 cut(s) 84, 204, 260, 294, 324
Lsp1109I GCAGC 2 cut(s) 184, 335
MaeI CTAG 2 cut(s) 65, 201
MalI GATC 2 cut(s) 225, 343
MbiI CCGCTC 1 cut(s) 261
MboI GATC 2 cut(s) 223, 341
MboII GAAGA 1 cut(s) 176
MflI RGATCY 1 cut(s) 341
MluCI AATT 5 cut(s) 29, 60, 295, 332, 384
MlyI GAGTC 1 cut(s) 176
MnlI CCTC 7 cut(s) 18, 21, 54, 199, 298, 322, 436
MseI TTAA 1 cut(s) 213
MspA1I CMGCKG 1 cut(s) 326
MwoI GCNNNNNNNGC 3 cut(s) 76, 206, 374
NcoI CCATGG 1 cut(s) 107
NdeII GATC 2 cut(s) 223, 341
NlaIII CATG 3 cut(s) 78, 83, 111
PaeR7I CTCGAG 1 cut(s) 262
PkrI GCNGC 2 cut(s) 174, 325
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
PsiI TTATAA 1 cut(s) 416
PspPI GGNCC 1 cut(s) 208
PsuI RGATCY 1 cut(s) 341
PvuII CAGCTG 1 cut(s) 326
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 2 cut(s) 173, 324
Sau3AI GATC 2 cut(s) 223, 341
Sau96I GGNCC 1 cut(s) 208
SchI GAGTC 1 cut(s) 176
SetI ASST 3 cut(s) 60, 283, 328
SfcI CTRYAG 1 cut(s) 426
Sfr274I CTCGAG 1 cut(s) 262
SlaI CTCGAG 1 cut(s) 262
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
Sse9I AATT 5 cut(s) 29, 60, 295, 332, 384
SsiI CCGC 1 cut(s) 259
SspMI CTAG 2 cut(s) 65, 201
StyI CCWWGG 1 cut(s) 107
TaaI ACNGT 2 cut(s) 26, 412
TaqI TCGA 1 cut(s) 263
TasI AATT 5 cut(s) 29, 60, 295, 332, 384
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 2 cut(s) 31, 415
TseI GCWGC 2 cut(s) 172, 323
TspDTI ATGAA 1 cut(s) 111
TspRI CASTG 2 cut(s) 31, 415
XapI RAATTY 2 cut(s) 295, 332
XhoI CTCGAG 1 cut(s) 262
XmiI GTMKAC 1 cut(s) 186
XspI CTAG 2 cut(s) 65, 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.