Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021240.1

Orthogroup ID

OG0011266

Physical Location & Seq

Genomic Coordinates Reverse (-)

17671 .. 20448

Gene Structure 2778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021240.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

atgcttcctcctctttcacttcacagtgaattatctctacttcctctcacgaacaagctaattctagtgcctgcatggcggcatggtgtttgcaacaccaacaagaagccatggtcatatcgttcatcatcatcatctgatagaactagtgttgttcgtgcattgaaggaagagtcgcagcagtttgaagtagacccagagaaggccagagaggcccttaaaaatcttgatcagcagtttcaatctcgctcccagaaacaagtccgctcgagacccaagaaagaacctgtgaaaattcctatgtccatttgtgacagccttgataagttgaatagagattttttatgggcggtttatgatggtaagaagaaaactcaccttgctaattgggagttagtttgcagacctaaagaatttggtggcctaggaattaaatgcactaaggatatgaatcagtctatgcttgctaagattgggtggagaatgttccaaggtgataagggtctatggagtgatgtactccatcataaatatgtcaagcaggtctcttttctccatgctcagtattcttgtcctactaggtgttctagcacatggcgaggggtattatttggctccaaattattgcagaaaggtctaatatggagaattggtgatggaaactcagttaatttttggactgatacatggtttcatagaaaacccttaattcttacttctgatccttctagtaacactaatttgcaagcaaaagtcaaggatttcttgaatgagcatggctggaacatggatttattaagatcggtgcctcctgatgatctgattagccaaattgtgaagatccctgctgggtttgctggttgtggttctgataacctcatatggttcgaccggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

298

Amino Acids

34.18

Weight (kDa)

9.57

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01870
fragaria_vesca	FvH4_3g28750
malus_domestica	MD03G1174000.v1.1 MD11G1192200.v1.1
prunus_persica	Prupe.4G250100_v2.0.a1
pyrus_communis	pycom03g13160 pycom11g16800
rosa_chinensis	RchiOBHm_Chr5g0052301
rosa_laevigata	RLG00000034827
rosa_multiflora	Rmu_sc0021240.1_g000003 Rmu_sc0028377.1_g000002
rosa_roxburghii	Rroxscaffold_1G00028130 Rroxscaffold_1G00028140
rosa_rugosa	Rorug05G0273000
rosa_samantha	Rh5AG345900 Rh5BG356600 Rh5CG381900 Rh5DG371800
rosa_wichuraiana	Rw5G032620 Rw5G032660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	532
AccB1I	GGYRCC	1 cut(s)	805
AccBSI	CCGCTC	1 cut(s)	267
AccI	GTMKAC	1 cut(s)	192
AciI	CCGC	3 cut(s)	79, 265, 350
AclWI	GGATC	2 cut(s)	716, 835
AcsI	RAATTY	2 cut(s)	294, 413
AfaI	GTAC	1 cut(s)	519
AfiI	CCNNNNNNNGG	1 cut(s)	202
AgeI	ACCGGT	1 cut(s)	891
AgsI	TTSAA	5 cut(s)	166, 188, 242, 331, 769
AhlI	ACTAGT	1 cut(s)	146
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
Alw26I	GTCTC	2 cut(s)	265, 550
AlwI	GGATC	2 cut(s)	716, 835
Ama87I	CYCGRG	1 cut(s)	268
AoxI	GGCC	3 cut(s)	204, 213, 421
ApeKI	GCWGC	1 cut(s)	178
ApoI	RAATTY	2 cut(s)	294, 413
AsiGI	ACCGGT	1 cut(s)	891
AspA2I	CCTAGG	1 cut(s)	424
AspS9I	GGNCC	1 cut(s)	214
AsuHPI	GGTGA	3 cut(s)	368, 506, 665
AvaI	CYCGRG	1 cut(s)	268
AvrII	CCTAGG	1 cut(s)	424
BanI	GGYRCC	1 cut(s)	805
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	3 cut(s)	353, 531, 650
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	2 cut(s)	265, 550
BcuI	ACTAGT	1 cut(s)	146
BfaI	CTAG	6 cut(s)	65, 147, 425, 579, 588, 729
BfuAI	ACCTGC	1 cut(s)	532
BglI	GCCNNNNNGGC	2 cut(s)	76, 212
BisI	GCNGC	2 cut(s)	80, 179
BlnI	CCTAGG	1 cut(s)	424
BlsI	GCNGC	2 cut(s)	81, 180
BmeT110I	CYCGRG	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	2 cut(s)	616, 807
BsaBI	GATNNNNATC	1 cut(s)	450
BsaI	GGTCTC	2 cut(s)	265, 550
BsaJI	CCNNGG	3 cut(s)	110, 424, 490
BsaWI	WCCGGW	1 cut(s)	891
BsaXI	ACNNNNNCTCC	2 cut(s)	637, 667
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse118I	RCCGGY	1 cut(s)	891
Bse8I	GATNNNNATC	1 cut(s)	450
BseDI	CCNNGG	3 cut(s)	110, 424, 490
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseMII	CTCAG	2 cut(s)	575, 678
BseXI	GCAGC	1 cut(s)	190
BseYI	CCCAGC	1 cut(s)	848
Bsh1285I	CGRYCG	1 cut(s)	892
BshFI	GGCC	3 cut(s)	206, 215, 423
BshNI	GGYRCC	1 cut(s)	805
BshTI	ACCGGT	1 cut(s)	891
BsiEI	CGRYCG	1 cut(s)	892
BsiHKCI	CYCGRG	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	892
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmAI	GTCTC	2 cut(s)	265, 550
BsnI	GGCC	3 cut(s)	206, 215, 423
Bso31I	GGTCTC	2 cut(s)	265, 550
BsoBI	CYCGRG	1 cut(s)	268
Bsp143I	GATC	5 cut(s)	229, 721, 800, 817, 840
Bsp19I	CCATGG	1 cut(s)	110
BspACI	CCGC	3 cut(s)	79, 265, 350
BspANI	GGCC	3 cut(s)	206, 215, 423
BspCNI	CTCAG	2 cut(s)	574, 677
BspLI	GGNNCC	2 cut(s)	616, 807
BspMI	ACCTGC	1 cut(s)	532
BspPI	GGATC	2 cut(s)	716, 835
BspT107I	GGYRCC	1 cut(s)	805
BspTNI	GGTCTC	2 cut(s)	265, 550
BsrBI	CCGCTC	1 cut(s)	267
BsrFI	RCCGGY	1 cut(s)	891
BssAI	RCCGGY	1 cut(s)	891
BssECI	CCNNGG	3 cut(s)	110, 424, 490
BssMI	GATC	5 cut(s)	229, 721, 800, 817, 840
BssT1I	CCWWGG	3 cut(s)	110, 424, 490
Bst4CI	ACNGT	1 cut(s)	26
Bst6I	CTCTTC	1 cut(s)	165
BstC8I	GCNNGC	3 cut(s)	72, 465, 747
BstDEI	CTNAG	4 cut(s)	441, 468, 561, 664
BstDSI	CCRYGG	1 cut(s)	110
BstKTI	GATC	5 cut(s)	232, 724, 803, 820, 843
BstMAI	GTCTC	2 cut(s)	265, 550
BstMBI	GATC	5 cut(s)	229, 721, 800, 817, 840
BstMCI	CGRYCG	1 cut(s)	892
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 212, 854
BstV1I	GCAGC	1 cut(s)	190
BstX2I	RGATCY	1 cut(s)	840
BstYI	RGATCY	1 cut(s)	840
BsuRI	GGCC	3 cut(s)	206, 215, 423
BtgI	CCRYGG	1 cut(s)	110
BtsIMutI	CAGTG	1 cut(s)	31
BveI	ACCTGC	1 cut(s)	532
Cac8I	GCNNGC	3 cut(s)	72, 465, 747
Cfr10I	RCCGGY	1 cut(s)	891
Cfr13I	GGNCC	1 cut(s)	214
Csp6I	GTAC	1 cut(s)	518
CspAI	ACCGGT	1 cut(s)	891
CviAII	CATG	8 cut(s)	75, 83, 111, 557, 594, 687, 776, 787
CviJI	RGCY	9 cut(s)	58, 109, 206, 215, 318, 423, 615, 780, 828
CviKI_1	RGCY	9 cut(s)	58, 109, 206, 215, 318, 423, 615, 780, 828
CviQI	GTAC	1 cut(s)	518
DdeI	CTNAG	4 cut(s)	441, 468, 561, 664
DpnI	GATC	5 cut(s)	231, 723, 802, 819, 842
DpnII	GATC	5 cut(s)	229, 721, 800, 817, 840
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Eco130I	CCWWGG	3 cut(s)	110, 424, 490
Eco31I	GGTCTC	2 cut(s)	265, 550
Eco88I	CYCGRG	1 cut(s)	268
EcoO109I	RGGNCCY	1 cut(s)	214
EcoT14I	CCWWGG	3 cut(s)	110, 424, 490
ErhI	CCWWGG	3 cut(s)	110, 424, 490
FaeI	CATG	8 cut(s)	78, 86, 114, 560, 597, 690, 779, 790
FalI	AAGNNNNNCTT	2 cut(s)	749, 781
FatI	CATG	8 cut(s)	74, 82, 110, 556, 593, 686, 775, 786
FauNDI	CATATG	1 cut(s)	881
FbaI	TGATCA	1 cut(s)	229
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	2 cut(s)	80, 179
Fsp4HI	GCNGC	2 cut(s)	80, 179
FspBI	CTAG	6 cut(s)	65, 147, 425, 579, 588, 729
GluI	GCNGC	2 cut(s)	80, 179
GsaI	CCCAGC	1 cut(s)	852
HaeIII	GGCC	3 cut(s)	206, 215, 423
HapII	CCGG	1 cut(s)	892
Hin1II	CATG	8 cut(s)	78, 86, 114, 560, 597, 690, 779, 790
HinfI	GANTC	2 cut(s)	173, 451
HpaII	CCGG	1 cut(s)	892
HphI	GGTGA	3 cut(s)	368, 506, 665
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	4 cut(s)	139, 721, 822, 871
Hpy188III	TCNNGA	5 cut(s)	49, 227, 270, 766, 812
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	3 cut(s)	160, 196, 735
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4V	TGCA	7 cut(s)	74, 93, 161, 402, 438, 628, 745
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 212, 854
HpyF3I	CTNAG	4 cut(s)	441, 468, 561, 664
Hsp92II	CATG	8 cut(s)	78, 86, 114, 560, 597, 690, 779, 790
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	5 cut(s)	229, 721, 800, 817, 840
LmnI	GCTCC	2 cut(s)	254, 620
Lsp1109I	GCAGC	1 cut(s)	190
MaeI	CTAG	6 cut(s)	65, 147, 425, 579, 588, 729
MaeIII	GTNAC	2 cut(s)	311, 731
MalI	GATC	5 cut(s)	231, 723, 802, 819, 842
MbiI	CCGCTC	1 cut(s)	267
MboI	GATC	5 cut(s)	229, 721, 800, 817, 840
MboII	GAAGA	3 cut(s)	182, 379, 850
MflI	RGATCY	1 cut(s)	840
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	7 cut(s)	18, 21, 54, 205, 593, 819, 887
MseI	TTAA	5 cut(s)	219, 432, 669, 707, 797
MslI	CAYNNNNRTG	1 cut(s)	531
MspI	CCGG	1 cut(s)	892
MwoI	GCNNNNNNNGC	3 cut(s)	76, 212, 854
NcoI	CCATGG	1 cut(s)	110
NdeI	CATATG	1 cut(s)	881
NdeII	GATC	5 cut(s)	229, 721, 800, 817, 840
NlaIII	CATG	8 cut(s)	78, 86, 114, 560, 597, 690, 779, 790
NlaIV	GGNNCC	2 cut(s)	616, 807
NmuCI	GTSAC	1 cut(s)	311
PaeR7I	CTCGAG	1 cut(s)	268
PfeI	GAWTC	1 cut(s)	451
PinAI	ACCGGT	1 cut(s)	891
PkrI	GCNGC	2 cut(s)	81, 180
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
PspFI	CCCAGC	1 cut(s)	848
PspN4I	GGNNCC	2 cut(s)	616, 807
PspPI	GGNCC	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	840
RsaI	GTAC	1 cut(s)	519
RsaNI	GTAC	1 cut(s)	518
RseI	CAYNNNNRTG	1 cut(s)	531
SaqAI	TTAA	5 cut(s)	219, 432, 669, 707, 797
SatI	GCNGC	2 cut(s)	80, 179
Sau3AI	GATC	5 cut(s)	229, 721, 800, 817, 840
Sau96I	GGNCC	1 cut(s)	214
SchI	GAGTC	1 cut(s)	182
SetI	ASST	9 cut(s)	60, 289, 381, 409, 496, 546, 584, 637, 879
SfiI	GGCCNNNNNGGCC	1 cut(s)	212
Sfr274I	CTCGAG	1 cut(s)	268
SlaI	CTCGAG	1 cut(s)	268
SmiMI	CAYNNNNRTG	1 cut(s)	531
SmlI	CTYRAG	1 cut(s)	268
SmoI	CTYRAG	1 cut(s)	268
SpeI	ACTAGT	1 cut(s)	146
SsiI	CCGC	3 cut(s)	79, 265, 350
SspMI	CTAG	6 cut(s)	65, 147, 425, 579, 588, 729
StyI	CCWWGG	3 cut(s)	110, 424, 490
TaaI	ACNGT	1 cut(s)	26
TaqI	TCGA	2 cut(s)	269, 888
TatI	WGTACW	1 cut(s)	517
TauI	GCSGC	1 cut(s)	82
TfiI	GAWTC	1 cut(s)	451
Tru1I	TTAA	5 cut(s)	219, 432, 669, 707, 797
Tru9I	TTAA	5 cut(s)	219, 432, 669, 707, 797
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	1 cut(s)	178
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	3 cut(s)	114, 464, 683
TspRI	CASTG	1 cut(s)	31
XapI	RAATTY	2 cut(s)	294, 413
XhoI	CTCGAG	1 cut(s)	268
XmaJI	CCTAGG	1 cut(s)	424
XmiI	GTMKAC	1 cut(s)	192
XspI	CTAG	6 cut(s)	65, 147, 425, 579, 588, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.