MD11G1215400.v1.1

tetraacyldisaccharide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0003555
Physical Location & Seq
Reverse (-)
31451534 .. 31455100
3567 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1215400.v1.1.491

Sequence Viewer

Length: 1170 bp
ATGGAGAAACTGAGGAAAGCGGTGAGCGAGATCGCCTACACTCAGGACCACACTAAGCTCACTCATCTTCACCGCTCTCTTATCCCTGTCCTCTCCTTCGCCTCCTCTCTCTACAGGCTCGCCCTCTCTCTCCGCCGCTCCTTCTACCACTATGGCCTCTTCACAAAGCACCGGTTACCGGTGCCAGTGATCAGTGTTGGGAATTTGACATGGGGAGGCAACGGGAAAACTCCGATGGTCGAGTTCATTGCGCGGTTTTTAGCTGATTCGGGAATTTCTCCTCTCATTCTTACCAGGGGTTATGCTGGTGGGGATGAAACCAAAATGCTTCGTAGGCATTTGCTTGGAAGGCCTGTGAAGATAGGTGTGGGTGCAAATCGGGCAGCTATTGCTGCTCATTTCTTTGAAAAATATGGTTATGTTGATCCTTACTCTACAAGTAATTACGCTGATGGATTTAACCTAGGGCAGAAAGTGGGGAATCATCCTAGTTCAGAAACAATTGGTGCTGTAGTTCTCGATGACGGAATGCAGCACTGGAGCCTGCAGCGTAATCTGGAGATTCTAATGATTAATGGACTAACACTATGGGGCAACTGTCACTTAATACCACGTGGGCCATTAAGGGAACCCTTGAATGCACTTAGACGGGCAGATGCTGTTGTGCTCCATCATGCAGATTTGGTTTCAGAACAAAGGCTCACAGATATAGACTCCATGCTAAGAGAAGTTAATAAATCTGTTCCAATTTTCTTCACTAAAATGGATCCCTGCTTTTTCTTCAACGTGGGAAATGTCAACTCCAGAAAACCAATTACAGCTTTGTCTAACAGCATTTTATTATGTGTTTCTGCCATTGGTTCTGCAGATGCATTTGTGAAGGGAATGGAGAAGATAGGGGCATTCTATGTTGATCGACTTGAATTCAGCGACCATCACATATTTCAGCCCAAGGATATTGAGATGATGAGGAAGAAACTAAGAGAGCTGGAGGATGCATTTGGTTCCAAGCCAGTCGTTATAGTCACAGAAAAGGATTATGATCGAGACCCGGGGATTTTTGAGCACCTGGATCCTTATGAAATCTTGGCACTCTGTTCTGAATTGAAGATCATACCTCGCGGTGAACGCACTGAAGATAGCTTCAAAAAGCTGTTGAAGGAGATTTGA

Protein Analysis

390

Amino Acids

43.82

Weight (kDa)

8.86

Isoelectric Point (pI)

35.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LpxK PF02606 30 - 378 1.2e-63 Tetraacyldisaccharide-1-P 4'-kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 181
AccBSI CCGCTC 2 cut(s) 75, 138
AccII CGCG 2 cut(s) 253, 1122
AciI CCGC 6 cut(s) 20, 73, 133, 136, 253, 1122
AclWI GGATC 5 cut(s) 419, 761, 774, 1067, 1080
AcsI RAATTY 3 cut(s) 202, 273, 923
AcuI CTGAAG 1 cut(s) 1155
AcvI CACGTG 1 cut(s) 614
AfiI CCNNNNNNNGG 1 cut(s) 178
AgeI ACCGGT 2 cut(s) 171, 178
AgsI TTSAA 7 cut(s) 407, 637, 784, 923, 1108, 1147, 1159
AjnI CCWGG 2 cut(s) 293, 1068
AluBI AGCT 7 cut(s) 58, 263, 386, 821, 988, 1143, 1153
AluI AGCT 7 cut(s) 58, 263, 386, 821, 988, 1143, 1153
Alw21I GWGCWC 2 cut(s) 669, 1068
Alw26I GTCTC 1 cut(s) 1041
AlwI GGATC 5 cut(s) 419, 761, 774, 1067, 1080
AlwNI CAGNNNCTG 1 cut(s) 659
Ama87I CYCGRG 1 cut(s) 1051
AoxI GGCC 3 cut(s) 154, 350, 617
ApeKI GCWGC 4 cut(s) 383, 392, 532, 547
ApoI RAATTY 3 cut(s) 202, 273, 923
AseI ATTAAT 1 cut(s) 573
AsiGI ACCGGT 2 cut(s) 171, 178
AspA2I CCTAGG 1 cut(s) 463
AspLEI GCGC 1 cut(s) 253
AspS9I GGNCC 2 cut(s) 46, 617
AsuC2I CCSGG 2 cut(s) 1052, 1053
AsuHPI GGTGA 3 cut(s) 34, 62, 1136
AvaI CYCGRG 1 cut(s) 1051
AvaII GGWCC 1 cut(s) 46
AvrII CCTAGG 1 cut(s) 463
BamHI GGATCC 2 cut(s) 766, 1072
BanI GGYRCC 1 cut(s) 181
BbrPI CACGTG 1 cut(s) 614
Bbv12I GWGCWC 2 cut(s) 669, 1068
BbvI GCAGC 4 cut(s) 379, 395, 544, 559
BccI CCATC 4 cut(s) 229, 446, 678, 942
BcgI CGANNNNNNTGC 2 cut(s) 230, 264
BciT130I CCWGG 2 cut(s) 295, 1070
BclI TGATCA 1 cut(s) 189
BcnI CCSGG 2 cut(s) 1052, 1053
BcoDI GTCTC 1 cut(s) 1041
BfaI CTAG 2 cut(s) 464, 489
BfmI CTRYAG 4 cut(s) 112, 510, 545, 864
BisI GCNGC 5 cut(s) 136, 384, 393, 533, 548
BlnI CCTAGG 1 cut(s) 463
BlsI GCNGC 5 cut(s) 137, 385, 394, 534, 549
Bme1390I CCNGG 4 cut(s) 295, 1052, 1053, 1070
Bme18I GGWCC 1 cut(s) 46
BmeT110I CYCGRG 1 cut(s) 1051
BmgT120I GGNCC 2 cut(s) 46, 617
BmiI GGNNCC 6 cut(s) 183, 542, 630, 768, 1006, 1074
BmrFI CCNGG 4 cut(s) 295, 1052, 1053, 1070
BmsI GCATC 3 cut(s) 646, 859, 985
BpmI CTGGAG 4 cut(s) 559, 578, 787, 1010
BpuMI CCSGG 2 cut(s) 1052, 1053
BsaAI YACGTR 1 cut(s) 614
BsaBI GATNNNNATC 1 cut(s) 1041
BsaI GGTCTC 1 cut(s) 1041
BsaJI CCNNGG 5 cut(s) 294, 463, 951, 1051, 1052
BsaWI WCCGGW 2 cut(s) 171, 178
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse118I RCCGGY 2 cut(s) 171, 178
Bse1I ACTGG 3 cut(s) 185, 542, 1013
Bse3DI GCAATG 1 cut(s) 246
Bse8I GATNNNNATC 1 cut(s) 1041
BseBI CCWGG 2 cut(s) 295, 1070
BseDI CCNNGG 5 cut(s) 294, 463, 951, 1051, 1052
BseGI GGATG 3 cut(s) 319, 484, 1000
BseJI GATNNNNATC 1 cut(s) 1041
BseLI CCNNNNNNNGG 1 cut(s) 178
BseMI GCAATG 1 cut(s) 246
BseMII CTCAG 1 cut(s) 56
BseNI ACTGG 3 cut(s) 185, 542, 1013
BseRI GAGGAG 2 cut(s) 94, 270
BseXI GCAGC 4 cut(s) 379, 395, 544, 559
Bsh1236I CGCG 2 cut(s) 253, 1122
BshFI GGCC 3 cut(s) 156, 352, 619
BshNI GGYRCC 1 cut(s) 181
BshTI ACCGGT 2 cut(s) 171, 178
BsiHKAI GWGCWC 2 cut(s) 669, 1068
BsiHKCI CYCGRG 1 cut(s) 1051
BsiSI CCGG 3 cut(s) 172, 179, 1052
BslI CCNNNNNNNGG 1 cut(s) 178
BsmAI GTCTC 1 cut(s) 1041
BsmI GAATGC 3 cut(s) 534, 643, 902
BsnI GGCC 3 cut(s) 156, 352, 619
Bso31I GGTCTC 1 cut(s) 1041
BsoBI CYCGRG 1 cut(s) 1051
Bsp1286I GDGCHC 2 cut(s) 669, 1068
Bsp143I GATC 8 cut(s) 30, 189, 424, 766, 913, 1042, 1072, 1110
BspACI CCGC 6 cut(s) 20, 73, 133, 136, 253, 1122
BspANI GGCC 3 cut(s) 156, 352, 619
BspCNI CTCAG 1 cut(s) 55
BspFNI CGCG 2 cut(s) 253, 1122
BspLI GGNNCC 6 cut(s) 183, 542, 630, 768, 1006, 1074
BspMAI CTGCAG 2 cut(s) 549, 868
BspPI GGATC 5 cut(s) 419, 761, 774, 1067, 1080
BspT107I GGYRCC 1 cut(s) 181
BspTNI GGTCTC 1 cut(s) 1041
BsrBI CCGCTC 2 cut(s) 75, 138
BsrDI GCAATG 1 cut(s) 246
BsrFI RCCGGY 2 cut(s) 171, 178
BsrI ACTGG 3 cut(s) 185, 542, 1013
BssAI RCCGGY 2 cut(s) 171, 178
BssECI CCNNGG 5 cut(s) 294, 463, 951, 1051, 1052
BssMI GATC 8 cut(s) 30, 189, 424, 766, 913, 1042, 1072, 1110
BssT1I CCWWGG 2 cut(s) 463, 951
Bst2UI CCWGG 2 cut(s) 295, 1070
Bst4CI ACNGT 1 cut(s) 599
Bst6I CTCTTC 1 cut(s) 164
BstAPI GCANNNNNTGC 1 cut(s) 389
BstBAI YACGTR 1 cut(s) 614
BstC8I GCNNGC 2 cut(s) 120, 545
BstDEI CTNAG 6 cut(s) 11, 42, 54, 644, 722, 980
BstEII GGTNACC 1 cut(s) 174
BstF5I GGATG 3 cut(s) 319, 484, 1000
BstFNI CGCG 2 cut(s) 253, 1122
BstHHI GCGC 1 cut(s) 253
BstKTI GATC 8 cut(s) 33, 192, 427, 769, 916, 1045, 1075, 1113
BstMAI GTCTC 1 cut(s) 1041
BstMBI GATC 8 cut(s) 30, 189, 424, 766, 913, 1042, 1072, 1110
BstMWI GCNNNNNNNGC 6 cut(s) 334, 349, 380, 389, 392, 1128
BstNI CCWGG 2 cut(s) 295, 1070
BstPI GGTNACC 1 cut(s) 174
BstSCI CCNGG 4 cut(s) 293, 1050, 1051, 1068
BstSFI CTRYAG 4 cut(s) 112, 510, 545, 864
BstUI CGCG 2 cut(s) 253, 1122
BstV1I GCAGC 4 cut(s) 379, 395, 544, 559
BstX2I RGATCY 2 cut(s) 766, 1072
BstYI RGATCY 2 cut(s) 766, 1072
BsuRI GGCC 3 cut(s) 156, 352, 619
BtsCI GGATG 3 cut(s) 319, 484, 1000
BtsIMutI CAGTG 4 cut(s) 192, 199, 535, 1131
Cac8I GCNNGC 2 cut(s) 120, 545
CaiI CAGNNNCTG 1 cut(s) 659
CfoI GCGC 1 cut(s) 253
Cfr10I RCCGGY 2 cut(s) 171, 178
Cfr13I GGNCC 2 cut(s) 46, 617
Cfr9I CCCGGG 1 cut(s) 1051
CspAI ACCGGT 2 cut(s) 171, 178
CviAII CATG 3 cut(s) 210, 674, 718
DdeI CTNAG 6 cut(s) 11, 42, 54, 644, 722, 980
DpnI GATC 8 cut(s) 32, 191, 426, 768, 915, 1044, 1074, 1112
DpnII GATC 8 cut(s) 30, 189, 424, 766, 913, 1042, 1072, 1110
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
EciI GGCGGA 1 cut(s) 122
Eco130I CCWWGG 2 cut(s) 463, 951
Eco147I AGGCCT 1 cut(s) 352
Eco31I GGTCTC 1 cut(s) 1041
Eco47I GGWCC 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 1155
Eco72I CACGTG 1 cut(s) 614
Eco88I CYCGRG 1 cut(s) 1051
Eco91I GGTNACC 1 cut(s) 174
EcoO65I GGTNACC 1 cut(s) 174
EcoRI GAATTC 1 cut(s) 923
EcoRII CCWGG 2 cut(s) 293, 1068
EcoT14I CCWWGG 2 cut(s) 463, 951
EcoT22I ATGCAT 2 cut(s) 874, 1000
ErhI CCWWGG 2 cut(s) 463, 951
FaeI CATG 3 cut(s) 213, 677, 721
FatI CATG 3 cut(s) 209, 673, 717
FbaI TGATCA 1 cut(s) 189
Fnu4HI GCNGC 5 cut(s) 136, 384, 393, 533, 548
FokI GGATG 3 cut(s) 326, 471, 1007
Fsp4HI GCNGC 5 cut(s) 136, 384, 393, 533, 548
FspBI CTAG 2 cut(s) 464, 489
GlaI GCGC 1 cut(s) 252
GluI GCNGC 5 cut(s) 136, 384, 393, 533, 548
GsuI CTGGAG 4 cut(s) 559, 578, 787, 1010
HaeIII GGCC 3 cut(s) 156, 352, 619
HapII CCGG 3 cut(s) 172, 179, 1052
HhaI GCGC 1 cut(s) 253
Hin1II CATG 3 cut(s) 213, 677, 721
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HincII GTYRAC 1 cut(s) 799
HindII GTYRAC 1 cut(s) 799
HinfI GANTC 4 cut(s) 266, 481, 562, 713
HpaII CCGG 3 cut(s) 172, 179, 1052
HphI GGTGA 3 cut(s) 34, 62, 1136
Hpy166II GTNNAC 2 cut(s) 799, 1127
Hpy188I TCNGA 4 cut(s) 234, 496, 691, 1102
Hpy188III TCNNGA 6 cut(s) 44, 270, 518, 557, 804, 1046
Hpy8I GTNNAC 2 cut(s) 799, 1127
HpyAV CCTTC 5 cut(s) 106, 151, 342, 874, 1153
HpyCH4III ACNGT 1 cut(s) 599
HpyCH4IV ACGT 2 cut(s) 613, 786
HpyCH4V TGCA 8 cut(s) 374, 532, 547, 641, 677, 866, 872, 998
HpyF10VI GCNNNNNNNGC 6 cut(s) 334, 349, 380, 389, 392, 1128
HpyF3I CTNAG 6 cut(s) 11, 42, 54, 644, 722, 980
HpySE526I ACGT 2 cut(s) 613, 786
Hsp92II CATG 3 cut(s) 213, 677, 721
HspAI GCGC 1 cut(s) 251
Ksp22I TGATCA 1 cut(s) 189
Kzo9I GATC 8 cut(s) 30, 189, 424, 766, 913, 1042, 1072, 1110
LmnI GCTCC 3 cut(s) 143, 540, 672
Lsp1109I GCAGC 4 cut(s) 379, 395, 544, 559
LweI GCATC 3 cut(s) 646, 859, 985
MaeI CTAG 2 cut(s) 464, 489
MaeII ACGT 2 cut(s) 613, 786
MaeIII GTNAC 3 cut(s) 174, 599, 1024
MalI GATC 8 cut(s) 32, 191, 426, 768, 915, 1044, 1074, 1112
MbiI CCGCTC 2 cut(s) 75, 138
MboI GATC 8 cut(s) 30, 189, 424, 766, 913, 1042, 1072, 1110
MboII GAAGA 9 cut(s) 59, 151, 370, 745, 772, 904, 985, 1120, 1148
MfeI CAATTG 1 cut(s) 501
MflI RGATCY 2 cut(s) 766, 1072
MhlI GDGCHC 2 cut(s) 669, 1068
MluCI AATT 8 cut(s) 202, 273, 442, 501, 747, 813, 923, 1103
MlyI GAGTC 1 cut(s) 707
Mph1103I ATGCAT 2 cut(s) 874, 1000
MseI TTAA 5 cut(s) 459, 573, 605, 623, 732
MslI CAYNNNNRTG 1 cut(s) 761
MspI CCGG 3 cut(s) 172, 179, 1052
MspR9I CCNGG 4 cut(s) 295, 1052, 1053, 1070
MunI CAATTG 1 cut(s) 501
Mva1269I GAATGC 3 cut(s) 534, 643, 902
MvaI CCWGG 2 cut(s) 295, 1070
MvnI CGCG 2 cut(s) 253, 1122
MwoI GCNNNNNNNGC 6 cut(s) 334, 349, 380, 389, 392, 1128
NciI CCSGG 2 cut(s) 1052, 1053
NdeII GATC 8 cut(s) 30, 189, 424, 766, 913, 1042, 1072, 1110
NlaIII CATG 3 cut(s) 213, 677, 721
NlaIV GGNNCC 6 cut(s) 183, 542, 630, 768, 1006, 1074
NmuCI GTSAC 2 cut(s) 599, 1024
NsiI ATGCAT 2 cut(s) 874, 1000
PceI AGGCCT 1 cut(s) 352
PctI GAATGC 3 cut(s) 534, 643, 902
PfeI GAWTC 3 cut(s) 266, 481, 562
PinAI ACCGGT 2 cut(s) 171, 178
PkrI GCNGC 5 cut(s) 137, 385, 394, 534, 549
PleI GAGTC 1 cut(s) 707
PmaCI CACGTG 1 cut(s) 614
PmlI CACGTG 1 cut(s) 614
PpsI GAGTC 1 cut(s) 707
Ppu21I YACGTR 1 cut(s) 614
PshBI ATTAAT 1 cut(s) 573
Psp6I CCWGG 2 cut(s) 293, 1068
PspCI CACGTG 1 cut(s) 614
PspEI GGTNACC 1 cut(s) 174
PspGI CCWGG 2 cut(s) 293, 1068
PspN4I GGNNCC 6 cut(s) 183, 542, 630, 768, 1006, 1074
PspPI GGNCC 2 cut(s) 46, 617
PstI CTGCAG 2 cut(s) 549, 868
PstNI CAGNNNCTG 1 cut(s) 659
PsuI RGATCY 2 cut(s) 766, 1072
RseI CAYNNNNRTG 1 cut(s) 761
SaqAI TTAA 5 cut(s) 459, 573, 605, 623, 732
SatI GCNGC 5 cut(s) 136, 384, 393, 533, 548
Sau3AI GATC 8 cut(s) 30, 189, 424, 766, 913, 1042, 1072, 1110
Sau96I GGNCC 2 cut(s) 46, 617
SchI GAGTC 1 cut(s) 707
ScrFI CCNGG 4 cut(s) 295, 1052, 1053, 1070
SduI GDGCHC 2 cut(s) 669, 1068
SfaNI GCATC 3 cut(s) 646, 859, 985
SfcI CTRYAG 4 cut(s) 112, 510, 545, 864
SinI GGWCC 1 cut(s) 46
SmaI CCCGGG 1 cut(s) 1053
SmiMI CAYNNNNRTG 1 cut(s) 761
Sse9I AATT 8 cut(s) 202, 273, 442, 501, 747, 813, 923, 1103
SseBI AGGCCT 1 cut(s) 352
SsiI CCGC 6 cut(s) 20, 73, 133, 136, 253, 1122
SspMI CTAG 2 cut(s) 464, 489
StuI AGGCCT 1 cut(s) 352
StyD4I CCNGG 4 cut(s) 293, 1050, 1051, 1068
StyI CCWWGG 2 cut(s) 463, 951
TaaI ACNGT 1 cut(s) 599
TaiI ACGT 2 cut(s) 616, 789
TaqI TCGA 4 cut(s) 240, 519, 916, 1045
TasI AATT 8 cut(s) 202, 273, 442, 501, 747, 813, 923, 1103
TauI GCSGC 1 cut(s) 138
TfiI GAWTC 3 cut(s) 266, 481, 562
Tru1I TTAA 5 cut(s) 459, 573, 605, 623, 732
Tru9I TTAA 5 cut(s) 459, 573, 605, 623, 732
TscAI CASTG 4 cut(s) 192, 199, 542, 1138
TseFI GTSAC 2 cut(s) 599, 1024
TseI GCWGC 4 cut(s) 383, 392, 532, 547
Tsp45I GTSAC 2 cut(s) 599, 1024
TspDTI ATGAA 3 cut(s) 235, 330, 1095
TspGWI ACGGA 1 cut(s) 540
TspMI CCCGGG 1 cut(s) 1051
TspRI CASTG 4 cut(s) 192, 199, 542, 1138
VpaK11BI GGWCC 1 cut(s) 46
VspI ATTAAT 1 cut(s) 573
XapI RAATTY 3 cut(s) 202, 273, 923
XmaI CCCGGG 1 cut(s) 1051
XmaJI CCTAGG 1 cut(s) 463
XspI CTAG 2 cut(s) 464, 489
Zsp2I ATGCAT 2 cut(s) 874, 1000
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.