Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8438333.1

Orthogroup ID

OG0003555

Physical Location & Seq

Genomic Coordinates Forward (+)

716 .. 1563

Gene Structure 848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8438333.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 494 bp

atggagaaactgagaaaagccgtgaatgaaatggcgtatactcaacaccacgctaagctctctcatcttcaactctctctaatccccgtcctctccttggcctcatctctctacaaggccgctctctccctccgccgcgctctctaccattccggcctcttaagacagcaccggttgccggtgccggtgatcagtgttggcaatttgacatggggaggcaatgggaaaactccaatggtggagttcattgcgaactatttagctgattcagggatttcacctctcattctgaccaggggttatgctggtggggatgaggccaagatgcttcataggcatttccttggaaggcctgttaagatcggtgtgggtgcaaagcgagcagctgttgctgctagttttttcgaaagatatggttacgttgaacctagctctagtaaactctgccatggtcagaaagtggggagtcatcttagttcagaaaagattggcac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009029 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

LpxK

Protein Analysis

165

Amino Acids

17.96

Weight (kDa)

10.09

Isoelectric Point (pI)

36.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20480 AT3G20480 AT3G20480 AT3G20480 AT3G20480
fragaria_vesca	FvH4_3g19730 FvH4_3g19730 FvH4_3g19730 FvH4_3g19730 FvH4_3g19730 FvH4_3g19730 FvH4_3g19730 FvH4_3g19730 FvH4_3g19730
malus_domestica	MD11G1215400.v1.1
prunus_persica	Prupe.4G215900_v2.0.a1 Prupe.4G215900_v2.0.a1 Prupe.4G215900_v2.0.a1 Prupe.4G215900_v2.0.a1 Prupe.4G215900_v2.0.a1 Prupe.4G215900_v2.0.a1 Prupe.4G215900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0033071
rosa_laevigata	RLG00000033446
rosa_multiflora	Rmu_co8438333.1_g000001 Rmu_sc0012010.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046870 Rroxscaffold_1G00046980
rosa_rugosa	Rorug05G0135900 Rorug05G0136000
rosa_samantha	Rh5AG228300 Rh5BG229500 Rh5CG257300 Rh5DG234300
rosa_wichuraiana	Rw5G020890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	181
AccBSI	CCGCTC	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	38
AccII	CGCG	1 cut(s)	138
AciI	CCGC	3 cut(s)	120, 133, 136
AfiI	CCNNNNNNNGG	2 cut(s)	97, 178
AflII	CTTAAG	1 cut(s)	160
AgeI	ACCGGT	1 cut(s)	171
AgsI	TTSAA	2 cut(s)	71, 425
AjnI	CCWGG	1 cut(s)	293
AluBI	AGCT	4 cut(s)	58, 263, 386, 432
AluI	AGCT	4 cut(s)	58, 263, 386, 432
AoxI	GGCC	5 cut(s)	99, 117, 154, 318, 350
ApeKI	GCWGC	2 cut(s)	383, 392
AsiGI	ACCGGT	1 cut(s)	171
AspLEI	GCGC	1 cut(s)	140
AsuHPI	GGTGA	2 cut(s)	199, 270
AsuII	TTCGAA	1 cut(s)	405
BanI	GGYRCC	1 cut(s)	181
BbvI	GCAGC	2 cut(s)	379, 395
BceAI	ACGGC	1 cut(s)	5
BciT130I	CCWGG	1 cut(s)	295
BclI	TGATCA	1 cut(s)	189
BfaI	CTAG	3 cut(s)	396, 429, 435
BfrI	CTTAAG	1 cut(s)	160
BisI	GCNGC	4 cut(s)	120, 136, 384, 393
BlpI	GCTNAGC	1 cut(s)	54
BlsI	GCNGC	4 cut(s)	121, 137, 385, 394
Bme1390I	CCNGG	1 cut(s)	295
BmiI	GGNNCC	1 cut(s)	183
BmrFI	CCNGG	1 cut(s)	295
BmsI	GCATC	1 cut(s)	315
Bpu1102I	GCTNAGC	1 cut(s)	54
Bpu14I	TTCGAA	1 cut(s)	405
BsaJI	CCNNGG	4 cut(s)	96, 294, 343, 448
BsaWI	WCCGGW	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 178
Bse118I	RCCGGY	3 cut(s)	171, 178, 184
Bse3DI	GCAATG	2 cut(s)	226, 246
BseBI	CCWGG	1 cut(s)	295
BseDI	CCNNGG	4 cut(s)	96, 294, 343, 448
BseGI	GGATG	1 cut(s)	319
BseLI	CCNNNNNNNGG	2 cut(s)	97, 178
BseMI	GCAATG	2 cut(s)	226, 246
BseXI	GCAGC	2 cut(s)	379, 395
Bsh1236I	CGCG	1 cut(s)	138
BshFI	GGCC	5 cut(s)	101, 119, 156, 320, 352
BshNI	GGYRCC	1 cut(s)	181
BshTI	ACCGGT	1 cut(s)	171
BsiSI	CCGG	4 cut(s)	153, 172, 179, 185
BslI	CCNNNNNNNGG	2 cut(s)	97, 178
BsnI	GGCC	5 cut(s)	101, 119, 156, 320, 352
Bsp119I	TTCGAA	1 cut(s)	405
Bsp143I	GATC	2 cut(s)	189, 360
Bsp1720I	GCTNAGC	1 cut(s)	54
Bsp19I	CCATGG	1 cut(s)	448
BspACI	CCGC	3 cut(s)	120, 133, 136
BspANI	GGCC	5 cut(s)	101, 119, 156, 320, 352
BspFNI	CGCG	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	183
BspT104I	TTCGAA	1 cut(s)	405
BspT107I	GGYRCC	1 cut(s)	181
BspTI	CTTAAG	1 cut(s)	160
BsrBI	CCGCTC	1 cut(s)	122
BsrDI	GCAATG	2 cut(s)	226, 246
BsrFI	RCCGGY	3 cut(s)	171, 178, 184
BssAI	RCCGGY	3 cut(s)	171, 178, 184
BssECI	CCNNGG	4 cut(s)	96, 294, 343, 448
BssMI	GATC	2 cut(s)	189, 360
BssNAI	GTATAC	1 cut(s)	39
BssT1I	CCWWGG	3 cut(s)	96, 343, 448
Bst1107I	GTATAC	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	295
BstAFI	CTTAAG	1 cut(s)	160
BstAPI	GCANNNNNTGC	2 cut(s)	175, 389
BstBI	TTCGAA	1 cut(s)	405
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	3 cut(s)	11, 54, 473
BstDSI	CCRYGG	1 cut(s)	448
BstF5I	GGATG	1 cut(s)	319
BstFNI	CGCG	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	2 cut(s)	192, 363
BstMBI	GATC	2 cut(s)	189, 360
BstMWI	GCNNNNNNNGC	5 cut(s)	175, 334, 380, 389, 392
BstNI	CCWGG	1 cut(s)	295
BstSCI	CCNGG	1 cut(s)	293
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	379, 395
BstZ17I	GTATAC	1 cut(s)	39
BsuRI	GGCC	5 cut(s)	101, 119, 156, 320, 352
BtgI	CCRYGG	1 cut(s)	448
BtsCI	GGATG	1 cut(s)	319
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	381
CfoI	GCGC	1 cut(s)	140
Cfr10I	RCCGGY	3 cut(s)	171, 178, 184
CspAI	ACCGGT	1 cut(s)	171
CviAII	CATG	2 cut(s)	210, 449
DdeI	CTNAG	3 cut(s)	11, 54, 473
DpnI	GATC	2 cut(s)	191, 362
DpnII	GATC	2 cut(s)	189, 360
EciI	GGCGGA	1 cut(s)	122
Eco130I	CCWWGG	3 cut(s)	96, 343, 448
Eco147I	AGGCCT	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	293
EcoT14I	CCWWGG	3 cut(s)	96, 343, 448
ErhI	CCWWGG	3 cut(s)	96, 343, 448
FaeI	CATG	2 cut(s)	213, 452
FaiI	YATR	6 cut(s)	39, 211, 303, 333, 414, 450
FatI	CATG	2 cut(s)	209, 448
FbaI	TGATCA	1 cut(s)	189
FblI	GTMKAC	1 cut(s)	38
Fnu4HI	GCNGC	4 cut(s)	120, 136, 384, 393
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	4 cut(s)	120, 136, 384, 393
FspBI	CTAG	3 cut(s)	396, 429, 435
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	4 cut(s)	120, 136, 384, 393
HaeIII	GGCC	5 cut(s)	101, 119, 156, 320, 352
HapII	CCGG	4 cut(s)	153, 172, 179, 185
HhaI	GCGC	1 cut(s)	140
Hin1II	CATG	2 cut(s)	213, 452
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HinfI	GANTC	2 cut(s)	266, 466
HpaII	CCGG	4 cut(s)	153, 172, 179, 185
HphI	GGTGA	2 cut(s)	199, 270
Hpy166II	GTNNAC	2 cut(s)	39, 440
Hpy188I	TCNGA	3 cut(s)	291, 456, 481
Hpy8I	GTNNAC	2 cut(s)	39, 440
HpyAV	CCTTC	1 cut(s)	342
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	1 cut(s)	374
HpyF10VI	GCNNNNNNNGC	5 cut(s)	175, 334, 380, 389, 392
HpyF3I	CTNAG	3 cut(s)	11, 54, 473
HpySE526I	ACGT	1 cut(s)	420
Hsp92II	CATG	2 cut(s)	213, 452
HspAI	GCGC	1 cut(s)	138
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	2 cut(s)	189, 360
LpnPI	CCDG	9 cut(s)	166, 185, 192, 198, 255, 280, 291, 307, 366
Lsp1109I	GCAGC	2 cut(s)	379, 395
LweI	GCATC	1 cut(s)	315
MaeI	CTAG	3 cut(s)	396, 429, 435
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	2 cut(s)	191, 362
MbiI	CCGCTC	1 cut(s)	122
MboI	GATC	2 cut(s)	189, 360
MboII	GAAGA	1 cut(s)	59
MluCI	AATT	1 cut(s)	202
MlyI	GAGTC	1 cut(s)	475
MnlI	CCTC	7 cut(s)	101, 112, 140, 167, 209, 291, 310
MseI	TTAA	2 cut(s)	161, 357
MspA1I	CMGCKG	1 cut(s)	386
MspCI	CTTAAG	1 cut(s)	160
MspI	CCGG	4 cut(s)	153, 172, 179, 185
MspR9I	CCNGG	1 cut(s)	295
MvaI	CCWGG	1 cut(s)	295
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	5 cut(s)	175, 334, 380, 389, 392
NcoI	CCATGG	1 cut(s)	448
NdeII	GATC	2 cut(s)	189, 360
NlaIII	CATG	2 cut(s)	213, 452
NlaIV	GGNNCC	1 cut(s)	183
NspV	TTCGAA	1 cut(s)	405
PceI	AGGCCT	1 cut(s)	352
PfeI	GAWTC	1 cut(s)	266
PinAI	ACCGGT	1 cut(s)	171
PkrI	GCNGC	4 cut(s)	121, 137, 385, 394
PleI	GAGTC	1 cut(s)	474
PpsI	GAGTC	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	293
PspN4I	GGNNCC	1 cut(s)	183
PvuII	CAGCTG	1 cut(s)	386
SaqAI	TTAA	2 cut(s)	161, 357
SatI	GCNGC	4 cut(s)	120, 136, 384, 393
Sau3AI	GATC	2 cut(s)	189, 360
SchI	GAGTC	1 cut(s)	475
ScrFI	CCNGG	1 cut(s)	295
SetI	ASST	7 cut(s)	60, 265, 283, 388, 423, 430, 434
SfaNI	GCATC	1 cut(s)	315
SfuI	TTCGAA	1 cut(s)	405
SmlI	CTYRAG	1 cut(s)	160
SmoI	CTYRAG	1 cut(s)	160
Sse9I	AATT	1 cut(s)	202
SseBI	AGGCCT	1 cut(s)	352
SsiI	CCGC	3 cut(s)	120, 133, 136
SspMI	CTAG	3 cut(s)	396, 429, 435
StuI	AGGCCT	1 cut(s)	352
StyD4I	CCNGG	1 cut(s)	293
StyI	CCWWGG	3 cut(s)	96, 343, 448
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	1 cut(s)	405
TasI	AATT	1 cut(s)	202
TauI	GCSGC	2 cut(s)	122, 138
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	2 cut(s)	161, 357
Tru9I	TTAA	2 cut(s)	161, 357
TscAI	CASTG	1 cut(s)	199
TseI	GCWGC	2 cut(s)	383, 392
TspDTI	ATGAA	3 cut(s)	42, 235, 320
TspRI	CASTG	1 cut(s)	199
Vha464I	CTTAAG	1 cut(s)	160
XmiI	GTMKAC	1 cut(s)	38
XspI	CTAG	3 cut(s)	396, 429, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.