Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003555

Physical Location & Seq

Genomic Coordinates Forward (+)

12257922 .. 12260684

Gene Structure 2763 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0135900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2763 bp

ATGGCTACTATGGCCTTATCTGCAACGGACGTCTTAATTGGAAAACTTCTGATAATTCTTGAGAACGAAGGAACAACCATAGCCAGTGTTCGTGATGAAGTTGAAAAGATTAAGGAGGAGCTTCTAAGCATGAAAGCTTTCCTGGTGGATGTGGAGGCAAACAAAGCAAAAACTGAAGGAGAGAAATTGTGGGTTGCAAGCATCAGAGACTTGGCCTATGAAGTTGAAGATATCATTGATGAATTCATGTATCACATGTATGAGAAGCAAAGTGGGGGTCGACTTTCAAGGGGGCTGCACAAAACCATTGGCGCTCCAAGTCATCTTTGGTTCAGGCATAAAATTGCAAAGAAGTTGAAGAAAATTACTGAAATGATCAAAGCCATTCCAGAGAGGAATCAAAGGTACGGTGTTGGCCATGTAGGAGGAGCAACTACATCCGAAGATATTCACAAATTGGTGCAGAACCAAGCGGAGTCCTCCATTTTCATTATGGAAGACGAACTGGTAGGGATTGAAGGCAAGAAGCAAATAATAATGGGATGGCTCATGGATGAGGAGCAACACCAAACTGTTATGTCTGTGGTTGGCATGGGAGGTTCTGGAAAGACAACTCTAGTTGCCAAGACCTTCAACAATGAAAAGGTGAAGAGACATTTCGATTGTTATGCATGGATTACCATTTCTCAAACTTATGATGTGGTACACTTGTTTCGAAGCTTGATTAGGGAACTCTACAAATCAAGGAAGGAAGAGTACTCTGCAAATTTGAATGCCATGAGTCGCATAGAATTGCTAGAGTTACTAATTAACTACTTGGAGTCCAAAAGATACCTGGTTGTTCTAGATGATGTGTGGGATATAAAAGCTTGGAGAGAAATTAAAGTATCACTTCAAGATAGGCAACTCGGAAGTCGAATCATAGTTACAACTCGAAAAGAAGATGTAGCATGCAATTCTTTTGGAGTTAAAAGCCATGTTCACCATATTCAACCCCTGCTAAAGAATGAGGCTTGGGAGCTCTTCAGCAAGAAAGCATTCTCAACTAATCAGCATAAAACTTGTCCTACTGAGCTTGAATCATTAGCTTGCCAACTTGTGGAAAAGTGTGAAGGCCTTCCTTTGGCTATTGTGTCTTTAGGTGGTCTTATGTCTTCTAAGAAGTCACTGGATCAATGGGACAAAGTCCTCAACAGCTTCAATTGGCATCTACATAAAAATTCATTGCTAGACCCTGTTAAAAATATCTTGTTGCTGAGTTTCAATGATTTGCCATCTCAATTGAAACATTGCTTCCTCTATTGCTCTCTATTCCCAGAAGATTTTGTAATTAAAAGAAAAAGGCTCACTAGATTGTGGATAGCCGAAGGATTTGTTGAACATGTTAAAGGGGTCACACCAGAAGAAGTTGCAGATGACAATCTTATGGAGCTCTGTTTCCGTAGCGTGTTACAAGTTGTAAAGAGAAATGGTACAGGAAGGCCGAAACAAGTTAAGATGCATGATCTGATGCGAGAGCTTGCTTTGTCGACAACTGAGAAGGAAAAGTTTGGTCTTGTATACGATGGGAGAGAAGTAATGGAAGACATCTCAACCCGTCGCTTGTCAATTCACAAAATGGAAGGAGAAATTAAATCATGGCCGGGTATGTCAAAGATTCGTTCTCTTCTTGTATTTGCCACTAACATGTCCTCATTGTCTTTCTCAAATGCACTGGTTTCTCAATTCAAATTGTTGAGGACTCTAGACTTGGAGGATGTCCAAATTGATAAACTGCCAGATGCAGTTGTTTACTTGTTCAACTTGAGATATTTAAATTTGAGGAACACTTTAATCAAGGAACTTCCCGAGTCCATAGGGCGTCTCCGCAACCTTCAATTTCTGAATATCAAGGATGCTAAGATAGCGTCACTTCCACAAGGAATTGCAAAGTTGTTGAACCTGCGCCATCTAATTATGTATCGCTACACTGGAAAGTTTCTGGACTTCAAATATGTGAGTGGGATAAAAGTGCCATCGAATGTTTGTAAGTTGCAGAAATTGCAAAGCTTATCTATGATTGAATCAGAAGGGGACACTAGTAGACTTATCGGCAACATGACTCAACTTAAGAGCATCGGCATATCAAATGTGAAAGAAAAAGATGAGATTGACCTTTGGGTCTCAATTGAAAAGTTGAATCTGCTTCAATCTATGGTTTTAATGGCAAGTGATGAAGAGGAAATCCTTCCGGTGAAAGCAGAATGTCCACCTCTTCCGCGCCTTCGAGCACTTTATTTGATTGGCAGGCTGCAAAACGTATTACCTTGGTTTTCTTCACTACAAAGTCTCGTACATCTGTGTCTGCGTTGGTCTAGACTTGAAGAGGATTTACTACCTCAAATTGAAGCACTGCCCAATCTGACAAGGCTTGATCTTTGGAATGCATATGTTGGGGAAGAGTTGTGTTTCCACAAAGGCTTTGTAAAGTTGGAGAGGTTGGAGTTGTTCAATTTTTCCTCGTTGAAAAAGGCAAGTATAGAAAAAGGGGTGATGCCAAATCTCCGGTACTTATCGGTTAAAAATTGCATGGAGCTAAAGACAGTGCCACTAGGACTTGAATACCTGTCTAATCTACAATCTTTGGATTTGGTATTTGTTCCCATTGATGTTATACAGCCCATTCGGAAAGGAGGTGAGGATCGCTCTAAAGTACAACACATTCCTGAGATCATACATGTTTTTGAACAATCATCCAAGCTGGTCCACGAAAACTTGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009029 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

LpxK

Protein Analysis

920

Amino Acids

105.4

Weight (kDa)

8.41

Isoelectric Point (pI)

50.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	11 - 93	7.5e-22	Rx N-terminal domain
NB-ARC	PF00931	174 - 350	1.6e-48	NB-ARC domain
WHD_DRP	PF23559	437 - 508	5.2e-19	Disease resistance protein Winged helix domain
LRR_14	PF23598	552 - 877	2.1e-41	Leucine-rich repeat region
LRR_8	PF13855	579 - 631	3.1e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20480 AT3G20480 AT3G20480 AT3G20480 AT3G20480
fragaria_vesca	FvH4_3g19730 FvH4_3g19730 FvH4_3g19730 FvH4_3g19730 FvH4_3g19730 FvH4_3g19730 FvH4_3g19730 FvH4_3g19730 FvH4_3g19730
malus_domestica	MD11G1215400.v1.1
prunus_persica	Prupe.4G215900_v2.0.a1 Prupe.4G215900_v2.0.a1 Prupe.4G215900_v2.0.a1 Prupe.4G215900_v2.0.a1 Prupe.4G215900_v2.0.a1 Prupe.4G215900_v2.0.a1 Prupe.4G215900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0033071
rosa_laevigata	RLG00000033446
rosa_multiflora	Rmu_co8438333.1_g000001 Rmu_sc0012010.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046870 Rroxscaffold_1G00046980
rosa_rugosa	Rorug05G0135900 Rorug05G0136000
rosa_samantha	Rh5AG228300 Rh5BG229500 Rh5CG257300 Rh5DG234300
rosa_wichuraiana	Rw5G020890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2159
AatII	GACGTC	1 cut(s)	33
Acc36I	ACCTGC	1 cut(s)	1950
AccB7I	CCANNNNNTGG	1 cut(s)	1099
AccI	GTMKAC	4 cut(s)	280, 1529, 1560, 2083
AccII	CGCG	1 cut(s)	2260
AciI	CCGC	3 cut(s)	473, 1867, 2258
AclWI	GGATC	2 cut(s)	1179, 2688
AcoI	YGGCCR	2 cut(s)	415, 1640
AcsI	RAATTY	4 cut(s)	242, 766, 1219, 1816
AcuI	CTGAAG	2 cut(s)	195, 1009
AcyI	GRCGYC	2 cut(s)	30, 1861
AfaI	GTAC	7 cut(s)	407, 705, 758, 1474, 2334, 2549, 2694
AfiI	CCNNNNNNNGG	2 cut(s)	1099, 1123
AflII	CTTAAG	1 cut(s)	2108
AflIII	ACRYGT	4 cut(s)	255, 1381, 1686, 2716
AhlI	ACTAGT	1 cut(s)	2078
AjnI	CCWGG	2 cut(s)	141, 834
Alw21I	GWGCWC	3 cut(s)	1023, 1434, 2272
Alw26I	GTCTC	5 cut(s)	201, 646, 1868, 2167, 2333
AlwI	GGATC	2 cut(s)	1179, 2688
Ama87I	CYCGRG	1 cut(s)	1847
AoxI	GGCC	7 cut(s)	12, 213, 415, 1114, 1481, 1640, 2757
ApeKI	GCWGC	2 cut(s)	295, 2290
ApoI	RAATTY	4 cut(s)	242, 766, 1219, 1816
ArsI	GACNNNNNNTTYG	2 cut(s)	262, 294
Asp700I	GAANNNNTTC	5 cut(s)	137, 447, 1037, 1116, 2226
AspLEI	GCGC	3 cut(s)	314, 1947, 2262
AspS9I	GGNCC	1 cut(s)	2743
AsuC2I	CCSGG	1 cut(s)	1644
AsuHPI	GGTGA	5 cut(s)	658, 974, 2245, 2542, 2687
AsuII	TTCGAA	1 cut(s)	715
AvaI	CYCGRG	1 cut(s)	1847
AvaII	GGWCC	1 cut(s)	2743
BaeI	ACNNNNGTAYC	2 cut(s)	695, 728
BalI	TGGCCA	1 cut(s)	417
BanII	GRGCYC	2 cut(s)	1023, 1434
BarI	GAAGNNNNNNTAC	4 cut(s)	740, 772, 2355, 2387
BbsI	GAAGAC	3 cut(s)	504, 1146, 1590
Bbv12I	GWGCWC	3 cut(s)	1023, 1434, 2272
BbvI	GCAGC	2 cut(s)	282, 2277
BccI	CCATC	5 cut(s)	537, 1282, 1559, 1956, 2023
BcgI	CGANNNNNNTGC	2 cut(s)	650, 684
BciT130I	CCWGG	2 cut(s)	143, 836
BclI	TGATCA	1 cut(s)	375
BcnI	CCSGG	1 cut(s)	1644
BcoDI	GTCTC	5 cut(s)	201, 646, 1868, 2167, 2333
BcuI	ACTAGT	1 cut(s)	2078
BfoI	RGCGCY	1 cut(s)	315
BfrI	CTTAAG	1 cut(s)	2108
BfuAI	ACCTGC	1 cut(s)	1950
BisI	GCNGC	2 cut(s)	296, 2291
BlsI	GCNGC	2 cut(s)	297, 2292
BmcAI	AGTACT	1 cut(s)	758
Bme1390I	CCNGG	3 cut(s)	143, 836, 1644
Bme18I	GGWCC	1 cut(s)	2743
BmeT110I	CYCGRG	1 cut(s)	1847
BmgT120I	GGNCC	1 cut(s)	2743
BmrFI	CCNGG	3 cut(s)	143, 836, 1644
BmsI	GCATC	8 cut(s)	210, 1216, 1488, 1500, 1771, 1885, 2124, 2523
BpiI	GAAGAC	3 cut(s)	504, 1146, 1590
BplI	GAGNNNNNCTC	2 cut(s)	2669, 2701
Bpu14I	TTCGAA	1 cut(s)	715
BpuEI	CTTGAG	2 cut(s)	80, 1825
BpuMI	CCSGG	1 cut(s)	1644
BsaBI	GATNNNNATC	1 cut(s)	1419
BsaHI	GRCGYC	2 cut(s)	30, 1861
BsaI	GGTCTC	1 cut(s)	2167
BsaJI	CCNNGG	1 cut(s)	2306
BsaWI	WCCGGW	2 cut(s)	2230, 2544
Bsc4I	CCNNNNNNNGG	2 cut(s)	1099, 1123
Bse1I	ACTGG	5 cut(s)	84, 510, 1173, 1719, 1975
Bse3DI	GCAATG	2 cut(s)	1223, 1288
Bse8I	GATNNNNATC	1 cut(s)	1419
BseBI	CCWGG	2 cut(s)	143, 836
BseDI	CCNNGG	1 cut(s)	2306
BseGI	GGATG	7 cut(s)	154, 437, 548, 559, 1762, 1900, 2732
BseJI	GATNNNNATC	1 cut(s)	1419
BseLI	CCNNNNNNNGG	2 cut(s)	1099, 1123
BseMI	GCAATG	2 cut(s)	1223, 1288
BseMII	CTCAG	4 cut(s)	1062, 1247, 1527, 2697
BseNI	ACTGG	5 cut(s)	84, 510, 1173, 1719, 1975
BseRI	GAGGAG	3 cut(s)	131, 441, 572
BseXI	GCAGC	2 cut(s)	282, 2277
BsgI	GTGCAG	2 cut(s)	281, 482
Bsh1236I	CGCG	1 cut(s)	2260
BshFI	GGCC	7 cut(s)	14, 215, 417, 1116, 1483, 1642, 2759
BsiHKAI	GWGCWC	3 cut(s)	1023, 1434, 2272
BsiHKCI	CYCGRG	1 cut(s)	1847
BsiSI	CCGG	3 cut(s)	1643, 2231, 2545
BslFI	GGGAC	2 cut(s)	1193, 2087
BslI	CCNNNNNNNGG	2 cut(s)	1099, 1123
BsmAI	GTCTC	5 cut(s)	201, 646, 1868, 2167, 2333
BsmBI	CGTCTC	1 cut(s)	1868
BsmFI	GGGAC	2 cut(s)	1193, 2087
BsmI	GAATGC	3 cut(s)	778, 1037, 2428
BsnI	GGCC	7 cut(s)	14, 215, 417, 1116, 1483, 1642, 2759
Bso31I	GGTCTC	1 cut(s)	2167
BsoBI	CYCGRG	1 cut(s)	1847
Bsp119I	TTCGAA	1 cut(s)	715
Bsp1286I	GDGCHC	3 cut(s)	1023, 1434, 2272
Bsp143I	GATC	6 cut(s)	375, 1171, 1504, 2413, 2680, 2709
BspACI	CCGC	3 cut(s)	473, 1867, 2258
BspANI	GGCC	7 cut(s)	14, 215, 417, 1116, 1483, 1642, 2759
BspCNI	CTCAG	4 cut(s)	1063, 1248, 1528, 2698
BspFNI	CGCG	1 cut(s)	2260
BspMI	ACCTGC	1 cut(s)	1950
BspPI	GGATC	2 cut(s)	1179, 2688
BspQI	GCTCTTC	1 cut(s)	1028
BspT104I	TTCGAA	1 cut(s)	715
BspTI	CTTAAG	1 cut(s)	2108
BspTNI	GGTCTC	1 cut(s)	2167
BsrDI	GCAATG	2 cut(s)	1223, 1288
BsrI	ACTGG	5 cut(s)	84, 510, 1173, 1719, 1975
BssECI	CCNNGG	1 cut(s)	2306
BssMI	GATC	6 cut(s)	375, 1171, 1504, 2413, 2680, 2709
BssNAI	GTATAC	1 cut(s)	1561
BssNI	GRCGYC	2 cut(s)	30, 1861
BssT1I	CCWWGG	1 cut(s)	2306
Bst1107I	GTATAC	1 cut(s)	1561
Bst2UI	CCWGG	2 cut(s)	143, 836
Bst4CI	ACNGT	3 cut(s)	410, 574, 2584
Bst6I	CTCTTC	8 cut(s)	644, 747, 1028, 1671, 2211, 2259, 2358, 2433
BstACI	GRCGYC	2 cut(s)	30, 1861
BstAFI	CTTAAG	1 cut(s)	2108
BstAPI	GCANNNNNTGC	1 cut(s)	2041
BstBI	TTCGAA	1 cut(s)	715
BstC8I	GCNNGC	5 cut(s)	199, 952, 1090, 1521, 2288
BstDEI	CTNAG	7 cut(s)	125, 1071, 1158, 1256, 1536, 1899, 2706
BstF5I	GGATG	7 cut(s)	154, 437, 548, 559, 1762, 1900, 2732
BstFNI	CGCG	1 cut(s)	2260
BstH2I	RGCGCY	1 cut(s)	315
BstHHI	GCGC	3 cut(s)	314, 1947, 2262
BstKTI	GATC	6 cut(s)	378, 1174, 1507, 2416, 2683, 2712
BstMAI	GTCTC	5 cut(s)	201, 646, 1868, 2167, 2333
BstMBI	GATC	6 cut(s)	375, 1171, 1504, 2413, 2680, 2709
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 20, 164, 1904, 2041
BstNI	CCWGG	2 cut(s)	143, 836
BstNSI	RCATGY	5 cut(s)	259, 954, 1385, 1690, 2720
BstSCI	CCNGG	3 cut(s)	141, 834, 1642
BstUI	CGCG	1 cut(s)	2260
BstV1I	GCAGC	2 cut(s)	282, 2277
BstV2I	GAAGAC	3 cut(s)	504, 1146, 1590
BstZ17I	GTATAC	1 cut(s)	1561
BsuRI	GGCC	7 cut(s)	14, 215, 417, 1116, 1483, 1642, 2759
BtsCI	GGATG	7 cut(s)	154, 437, 548, 559, 1762, 1900, 2732
BtsI	GCAGTG	1 cut(s)	2390
BtsIMutI	CAGTG	6 cut(s)	91, 1166, 1712, 1968, 2390, 2589
BveI	ACCTGC	1 cut(s)	1950
Cac8I	GCNNGC	5 cut(s)	199, 952, 1090, 1521, 2288
CfoI	GCGC	3 cut(s)	314, 1947, 2262
Cfr13I	GGNCC	1 cut(s)	2743
CseI	GACGC	2 cut(s)	1850, 1896
CsiI	ACCWGGT	1 cut(s)	834
Csp6I	GTAC	7 cut(s)	406, 704, 757, 1473, 2333, 2548, 2693
CviQI	GTAC	7 cut(s)	406, 704, 757, 1473, 2333, 2548, 2693
DdeI	CTNAG	7 cut(s)	125, 1071, 1158, 1256, 1536, 1899, 2706
DpnI	GATC	6 cut(s)	377, 1173, 1506, 2415, 2682, 2711
DpnII	GATC	6 cut(s)	375, 1171, 1504, 2413, 2680, 2709
DraI	TTTAAA	1 cut(s)	1815
DrdI	GACNNNNNNGTC	1 cut(s)	2159
DseDI	GACNNNNNNGTC	1 cut(s)	2159
EaeI	YGGCCR	2 cut(s)	415, 1640
Eam1104I	CTCTTC	8 cut(s)	644, 747, 1028, 1671, 2211, 2259, 2358, 2433
EarI	CTCTTC	8 cut(s)	644, 747, 1028, 1671, 2211, 2259, 2358, 2433
Ecl136II	GAGCTC	2 cut(s)	1021, 1432
Eco130I	CCWWGG	1 cut(s)	2306
Eco147I	AGGCCT	1 cut(s)	1116
Eco24I	GRGCYC	2 cut(s)	1023, 1434
Eco31I	GGTCTC	1 cut(s)	2167
Eco32I	GATATC	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	2743
Eco53kI	GAGCTC	2 cut(s)	1021, 1432
Eco57I	CTGAAG	2 cut(s)	195, 1009
Eco88I	CYCGRG	1 cut(s)	1847
EcoICRI	GAGCTC	2 cut(s)	1021, 1432
EcoRI	GAATTC	1 cut(s)	242
EcoRII	CCWGG	2 cut(s)	141, 834
EcoRV	GATATC	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	2306
EcoT22I	ATGCAT	3 cut(s)	673, 1503, 2428
EcoT38I	GRGCYC	2 cut(s)	1023, 1434
ErhI	CCWWGG	1 cut(s)	2306
Esp3I	CGTCTC	1 cut(s)	1868
FalI	AAGNNNNNCTT	2 cut(s)	876, 908
FaqI	GGGAC	2 cut(s)	1193, 2087
FauNDI	CATATG	1 cut(s)	2428
FbaI	TGATCA	1 cut(s)	375
FblI	GTMKAC	4 cut(s)	280, 1529, 1560, 2083
Fnu4HI	GCNGC	2 cut(s)	296, 2291
FokI	GGATG	7 cut(s)	161, 424, 555, 566, 1769, 1907, 2719
FriOI	GRGCYC	2 cut(s)	1023, 1434
Fsp4HI	GCNGC	2 cut(s)	296, 2291
GlaI	GCGC	3 cut(s)	313, 1946, 2261
GluI	GCNGC	2 cut(s)	296, 2291
HaeII	RGCGCY	1 cut(s)	315
HaeIII	GGCC	7 cut(s)	14, 215, 417, 1116, 1483, 1642, 2759
HapII	CCGG	3 cut(s)	1643, 2231, 2545
HgaI	GACGC	2 cut(s)	1850, 1896
HhaI	GCGC	3 cut(s)	314, 1947, 2262
Hin1I	GRCGYC	2 cut(s)	30, 1861
Hin6I	GCGC	3 cut(s)	312, 1945, 2260
HinP1I	GCGC	3 cut(s)	312, 1945, 2260
HincII	GTYRAC	2 cut(s)	281, 1530
HindII	GTYRAC	2 cut(s)	281, 1530
HindIII	AAGCTT	4 cut(s)	135, 718, 867, 2047
HpaII	CCGG	3 cut(s)	1643, 2231, 2545
HphI	GGTGA	5 cut(s)	658, 974, 2245, 2542, 2687
Hpy166II	GTNNAC	9 cut(s)	281, 706, 982, 1530, 1561, 1792, 2084, 2249, 2746
Hpy188I	TCNGA	9 cut(s)	51, 206, 442, 911, 1509, 1884, 2068, 2403, 2667
Hpy8I	GTNNAC	9 cut(s)	281, 706, 982, 1530, 1561, 1792, 2084, 2249, 2746
Hpy99I	CGWCG	1 cut(s)	1602
HpyCH4III	ACNGT	3 cut(s)	410, 574, 2584
HpyCH4IV	ACGT	2 cut(s)	30, 2298
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 20, 164, 1904, 2041
HpyF3I	CTNAG	7 cut(s)	125, 1071, 1158, 1256, 1536, 1899, 2706
HpySE526I	ACGT	2 cut(s)	30, 2298
Hsp92I	GRCGYC	2 cut(s)	30, 1861
HspAI	GCGC	3 cut(s)	312, 1945, 2260
Ksp22I	TGATCA	1 cut(s)	375
Kzo9I	GATC	6 cut(s)	375, 1171, 1504, 2413, 2680, 2709
LguI	GCTCTTC	1 cut(s)	1028
LmnI	GCTCC	7 cut(s)	118, 319, 428, 559, 1018, 1429, 2572
Lsp1109I	GCAGC	2 cut(s)	282, 2277
LweI	GCATC	8 cut(s)	210, 1216, 1488, 1500, 1771, 1885, 2124, 2523
MabI	ACCWGGT	1 cut(s)	834
MaeII	ACGT	2 cut(s)	30, 2298
MaeIII	GTNAC	6 cut(s)	801, 925, 1164, 1393, 1449, 1908
MalI	GATC	6 cut(s)	377, 1173, 1506, 2415, 2682, 2711
MboI	GATC	6 cut(s)	375, 1171, 1504, 2413, 2680, 2709
MfeI	CAATTG	3 cut(s)	1201, 1280, 2166
MhlI	GDGCHC	3 cut(s)	1023, 1434, 2272
MlsI	TGGCCA	1 cut(s)	417
MluNI	TGGCCA	1 cut(s)	417
MlyI	GAGTC	6 cut(s)	485, 790, 830, 1735, 1859, 2095
MmeI	TCCRAC	2 cut(s)	2451, 2460
Mox20I	TGGCCA	1 cut(s)	417
Mph1103I	ATGCAT	3 cut(s)	673, 1503, 2428
MroXI	GAANNNNTTC	5 cut(s)	137, 447, 1037, 1116, 2226
MscI	TGGCCA	1 cut(s)	417
MslI	CAYNNNNRTG	2 cut(s)	258, 1685
Msp20I	TGGCCA	1 cut(s)	417
MspCI	CTTAAG	1 cut(s)	2108
MspI	CCGG	3 cut(s)	1643, 2231, 2545
MspR9I	CCNGG	3 cut(s)	143, 836, 1644
MunI	CAATTG	3 cut(s)	1201, 1280, 2166
Mva1269I	GAATGC	3 cut(s)	778, 1037, 2428
MvaI	CCWGG	2 cut(s)	143, 836
MvnI	CGCG	1 cut(s)	2260
MwoI	GCNNNNNNNGC	5 cut(s)	11, 20, 164, 1904, 2041
NciI	CCSGG	1 cut(s)	1644
NdeI	CATATG	1 cut(s)	2428
NdeII	GATC	6 cut(s)	375, 1171, 1504, 2413, 2680, 2709
NmuCI	GTSAC	3 cut(s)	1164, 1393, 1908
NsiI	ATGCAT	3 cut(s)	673, 1503, 2428
NspI	RCATGY	5 cut(s)	259, 954, 1385, 1690, 2720
NspV	TTCGAA	1 cut(s)	715
PaeI	GCATGC	1 cut(s)	954
PceI	AGGCCT	1 cut(s)	1116
PciI	ACATGT	4 cut(s)	255, 1381, 1686, 2716
PciSI	GCTCTTC	1 cut(s)	1028
PctI	GAATGC	3 cut(s)	778, 1037, 2428
PdmI	GAANNNNTTC	5 cut(s)	137, 447, 1037, 1116, 2226
PfeI	GAWTC	6 cut(s)	397, 918, 1079, 1657, 2063, 2179
PflFI	GACNNNGTC	1 cut(s)	1184
PflMI	CCANNNNNTGG	1 cut(s)	1099
PkrI	GCNGC	2 cut(s)	297, 2292
PleI	GAGTC	6 cut(s)	484, 789, 829, 1735, 1858, 2095
PpsI	GAGTC	6 cut(s)	484, 789, 829, 1735, 1858, 2095
PscI	ACATGT	4 cut(s)	255, 1381, 1686, 2716
Psp124BI	GAGCTC	2 cut(s)	1023, 1434
Psp6I	CCWGG	2 cut(s)	141, 834
PspGI	CCWGG	2 cut(s)	141, 834
PspPI	GGNCC	1 cut(s)	2743
PsyI	GACNNNGTC	1 cut(s)	1184
RsaI	GTAC	7 cut(s)	407, 705, 758, 1474, 2334, 2549, 2694
RsaNI	GTAC	7 cut(s)	406, 704, 757, 1473, 2333, 2548, 2693
RseI	CAYNNNNRTG	2 cut(s)	258, 1685
SacI	GAGCTC	2 cut(s)	1023, 1434
SalI	GTCGAC	2 cut(s)	279, 1528
SapI	GCTCTTC	1 cut(s)	1028
SatI	GCNGC	2 cut(s)	296, 2291
Sau3AI	GATC	6 cut(s)	375, 1171, 1504, 2413, 2680, 2709
Sau96I	GGNCC	1 cut(s)	2743
ScaI	AGTACT	1 cut(s)	758
SchI	GAGTC	6 cut(s)	485, 790, 830, 1735, 1859, 2095
ScrFI	CCNGG	3 cut(s)	143, 836, 1644
SduI	GDGCHC	3 cut(s)	1023, 1434, 2272
SexAI	ACCWGGT	1 cut(s)	834
SfaNI	GCATC	8 cut(s)	210, 1216, 1488, 1500, 1771, 1885, 2124, 2523
SfuI	TTCGAA	1 cut(s)	715
SinI	GGWCC	1 cut(s)	2743
SmiI	ATTTAAAT	1 cut(s)	1815
SmiMI	CAYNNNNRTG	2 cut(s)	258, 1685
SmlI	CTYRAG	3 cut(s)	59, 1804, 2108
SmoI	CTYRAG	3 cut(s)	59, 1804, 2108
SpeI	ACTAGT	1 cut(s)	2078
SphI	GCATGC	1 cut(s)	954
SseBI	AGGCCT	1 cut(s)	1116
SsiI	CCGC	3 cut(s)	473, 1867, 2258
SstI	GAGCTC	2 cut(s)	1023, 1434
StuI	AGGCCT	1 cut(s)	1116
StyD4I	CCNGG	3 cut(s)	141, 834, 1642
StyI	CCWWGG	1 cut(s)	2306
SwaI	ATTTAAAT	1 cut(s)	1815
TaaI	ACNGT	3 cut(s)	410, 574, 2584
TaiI	ACGT	2 cut(s)	33, 2301
TaqI	TCGA	8 cut(s)	280, 660, 715, 916, 934, 1529, 2018, 2266
TatI	WGTACW	2 cut(s)	756, 2692
TfiI	GAWTC	6 cut(s)	397, 918, 1079, 1657, 2063, 2179
TscAI	CASTG	6 cut(s)	91, 1173, 1719, 1975, 2397, 2589
TseFI	GTSAC	3 cut(s)	1164, 1393, 1908
TseI	GCWGC	2 cut(s)	295, 2290
Tsp45I	GTSAC	3 cut(s)	1164, 1393, 1908
TspDTI	ATGAA	9 cut(s)	111, 146, 234, 235, 255, 478, 654, 1212, 2229
TspGWI	ACGGA	2 cut(s)	41, 1430
TspRI	CASTG	6 cut(s)	91, 1173, 1719, 1975, 2397, 2589
Tth111I	GACNNNGTC	1 cut(s)	1184
Van91I	CCANNNNNTGG	1 cut(s)	1099
Vha464I	CTTAAG	1 cut(s)	2108
VpaK11BI	GGWCC	1 cut(s)	2743
XapI	RAATTY	4 cut(s)	242, 766, 1219, 1816
XbaI	TCTAGA	3 cut(s)	844, 1744, 2354
XceI	RCATGY	5 cut(s)	259, 954, 1385, 1690, 2720
XcmI	CCANNNNNNNNNTGG	3 cut(s)	324, 490, 832
XmiI	GTMKAC	4 cut(s)	280, 1529, 1560, 2083
XmnI	GAANNNNTTC	5 cut(s)	137, 447, 1037, 1116, 2226
ZraI	GACGTC	1 cut(s)	31
ZrmI	AGTACT	1 cut(s)	758
Zsp2I	ATGCAT	3 cut(s)	673, 1503, 2428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.