Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003555

Physical Location & Seq

Genomic Coordinates Forward (+)

13507963 .. 13512203

Gene Structure 4241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G215900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGACTAAATCCCCGATTCAGCAACCAGAAGCACATTTGCACGACACGAGCCTACAACAAAGTAAACAGCAAATTAAACTGGAACCGAAACCCTCGCTCTTCCCTCTCTTTTCCGGGGTTTTCCTCTTCTCCTTGGCTCTTTCGCCGTCTTCAATGGAGAAACTGAGAAAAGCAGTGAGCGAGATCGCCTACGCTCAGAACCACGCTAAGCTCACTCATCTTCAACTCTCTCTGATCCCTGTCCTCTGCTTCGCCTCCTCTCTCTACAAGCTCGCTCTCTTTCTCCGCCGCTCTCTCTACCATTCCGGCCTCTTCAGAAAGCACCGGTTGCCGGTGCCAGTGATCAGTGTTGGGAATTTGACATGGGGAGGCAATGGGAAAACTCCGATGGCGGAGTTCATTGCTCGCTTTTTAGCTGATTCAGGAATTTCACCTCTCATTCTTACTAGGGGTTATGCTGGTGGGGATGAAGCCAGAATGCTTCATAGGCATTTACTTGGAAGGCCTGTAAAGATTGGTGTGGGTGCAAAACGGGCAGCTGTTGCTGCTCGATTTTTTGAAAGATATGGTTATGTTGATCCTAGCTCTACGAGTAAACGCTCTGATGGACTGTGCATTGAACCGAAAGTGGGGGGTCATCTTAGTTCAGAAAAAATTGGTGCTGTAATTCTTGACGATGGAATGCAGCACTGGAGCTTGCAGCGTGATCTAGAGATTGTAATGGTTAACGGATTAACACTATGGGGCAACTGTCACTTAATCCCACGTGGACCGTTAAGGGAGCCTTTGAATGCGCTTAGACGGGCAGATGTTGTTGTACTCCATCATGCAGATTTGGTTTCAGAACAAAATCTCAAAGATATTGACTTGATGCTACAACAAGTTAATAAATCTCTTCCTATTTTCTTCACTAAAATGGATCCCTGTTATTTCTTTGACGTGGGAAATGTCAACTCCAGAAAACCTCTGAGGGATTTGTCTAACAGCATTGTATTATGTGTTTCTGCCATTGGTTCATCAAATGCATTTGTGAAGGGAGTTGAGAAGATAGGAGCATTCTATGTTGATCGCCTTGAATTCAGCGATCATCACATATTTCAGGCCAAGGATACTGAGATGATCAGGAGGAGACTAAGAGAGCTGGAGGACACGTTTGGGCACAAGCCAGTTGTTATAGTCACAGAAAAGGATTATGATCGAGACCCAGAGATTTTTAAGCACTTGGATCCTTATGAAGTTTTGGCACTCTGTTCGGAATTGAAGATCATACCTCACAGAGAATGCACTGAATATGGCTTCAAAAAGTTATTGAAAGGAGATTTGAAAGATGAATTACAAGGTACAGACAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009029 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

LpxK

Protein Analysis

452

Amino Acids

50.76

Weight (kDa)

9.06

Isoelectric Point (pI)

44.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20480 AT3G20480 AT3G20480 AT3G20480 AT3G20480
fragaria_vesca	FvH4_3g19730 FvH4_3g19730 FvH4_3g19730 FvH4_3g19730 FvH4_3g19730 FvH4_3g19730 FvH4_3g19730 FvH4_3g19730 FvH4_3g19730
malus_domestica	MD11G1215400.v1.1
prunus_persica	Prupe.4G215900_v2.0.a1 Prupe.4G215900_v2.0.a1 Prupe.4G215900_v2.0.a1 Prupe.4G215900_v2.0.a1 Prupe.4G215900_v2.0.a1 Prupe.4G215900_v2.0.a1 Prupe.4G215900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0033071
rosa_laevigata	RLG00000033446
rosa_multiflora	Rmu_co8438333.1_g000001 Rmu_sc0012010.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046870 Rroxscaffold_1G00046980
rosa_rugosa	Rorug05G0135900 Rorug05G0136000
rosa_samantha	Rh5AG228300 Rh5BG229500 Rh5CG257300 Rh5DG234300
rosa_wichuraiana	Rw5G020890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	334
AccBSI	CCGCTC	1 cut(s)	291
AciI	CCGC	3 cut(s)	286, 289, 392
AclWI	GGATC	6 cut(s)	229, 572, 914, 927, 1220, 1233
AcsI	RAATTY	3 cut(s)	355, 426, 1076
AcuI	CTGAAG	1 cut(s)	298
AcvI	CACGTG	1 cut(s)	767
AfaI	GTAC	2 cut(s)	819, 1342
AfiI	CCNNNNNNNGG	2 cut(s)	331, 629
AflIII	ACRYGT	1 cut(s)	1149
AgeI	ACCGGT	1 cut(s)	324
AjiI	CACGTC	1 cut(s)	940
AluBI	AGCT	7 cut(s)	211, 271, 416, 539, 585, 696, 1141
AluI	AGCT	7 cut(s)	211, 271, 416, 539, 585, 696, 1141
Alw26I	GTCTC	2 cut(s)	1123, 1194
AlwI	GGATC	6 cut(s)	229, 572, 914, 927, 1220, 1233
AoxI	GGCC	3 cut(s)	307, 503, 1101
ApeKI	GCWGC	4 cut(s)	536, 545, 685, 700
ApoI	RAATTY	3 cut(s)	355, 426, 1076
AsiGI	ACCGGT	1 cut(s)	324
AspLEI	GCGC	1 cut(s)	796
AspS9I	GGNCC	1 cut(s)	770
AsuC2I	CCSGG	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	423
AvaII	GGWCC	1 cut(s)	770
BaeGI	GKGCMC	1 cut(s)	1161
BamHI	GGATCC	2 cut(s)	919, 1225
BanI	GGYRCC	1 cut(s)	334
BauI	CACGAG	1 cut(s)	46
BbrPI	CACGTG	1 cut(s)	767
BbsI	GAAGAC	1 cut(s)	141
BbvI	GCAGC	4 cut(s)	532, 548, 697, 712
BccI	CCATC	4 cut(s)	382, 599, 671, 831
BceAI	ACGGC	1 cut(s)	130
BcgI	CGANNNNNNTGC	2 cut(s)	1233, 1267
BciVI	GTATCC	1 cut(s)	1102
BclI	TGATCA	2 cut(s)	342, 1119
BcnI	CCSGG	1 cut(s)	115
BcoDI	GTCTC	2 cut(s)	1123, 1194
BfaI	CTAG	3 cut(s)	447, 582, 710
BfuI	GTATCC	1 cut(s)	1102
BisI	GCNGC	5 cut(s)	289, 537, 546, 686, 701
BlpI	GCTNAGC	1 cut(s)	207
BlsI	GCNGC	5 cut(s)	290, 538, 547, 687, 702
Bme1390I	CCNGG	1 cut(s)	115
Bme18I	GGWCC	1 cut(s)	770
BmgBI	CACGTC	1 cut(s)	940
BmgT120I	GGNCC	1 cut(s)	770
BmiI	GGNNCC	5 cut(s)	84, 336, 783, 921, 1227
BmrFI	CCNGG	1 cut(s)	115
BmsI	GCATC	1 cut(s)	861
BpiI	GAAGAC	1 cut(s)	141
BpmI	CTGGAG	3 cut(s)	712, 940, 1163
Bpu1102I	GCTNAGC	1 cut(s)	207
BpuMI	CCSGG	1 cut(s)	115
BsaAI	YACGTR	1 cut(s)	767
BsaBI	GATNNNNATC	1 cut(s)	1194
BsaI	GGTCTC	1 cut(s)	1194
BsaJI	CCNNGG	3 cut(s)	114, 132, 1104
BsaWI	WCCGGW	1 cut(s)	324
BsaXI	ACNNNNNCTCC	2 cut(s)	1136, 1166
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 629
Bse118I	RCCGGY	2 cut(s)	324, 331
Bse1I	ACTGG	4 cut(s)	84, 338, 695, 1166
Bse3DI	GCAATG	2 cut(s)	379, 399
Bse8I	GATNNNNATC	1 cut(s)	1194
BseDI	CCNNGG	3 cut(s)	114, 132, 1104
BseGI	GGATG	1 cut(s)	472
BseJI	GATNNNNATC	1 cut(s)	1194
BseLI	CCNNNNNNNGG	2 cut(s)	331, 629
BseMI	GCAATG	2 cut(s)	379, 399
BseMII	CTCAG	4 cut(s)	155, 209, 959, 1104
BseNI	ACTGG	4 cut(s)	84, 338, 695, 1166
BseRI	GAGGAG	2 cut(s)	247, 1141
BseSI	GKGCMC	1 cut(s)	1161
BseXI	GCAGC	4 cut(s)	532, 548, 697, 712
BshFI	GGCC	3 cut(s)	309, 505, 1103
BshNI	GGYRCC	1 cut(s)	334
BshTI	ACCGGT	1 cut(s)	324
BsiSI	CCGG	4 cut(s)	114, 306, 325, 332
BslI	CCNNNNNNNGG	2 cut(s)	331, 629
BsmAI	GTCTC	2 cut(s)	1123, 1194
BsmI	GAATGC	5 cut(s)	483, 687, 796, 1055, 1286
BsnI	GGCC	3 cut(s)	309, 505, 1103
Bso31I	GGTCTC	1 cut(s)	1194
Bsp1286I	GDGCHC	1 cut(s)	1161
Bsp1720I	GCTNAGC	1 cut(s)	207
BspACI	CCGC	3 cut(s)	286, 289, 392
BspANI	GGCC	3 cut(s)	309, 505, 1103
BspCNI	CTCAG	4 cut(s)	156, 208, 960, 1105
BspLI	GGNNCC	5 cut(s)	84, 336, 783, 921, 1227
BspPI	GGATC	6 cut(s)	229, 572, 914, 927, 1220, 1233
BspQI	GCTCTTC	1 cut(s)	104
BspT107I	GGYRCC	1 cut(s)	334
BspTNI	GGTCTC	1 cut(s)	1194
BsrBI	CCGCTC	1 cut(s)	291
BsrDI	GCAATG	2 cut(s)	379, 399
BsrFI	RCCGGY	2 cut(s)	324, 331
BsrI	ACTGG	4 cut(s)	84, 338, 695, 1166
BssAI	RCCGGY	2 cut(s)	324, 331
BssECI	CCNNGG	3 cut(s)	114, 132, 1104
BssSI	CACGAG	1 cut(s)	46
BssT1I	CCWWGG	2 cut(s)	132, 1104
Bst2BI	CACGAG	1 cut(s)	46
Bst4CI	ACNGT	3 cut(s)	612, 752, 774
Bst6I	CTCTTC	4 cut(s)	104, 131, 317, 900
BstAPI	GCANNNNNTGC	2 cut(s)	328, 542
BstBAI	YACGTR	1 cut(s)	767
BstC8I	GCNNGC	3 cut(s)	273, 406, 698
BstDEI	CTNAG	8 cut(s)	164, 195, 207, 641, 797, 968, 1113, 1133
BstF5I	GGATG	1 cut(s)	472
BstHHI	GCGC	1 cut(s)	796
BstMAI	GTCTC	2 cut(s)	1123, 1194
BstMWI	GCNNNNNNNGC	5 cut(s)	328, 487, 533, 542, 545
BstSCI	CCNGG	1 cut(s)	113
BstSLI	GKGCMC	1 cut(s)	1161
BstV1I	GCAGC	4 cut(s)	532, 548, 697, 712
BstV2I	GAAGAC	1 cut(s)	141
BstX2I	RGATCY	2 cut(s)	919, 1225
BstYI	RGATCY	2 cut(s)	919, 1225
BsuI	GTATCC	1 cut(s)	1102
BsuRI	GGCC	3 cut(s)	309, 505, 1103
BtrI	CACGTC	1 cut(s)	940
BtsCI	GGATG	1 cut(s)	472
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	5 cut(s)	180, 345, 352, 688, 1284
Cac8I	GCNNGC	3 cut(s)	273, 406, 698
CfoI	GCGC	1 cut(s)	796
Cfr10I	RCCGGY	2 cut(s)	324, 331
Cfr13I	GGNCC	1 cut(s)	770
Csp6I	GTAC	2 cut(s)	818, 1341
CspAI	ACCGGT	1 cut(s)	324
CviAII	CATG	2 cut(s)	363, 827
CviQI	GTAC	2 cut(s)	818, 1341
DdeI	CTNAG	8 cut(s)	164, 195, 207, 641, 797, 968, 1113, 1133
Eam1104I	CTCTTC	4 cut(s)	104, 131, 317, 900
EarI	CTCTTC	4 cut(s)	104, 131, 317, 900
EciI	GGCGGA	2 cut(s)	275, 407
Eco130I	CCWWGG	2 cut(s)	132, 1104
Eco147I	AGGCCT	1 cut(s)	505
Eco31I	GGTCTC	1 cut(s)	1194
Eco47I	GGWCC	1 cut(s)	770
Eco57I	CTGAAG	1 cut(s)	298
Eco72I	CACGTG	1 cut(s)	767
EcoRI	GAATTC	1 cut(s)	1076
EcoT14I	CCWWGG	2 cut(s)	132, 1104
EcoT22I	ATGCAT	1 cut(s)	1027
ErhI	CCWWGG	2 cut(s)	132, 1104
FaeI	CATG	2 cut(s)	366, 830
FalI	AAGNNNNNCTT	2 cut(s)	769, 801
FatI	CATG	2 cut(s)	362, 826
FbaI	TGATCA	2 cut(s)	342, 1119
Fnu4HI	GCNGC	5 cut(s)	289, 537, 546, 686, 701
FokI	GGATG	1 cut(s)	479
Fsp4HI	GCNGC	5 cut(s)	289, 537, 546, 686, 701
FspBI	CTAG	3 cut(s)	447, 582, 710
GlaI	GCGC	1 cut(s)	795
GluI	GCNGC	5 cut(s)	289, 537, 546, 686, 701
GsuI	CTGGAG	3 cut(s)	712, 940, 1163
HaeIII	GGCC	3 cut(s)	309, 505, 1103
HapII	CCGG	4 cut(s)	114, 306, 325, 332
HhaI	GCGC	1 cut(s)	796
Hin1II	CATG	2 cut(s)	366, 830
Hin6I	GCGC	1 cut(s)	794
HinP1I	GCGC	1 cut(s)	794
HincII	GTYRAC	2 cut(s)	727, 952
HindII	GTYRAC	2 cut(s)	727, 952
HinfI	GANTC	2 cut(s)	16, 419
HpaI	GTTAAC	1 cut(s)	727
HpaII	CCGG	4 cut(s)	114, 306, 325, 332
HphI	GGTGA	1 cut(s)	423
Hpy166II	GTNNAC	5 cut(s)	65, 596, 727, 770, 952
Hpy188I	TCNGA	9 cut(s)	198, 234, 317, 387, 604, 649, 844, 969, 1255
Hpy188III	TCNNGA	6 cut(s)	423, 671, 710, 957, 1123, 1199
Hpy8I	GTNNAC	5 cut(s)	65, 596, 727, 770, 952
HpyAV	CCTTC	2 cut(s)	495, 1027
HpyCH4III	ACNGT	3 cut(s)	612, 752, 774
HpyCH4IV	ACGT	3 cut(s)	766, 939, 1151
HpyCH4V	TGCA	8 cut(s)	40, 527, 615, 685, 700, 830, 1025, 1284
HpyF10VI	GCNNNNNNNGC	5 cut(s)	328, 487, 533, 542, 545
HpyF3I	CTNAG	8 cut(s)	164, 195, 207, 641, 797, 968, 1113, 1133
HpySE526I	ACGT	3 cut(s)	766, 939, 1151
Hsp92II	CATG	2 cut(s)	366, 830
HspAI	GCGC	1 cut(s)	794
Ksp22I	TGATCA	2 cut(s)	342, 1119
KspAI	GTTAAC	1 cut(s)	727
LguI	GCTCTTC	1 cut(s)	104
LmnI	GCTCC	3 cut(s)	693, 781, 1052
Lsp1109I	GCAGC	4 cut(s)	532, 548, 697, 712
LweI	GCATC	1 cut(s)	861
MaeI	CTAG	3 cut(s)	447, 582, 710
MaeII	ACGT	3 cut(s)	766, 939, 1151
MaeIII	GTNAC	2 cut(s)	752, 1177
MbiI	CCGCTC	1 cut(s)	291
MboII	GAAGA	9 cut(s)	91, 118, 141, 212, 304, 887, 898, 1057, 1273
MflI	RGATCY	2 cut(s)	919, 1225
MhlI	GDGCHC	1 cut(s)	1161
MluCI	AATT	9 cut(s)	72, 355, 426, 654, 666, 1076, 1256, 1331, 1351
Mph1103I	ATGCAT	1 cut(s)	1027
MseI	TTAA	8 cut(s)	75, 726, 734, 758, 776, 885, 1215, 1354
MslI	CAYNNNNRTG	1 cut(s)	914
MspA1I	CMGCKG	1 cut(s)	539
MspI	CCGG	4 cut(s)	114, 306, 325, 332
MspR9I	CCNGG	1 cut(s)	115
Mva1269I	GAATGC	5 cut(s)	483, 687, 796, 1055, 1286
MwoI	GCNNNNNNNGC	5 cut(s)	328, 487, 533, 542, 545
NciI	CCSGG	1 cut(s)	115
NlaIII	CATG	2 cut(s)	366, 830
NlaIV	GGNNCC	5 cut(s)	84, 336, 783, 921, 1227
NmuCI	GTSAC	2 cut(s)	752, 1177
NsiI	ATGCAT	1 cut(s)	1027
PceI	AGGCCT	1 cut(s)	505
PciSI	GCTCTTC	1 cut(s)	104
PctI	GAATGC	5 cut(s)	483, 687, 796, 1055, 1286
PfeI	GAWTC	2 cut(s)	16, 419
PinAI	ACCGGT	1 cut(s)	324
PkrI	GCNGC	5 cut(s)	290, 538, 547, 687, 702
PmaCI	CACGTG	1 cut(s)	767
PmlI	CACGTG	1 cut(s)	767
Ppu21I	YACGTR	1 cut(s)	767
PspCI	CACGTG	1 cut(s)	767
PspN4I	GGNNCC	5 cut(s)	84, 336, 783, 921, 1227
PspPI	GGNCC	1 cut(s)	770
PsuI	RGATCY	2 cut(s)	919, 1225
PvuII	CAGCTG	1 cut(s)	539
RsaI	GTAC	2 cut(s)	819, 1342
RsaNI	GTAC	2 cut(s)	818, 1341
RseI	CAYNNNNRTG	1 cut(s)	914
SapI	GCTCTTC	1 cut(s)	104
SaqAI	TTAA	8 cut(s)	75, 726, 734, 758, 776, 885, 1215, 1354
SatI	GCNGC	5 cut(s)	289, 537, 546, 686, 701
Sau96I	GGNCC	1 cut(s)	770
ScrFI	CCNGG	1 cut(s)	115
SduI	GDGCHC	1 cut(s)	1161
SfaNI	GCATC	1 cut(s)	861
SinI	GGWCC	1 cut(s)	770
SmiMI	CAYNNNNRTG	1 cut(s)	914
Sse9I	AATT	9 cut(s)	72, 355, 426, 654, 666, 1076, 1256, 1331, 1351
SseBI	AGGCCT	1 cut(s)	505
SsiI	CCGC	3 cut(s)	286, 289, 392
SspMI	CTAG	3 cut(s)	447, 582, 710
StuI	AGGCCT	1 cut(s)	505
StyD4I	CCNGG	1 cut(s)	113
StyI	CCWWGG	2 cut(s)	132, 1104
TaaI	ACNGT	3 cut(s)	612, 752, 774
TaiI	ACGT	3 cut(s)	769, 942, 1154
TaqI	TCGA	2 cut(s)	550, 1198
TasI	AATT	9 cut(s)	72, 355, 426, 654, 666, 1076, 1256, 1331, 1351
TatI	WGTACW	1 cut(s)	817
TauI	GCSGC	1 cut(s)	291
TfiI	GAWTC	2 cut(s)	16, 419
Tru1I	TTAA	8 cut(s)	75, 726, 734, 758, 776, 885, 1215, 1354
Tru9I	TTAA	8 cut(s)	75, 726, 734, 758, 776, 885, 1215, 1354
TscAI	CASTG	5 cut(s)	180, 345, 352, 695, 1291
TseFI	GTSAC	2 cut(s)	752, 1177
TseI	GCWGC	4 cut(s)	536, 545, 685, 700
Tsp45I	GTSAC	2 cut(s)	752, 1177
TspDTI	ATGAA	6 cut(s)	388, 473, 483, 1005, 1248, 1344
TspGWI	ACGGA	1 cut(s)	744
TspRI	CASTG	5 cut(s)	180, 345, 352, 695, 1291
VpaK11BI	GGWCC	1 cut(s)	770
XapI	RAATTY	3 cut(s)	355, 426, 1076
XbaI	TCTAGA	1 cut(s)	709
XspI	CTAG	3 cut(s)	447, 582, 710
Zsp2I	ATGCAT	1 cut(s)	1027

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.