Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003555

Physical Location & Seq

Genomic Coordinates Forward (+)

26718513 .. 26721560

Gene Structure 3048 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG234300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGAGAAACTGAGAAAAGCCGTGAATGAAATGGCGTATACTCAACACCACGCTAAGCTCTCTCATCTTCAACTCTCTCTAATCCCCGTCCTCTTCTTGGCCTCATCTCTCTACAAGGCCGCTCTCTCTCTCCGCCGCGCTCTCTACCATTCCGGCCTCTTAAGACAGCACCGGTTGCCGGTGCCGGTGATCAGTGTTGGCAATTTGACATGGGGAGGCAATGGGAAAACTCCAATGGTGGAGTTCATTGCGAACTATTTAGCTGATTCAGGGATTTCACCTCTCATTCTGACCAGGGGTTATGCTGGTGGGGATGAGGCCAAGATGCTTCATAGGCATTTCCTTGGAAGGCCTGTTAAGATCGGTGTGGGTGCAAAGCGAGCAGCTGTTGCTGCTAGTTTTTTCGAAAGATATGGTTACGTTGAACCTAGCTCTAGTAAACTCTGCCATGGTCAGAAAGTGGGGAGTCATCTTAGTTCAGAAAAGATTGGCACCGTAATTCTTGATGATGGAATGCAGCACTGGAGCTTGCAACGGAATCTGGAGATTGTTATGATTAATGGATTAACATTATGGGGCAACTGTCACTTAATCCCACGTGGACCGTTGAGGGAACCTCTCAGTGCACTTAGACAGGCAGATGTTGTTGTACTCCATCACGCAGATTTGGTTTCAGAACAAAATCTCGAAGATACTGACTTAATGCTAAGAGAAGTTAACAAGTCTGTTCCTGTTTTCTTCACAAAAATGGATCCTTGTTATTTCTTCGACGTGGGAAATGCCACCTCTAGAAAACATGTAGGAGATTTGTCTAACACTATTGTATTATGTGTTACTGCCATTGGTTCTGCAAATTCATTTGCAAAGGGAATAGAGAAGATTGGAGCATTTTACGTTGATCGACATGAATTCAGTGACCACCACAAATTTCTGGCAAAGGTAGAGTTAGTTTTCTGCTTGCTCTTTGACATGAGATTCTTGTCATGTGCAGTCTGTTCTGTGTTAAACCAAATCATTGCACAGGCACCTTTTAAGCCCTATATGTTATATGCTTACTGCAAAAAACATGTAAAATGCAAATGTCCTTTGTTATTGCCGTCCAATCTCATCAATATAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009029 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

LpxK

Protein Analysis

373

Amino Acids

41.51

Weight (kDa)

9.2

Isoelectric Point (pI)

35.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LpxK	PF02606	30 - 103	1.3e-24	Tetraacyldisaccharide-1-P 4'-kinase
LpxK	PF02606	104 - 312	1.9e-34	Tetraacyldisaccharide-1-P 4'-kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20480 AT3G20480 AT3G20480 AT3G20480 AT3G20480
fragaria_vesca	FvH4_3g19730 FvH4_3g19730 FvH4_3g19730 FvH4_3g19730 FvH4_3g19730 FvH4_3g19730 FvH4_3g19730 FvH4_3g19730 FvH4_3g19730
malus_domestica	MD11G1215400.v1.1
prunus_persica	Prupe.4G215900_v2.0.a1 Prupe.4G215900_v2.0.a1 Prupe.4G215900_v2.0.a1 Prupe.4G215900_v2.0.a1 Prupe.4G215900_v2.0.a1 Prupe.4G215900_v2.0.a1 Prupe.4G215900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0033071
rosa_laevigata	RLG00000033446
rosa_multiflora	Rmu_co8438333.1_g000001 Rmu_sc0012010.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046870 Rroxscaffold_1G00046980
rosa_rugosa	Rorug05G0135900 Rorug05G0136000
rosa_samantha	Rh5AG228300 Rh5BG229500 Rh5CG257300 Rh5DG234300
rosa_wichuraiana	Rw5G020890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	181, 491, 1024
AccBSI	CCGCTC	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	38
AccII	CGCG	1 cut(s)	138
AciI	CCGC	3 cut(s)	120, 133, 136
AclWI	GGATC	2 cut(s)	746, 759
AcsI	RAATTY	3 cut(s)	853, 908, 926
AcvI	CACGTG	1 cut(s)	599
AfaI	GTAC	1 cut(s)	651
AfiI	CCNNNNNNNGG	2 cut(s)	97, 178
AflII	CTTAAG	1 cut(s)	160
AflIII	ACRYGT	2 cut(s)	796, 1066
AgeI	ACCGGT	1 cut(s)	171
AgsI	TTSAA	2 cut(s)	71, 425
AjiI	CACGTC	1 cut(s)	772
AjnI	CCWGG	1 cut(s)	293
AluBI	AGCT	5 cut(s)	58, 263, 386, 432, 528
AluI	AGCT	5 cut(s)	58, 263, 386, 432, 528
Alw21I	GWGCWC	1 cut(s)	628
Alw44I	GTGCAC	1 cut(s)	624
AlwI	GGATC	2 cut(s)	746, 759
AoxI	GGCC	5 cut(s)	99, 117, 154, 318, 350
ApaLI	GTGCAC	1 cut(s)	624
ApeKI	GCWGC	3 cut(s)	383, 392, 517
ApoI	RAATTY	3 cut(s)	853, 908, 926
AseI	ATTAAT	1 cut(s)	558
AsiGI	ACCGGT	1 cut(s)	171
AspLEI	GCGC	1 cut(s)	140
AspS9I	GGNCC	1 cut(s)	602
AsuHPI	GGTGA	2 cut(s)	199, 270
AsuII	TTCGAA	1 cut(s)	405
AvaII	GGWCC	1 cut(s)	602
BaeGI	GKGCMC	1 cut(s)	628
BamHI	GGATCC	1 cut(s)	751
BanI	GGYRCC	3 cut(s)	181, 491, 1024
BbrPI	CACGTG	1 cut(s)	599
Bbv12I	GWGCWC	1 cut(s)	628
BbvI	GCAGC	3 cut(s)	379, 395, 529
BccI	CCATC	2 cut(s)	503, 663
BceAI	ACGGC	2 cut(s)	5, 1081
BciT130I	CCWGG	1 cut(s)	295
BclI	TGATCA	1 cut(s)	189
BfaI	CTAG	4 cut(s)	396, 429, 435, 789
BfrI	CTTAAG	1 cut(s)	160
BisI	GCNGC	5 cut(s)	120, 136, 384, 393, 518
BlpI	GCTNAGC	1 cut(s)	54
BlsI	GCNGC	5 cut(s)	121, 137, 385, 394, 519
Bme1390I	CCNGG	1 cut(s)	295
Bme18I	GGWCC	1 cut(s)	602
BmgBI	CACGTC	1 cut(s)	772
BmgT120I	GGNCC	1 cut(s)	602
BmiI	GGNNCC	5 cut(s)	183, 493, 615, 753, 1026
BmrFI	CCNGG	1 cut(s)	295
BmsI	GCATC	1 cut(s)	315
BplI	GAGNNNNNCTC	2 cut(s)	601, 633
BpmI	CTGGAG	2 cut(s)	544, 563
Bpu1102I	GCTNAGC	1 cut(s)	54
Bpu14I	TTCGAA	1 cut(s)	405
BsaAI	YACGTR	1 cut(s)	599
BsaJI	CCNNGG	3 cut(s)	294, 343, 448
BsaWI	WCCGGW	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 178
Bse118I	RCCGGY	3 cut(s)	171, 178, 184
Bse1I	ACTGG	1 cut(s)	527
Bse3DI	GCAATG	3 cut(s)	226, 246, 1014
BseBI	CCWGG	1 cut(s)	295
BseDI	CCNNGG	3 cut(s)	294, 343, 448
BseGI	GGATG	1 cut(s)	319
BseLI	CCNNNNNNNGG	2 cut(s)	97, 178
BseMI	GCAATG	3 cut(s)	226, 246, 1014
BseMII	CTCAG	1 cut(s)	634
BseNI	ACTGG	1 cut(s)	527
BseSI	GKGCMC	1 cut(s)	628
BseXI	GCAGC	3 cut(s)	379, 395, 529
BsgI	GTGCAG	1 cut(s)	1008
Bsh1236I	CGCG	1 cut(s)	138
BshFI	GGCC	5 cut(s)	101, 119, 156, 320, 352
BshNI	GGYRCC	3 cut(s)	181, 491, 1024
BshTI	ACCGGT	1 cut(s)	171
BsiHKAI	GWGCWC	1 cut(s)	628
BsiSI	CCGG	4 cut(s)	153, 172, 179, 185
BslI	CCNNNNNNNGG	2 cut(s)	97, 178
BsmI	GAATGC	1 cut(s)	519
BsnI	GGCC	5 cut(s)	101, 119, 156, 320, 352
Bsp119I	TTCGAA	1 cut(s)	405
Bsp1286I	GDGCHC	1 cut(s)	628
Bsp143I	GATC	4 cut(s)	189, 360, 751, 898
Bsp1720I	GCTNAGC	1 cut(s)	54
Bsp19I	CCATGG	1 cut(s)	448
BspACI	CCGC	3 cut(s)	120, 133, 136
BspANI	GGCC	5 cut(s)	101, 119, 156, 320, 352
BspCNI	CTCAG	1 cut(s)	633
BspFNI	CGCG	1 cut(s)	138
BspLI	GGNNCC	5 cut(s)	183, 493, 615, 753, 1026
BspPI	GGATC	2 cut(s)	746, 759
BspT104I	TTCGAA	1 cut(s)	405
BspT107I	GGYRCC	3 cut(s)	181, 491, 1024
BspTI	CTTAAG	1 cut(s)	160
BsrBI	CCGCTC	1 cut(s)	122
BsrDI	GCAATG	3 cut(s)	226, 246, 1014
BsrFI	RCCGGY	3 cut(s)	171, 178, 184
BsrI	ACTGG	1 cut(s)	527
BssAI	RCCGGY	3 cut(s)	171, 178, 184
BssECI	CCNNGG	3 cut(s)	294, 343, 448
BssMI	GATC	4 cut(s)	189, 360, 751, 898
BssNAI	GTATAC	1 cut(s)	39
BssT1I	CCWWGG	2 cut(s)	343, 448
Bst1107I	GTATAC	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	295
Bst4CI	ACNGT	3 cut(s)	496, 584, 606
Bst6I	CTCTTC	1 cut(s)	98
BstAFI	CTTAAG	1 cut(s)	160
BstAPI	GCANNNNNTGC	2 cut(s)	175, 389
BstBAI	YACGTR	1 cut(s)	599
BstBI	TTCGAA	1 cut(s)	405
BstC8I	GCNNGC	3 cut(s)	381, 530, 959
BstDEI	CTNAG	6 cut(s)	11, 54, 473, 620, 629, 707
BstDSI	CCRYGG	1 cut(s)	448
BstF5I	GGATG	1 cut(s)	319
BstFNI	CGCG	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	4 cut(s)	192, 363, 754, 901
BstMBI	GATC	4 cut(s)	189, 360, 751, 898
BstMWI	GCNNNNNNNGC	5 cut(s)	175, 334, 380, 389, 392
BstNI	CCWGG	1 cut(s)	295
BstNSI	RCATGY	2 cut(s)	800, 1070
BstSCI	CCNGG	1 cut(s)	293
BstSLI	GKGCMC	1 cut(s)	628
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	3 cut(s)	379, 395, 529
BstX2I	RGATCY	1 cut(s)	751
BstYI	RGATCY	1 cut(s)	751
BstZ17I	GTATAC	1 cut(s)	39
BsuRI	GGCC	5 cut(s)	101, 119, 156, 320, 352
BtgI	CCRYGG	1 cut(s)	448
BtrI	CACGTC	1 cut(s)	772
BtsCI	GGATG	1 cut(s)	319
BtsIMutI	CAGTG	4 cut(s)	199, 520, 628, 919
Cac8I	GCNNGC	3 cut(s)	381, 530, 959
CfoI	GCGC	1 cut(s)	140
Cfr10I	RCCGGY	3 cut(s)	171, 178, 184
Cfr13I	GGNCC	1 cut(s)	602
Csp6I	GTAC	1 cut(s)	650
CspAI	ACCGGT	1 cut(s)	171
CviAII	CATG	7 cut(s)	210, 449, 797, 905, 970, 984, 1067
CviQI	GTAC	1 cut(s)	650
DdeI	CTNAG	6 cut(s)	11, 54, 473, 620, 629, 707
DpnI	GATC	4 cut(s)	191, 362, 753, 900
DpnII	GATC	4 cut(s)	189, 360, 751, 898
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
EciI	GGCGGA	1 cut(s)	122
Eco130I	CCWWGG	2 cut(s)	343, 448
Eco147I	AGGCCT	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	602
Eco72I	CACGTG	1 cut(s)	599
EcoRI	GAATTC	1 cut(s)	908
EcoRII	CCWGG	1 cut(s)	293
EcoT14I	CCWWGG	2 cut(s)	343, 448
ErhI	CCWWGG	2 cut(s)	343, 448
FaeI	CATG	7 cut(s)	213, 452, 800, 908, 973, 987, 1070
FatI	CATG	7 cut(s)	209, 448, 796, 904, 969, 983, 1066
FbaI	TGATCA	1 cut(s)	189
FblI	GTMKAC	1 cut(s)	38
Fnu4HI	GCNGC	5 cut(s)	120, 136, 384, 393, 518
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	5 cut(s)	120, 136, 384, 393, 518
FspBI	CTAG	4 cut(s)	396, 429, 435, 789
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	5 cut(s)	120, 136, 384, 393, 518
GsuI	CTGGAG	2 cut(s)	544, 563
HaeIII	GGCC	5 cut(s)	101, 119, 156, 320, 352
HapII	CCGG	4 cut(s)	153, 172, 179, 185
HhaI	GCGC	1 cut(s)	140
Hin1II	CATG	7 cut(s)	213, 452, 800, 908, 973, 987, 1070
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HincII	GTYRAC	1 cut(s)	718
HindII	GTYRAC	1 cut(s)	718
HinfI	GANTC	4 cut(s)	266, 466, 538, 975
HpaI	GTTAAC	1 cut(s)	718
HpaII	CCGG	4 cut(s)	153, 172, 179, 185
HphI	GGTGA	2 cut(s)	199, 270
Hpy166II	GTNNAC	5 cut(s)	39, 440, 602, 626, 718
Hpy188I	TCNGA	4 cut(s)	291, 456, 481, 676
Hpy188III	TCNNGA	4 cut(s)	503, 542, 686, 789
Hpy8I	GTNNAC	5 cut(s)	39, 440, 602, 626, 718
Hpy99I	CGWCG	1 cut(s)	773
HpyAV	CCTTC	1 cut(s)	342
HpyCH4III	ACNGT	3 cut(s)	496, 584, 606
HpyCH4IV	ACGT	4 cut(s)	420, 598, 771, 894
HpyF10VI	GCNNNNNNNGC	5 cut(s)	175, 334, 380, 389, 392
HpyF3I	CTNAG	6 cut(s)	11, 54, 473, 620, 629, 707
HpySE526I	ACGT	4 cut(s)	420, 598, 771, 894
Hsp92II	CATG	7 cut(s)	213, 452, 800, 908, 973, 987, 1070
HspAI	GCGC	1 cut(s)	138
Ksp22I	TGATCA	1 cut(s)	189
KspAI	GTTAAC	1 cut(s)	718
Kzo9I	GATC	4 cut(s)	189, 360, 751, 898
LmnI	GCTCC	2 cut(s)	525, 884
Lsp1109I	GCAGC	3 cut(s)	379, 395, 529
LweI	GCATC	1 cut(s)	315
MaeI	CTAG	4 cut(s)	396, 429, 435, 789
MaeII	ACGT	4 cut(s)	420, 598, 771, 894
MaeIII	GTNAC	4 cut(s)	416, 584, 832, 914
MalI	GATC	4 cut(s)	191, 362, 753, 900
MbiI	CCGCTC	1 cut(s)	122
MboI	GATC	4 cut(s)	189, 360, 751, 898
MboII	GAAGA	6 cut(s)	59, 85, 701, 730, 757, 889
MflI	RGATCY	1 cut(s)	751
MhlI	GDGCHC	1 cut(s)	628
MluCI	AATT	5 cut(s)	202, 498, 853, 908, 926
MlyI	GAGTC	1 cut(s)	475
MnlI	CCTC	9 cut(s)	101, 112, 167, 209, 291, 310, 603, 627, 796
MslI	CAYNNNNRTG	1 cut(s)	746
MspA1I	CMGCKG	1 cut(s)	386
MspCI	CTTAAG	1 cut(s)	160
MspI	CCGG	4 cut(s)	153, 172, 179, 185
MspR9I	CCNGG	1 cut(s)	295
Mva1269I	GAATGC	1 cut(s)	519
MvaI	CCWGG	1 cut(s)	295
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	5 cut(s)	175, 334, 380, 389, 392
NcoI	CCATGG	1 cut(s)	448
NdeII	GATC	4 cut(s)	189, 360, 751, 898
NlaIII	CATG	7 cut(s)	213, 452, 800, 908, 973, 987, 1070
NlaIV	GGNNCC	5 cut(s)	183, 493, 615, 753, 1026
NmuCI	GTSAC	2 cut(s)	584, 914
NspI	RCATGY	2 cut(s)	800, 1070
NspV	TTCGAA	1 cut(s)	405
PceI	AGGCCT	1 cut(s)	352
PciI	ACATGT	2 cut(s)	796, 1066
PctI	GAATGC	1 cut(s)	519
PfeI	GAWTC	3 cut(s)	266, 538, 975
PinAI	ACCGGT	1 cut(s)	171
PkrI	GCNGC	5 cut(s)	121, 137, 385, 394, 519
PleI	GAGTC	1 cut(s)	474
PmaCI	CACGTG	1 cut(s)	599
PmlI	CACGTG	1 cut(s)	599
PpsI	GAGTC	1 cut(s)	474
Ppu21I	YACGTR	1 cut(s)	599
PscI	ACATGT	2 cut(s)	796, 1066
PshBI	ATTAAT	1 cut(s)	558
Psp6I	CCWGG	1 cut(s)	293
PspCI	CACGTG	1 cut(s)	599
PspGI	CCWGG	1 cut(s)	293
PspN4I	GGNNCC	5 cut(s)	183, 493, 615, 753, 1026
PspPI	GGNCC	1 cut(s)	602
PsuI	RGATCY	1 cut(s)	751
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	1 cut(s)	651
RsaNI	GTAC	1 cut(s)	650
RseI	CAYNNNNRTG	1 cut(s)	746
SatI	GCNGC	5 cut(s)	120, 136, 384, 393, 518
Sau3AI	GATC	4 cut(s)	189, 360, 751, 898
Sau96I	GGNCC	1 cut(s)	602
SchI	GAGTC	1 cut(s)	475
ScrFI	CCNGG	1 cut(s)	295
SduI	GDGCHC	1 cut(s)	628
SfaNI	GCATC	1 cut(s)	315
SfuI	TTCGAA	1 cut(s)	405
SinI	GGWCC	1 cut(s)	602
SmiMI	CAYNNNNRTG	1 cut(s)	746
SmlI	CTYRAG	1 cut(s)	160
SmoI	CTYRAG	1 cut(s)	160
Sse9I	AATT	5 cut(s)	202, 498, 853, 908, 926
SseBI	AGGCCT	1 cut(s)	352
SsiI	CCGC	3 cut(s)	120, 133, 136
SspMI	CTAG	4 cut(s)	396, 429, 435, 789
StuI	AGGCCT	1 cut(s)	352
StyD4I	CCNGG	1 cut(s)	293
StyI	CCWWGG	2 cut(s)	343, 448
TaaI	ACNGT	3 cut(s)	496, 584, 606
TaiI	ACGT	4 cut(s)	423, 601, 774, 897
TaqI	TCGA	4 cut(s)	405, 687, 768, 901
TasI	AATT	5 cut(s)	202, 498, 853, 908, 926
TatI	WGTACW	1 cut(s)	649
TauI	GCSGC	2 cut(s)	122, 138
TfiI	GAWTC	3 cut(s)	266, 538, 975
TscAI	CASTG	4 cut(s)	199, 527, 628, 919
TseFI	GTSAC	2 cut(s)	584, 914
TseI	GCWGC	3 cut(s)	383, 392, 517
Tsp45I	GTSAC	2 cut(s)	584, 914
TspDTI	ATGAA	5 cut(s)	42, 235, 320, 846, 921
TspGWI	ACGGA	1 cut(s)	550
TspRI	CASTG	4 cut(s)	199, 527, 628, 919
Vha464I	CTTAAG	1 cut(s)	160
VneI	GTGCAC	1 cut(s)	624
VpaK11BI	GGWCC	1 cut(s)	602
VspI	ATTAAT	1 cut(s)	558
XapI	RAATTY	3 cut(s)	853, 908, 926
XbaI	TCTAGA	1 cut(s)	788
XceI	RCATGY	2 cut(s)	800, 1070
XmiI	GTMKAC	1 cut(s)	38
XspI	CTAG	4 cut(s)	396, 429, 435, 789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.