Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0010606

Physical Location & Seq

Genomic Coordinates Forward (+)

39722340 .. 39723023

Gene Structure 684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1279500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGTGGTCGATCATGGCTTCCGCCCGGCCTTCGTATTACCACTAGTTCTGGTCTTTACCTTCTCACCTATGAGCTCCAAAACAATGATTGCGGGGGCTCGCTGCCTTCTGGAGACTTCCTTGCCTCATGTGCCCGAGCTTCCGAAGCCTGAGCTGCCACCACTTCCCAATTTCCCAACGTTGCCAAAGCCTGAGCTGCCGCCGTTGCCTAAACCCGAATTGCCAAAGTTTCCAAATCCTGAGTTGCCACATGAGCTTCCAAAGCCTGAGCTGCCACAGTTGCCGAAACCTGAATTGCCAAAGTTTTCAAAGCCTGAGCTGCCGCATGAGCTTCCAAAGCCTGAGTTGCCGCCATTGCCTAAATCCGAATTGCCAAAGTTTCCGAAGCCTGAGTTGCCACCACTCTCTAAAGCCGAAAATGTACCAAAGCTTGAAGGCCTGAAATTGGCTGAAGTGCCCCATGTTCCAACCTTGCCTGCGGTGCCTCAACTTCCCAAGCCTGAATTGCCACCACTTCCCGAGTTCCCAACGTTTCCAAAGCCTGAGCTGCCACCATTGCCTAAGCCTGAATTGCCAAAGTTGCCTGCAATACCAACTCTTCCCCATCTTCCAACTGAGCTACCAAAGCCCACATTTCCCTCCATCCCTTCACTCACCCCACCTCACAAAACAACCCTTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

228

Amino Acids

25.02

Weight (kDa)

7.86

Isoelectric Point (pI)

71.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010606)

Species	Orthologous Gene IDs
malus_domestica	MD11G1279500.v1.1 MD11G1279600.v1.1
prunus_persica	Prupe.8G068800_v2.0.a1 Prupe.8G069600_v2.0.a1 Prupe.8G069700_v2.0.a1
pyrus_communis	pycom11g24720
rosa_chinensis	RchiOBHm_Chr6g0279251
rosa_laevigata	RLG00000013153 RLG00000013154
rosa_multiflora	Rmu_sc0005273.1_g000001 Rmu_sc0014203.1_g000003
rosa_roxburghii	Rroxscaffold_7G00189020
rosa_rugosa	Rorug06G0123800 Rorug06G0123900 Rorug06G0124200
rosa_samantha	Rh6AG232300 Rh6BG237000 Rh6CG239000 Rh6DG230600 Rh6DG230800
rosa_wichuraiana	Rw6G020320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	481
AciI	CCGC	6 cut(s)	22, 92, 200, 323, 350, 479
AclI	AACGTT	2 cut(s)	179, 530
AcuI	CTGAAG	1 cut(s)	471
AfaI	GTAC	1 cut(s)	423
AfiI	CCNNNNNNNGG	1 cut(s)	445
AgsI	TTSAA	2 cut(s)	309, 434
AhlI	ACTAGT	1 cut(s)	43
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	1 cut(s)	107
Ama87I	CYCGRG	2 cut(s)	134, 518
AoxI	GGCC	2 cut(s)	27, 436
ApeKI	GCWGC	6 cut(s)	102, 154, 196, 271, 319, 547
AsuC2I	CCSGG	1 cut(s)	26
AsuHPI	GGTGA	2 cut(s)	57, 646
AvaI	CYCGRG	2 cut(s)	134, 518
BaeGI	GKGCMC	2 cut(s)	135, 459
BanI	GGYRCC	1 cut(s)	481
BanII	GRGCYC	2 cut(s)	77, 100
Bbv12I	GWGCWC	1 cut(s)	77
BbvI	GCAGC	6 cut(s)	89, 141, 183, 258, 306, 534
BccI	CCATC	2 cut(s)	612, 650
BceAI	ACGGC	1 cut(s)	187
BcnI	CCSGG	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	107
BcuI	ACTAGT	1 cut(s)	43
BfaI	CTAG	1 cut(s)	44
BisI	GCNGC	9 cut(s)	103, 155, 197, 200, 272, 320, 323, 350, 548
BlsI	GCNGC	9 cut(s)	104, 156, 198, 201, 273, 321, 324, 351, 549
Bme1390I	CCNGG	1 cut(s)	26
BmeT110I	CYCGRG	2 cut(s)	134, 518
BmiI	GGNNCC	1 cut(s)	483
BmrFI	CCNGG	1 cut(s)	26
BpmI	CTGGAG	1 cut(s)	131
Bpu10I	CCTNAGC	6 cut(s)	150, 192, 267, 315, 543, 561
BpuMI	CCSGG	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	445
Bse3DI	GCAATG	2 cut(s)	353, 554
BseGI	GGATG	1 cut(s)	642
BseLI	CCNNNNNNNGG	1 cut(s)	445
BseMI	GCAATG	2 cut(s)	353, 554
BseMII	CTCAG	9 cut(s)	141, 183, 231, 258, 306, 333, 381, 534, 606
BseSI	GKGCMC	2 cut(s)	135, 459
BseXI	GCAGC	6 cut(s)	89, 141, 183, 258, 306, 534
BshFI	GGCC	2 cut(s)	29, 438
BshNI	GGYRCC	1 cut(s)	481
BsiHKAI	GWGCWC	1 cut(s)	77
BsiHKCI	CYCGRG	2 cut(s)	134, 518
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	445
BsmAI	GTCTC	1 cut(s)	107
BsnI	GGCC	2 cut(s)	29, 438
BsoBI	CYCGRG	2 cut(s)	134, 518
Bsp1286I	GDGCHC	4 cut(s)	77, 100, 135, 459
Bsp143I	GATC	1 cut(s)	10
BspACI	CCGC	6 cut(s)	22, 92, 200, 323, 350, 479
BspANI	GGCC	2 cut(s)	29, 438
BspCNI	CTCAG	9 cut(s)	142, 184, 232, 259, 307, 334, 382, 535, 607
BspLI	GGNNCC	1 cut(s)	483
BspT107I	GGYRCC	1 cut(s)	481
BsrDI	GCAATG	2 cut(s)	353, 554
BssMI	GATC	1 cut(s)	10
Bst4CI	ACNGT	1 cut(s)	279
Bst6I	CTCTTC	1 cut(s)	603
BstC8I	GCNNGC	3 cut(s)	100, 477, 585
BstF5I	GGATG	1 cut(s)	642
BstKTI	GATC	1 cut(s)	13
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	1 cut(s)	10
BstSCI	CCNGG	1 cut(s)	24
BstSLI	GKGCMC	2 cut(s)	135, 459
BstV1I	GCAGC	6 cut(s)	89, 141, 183, 258, 306, 534
BsuRI	GGCC	2 cut(s)	29, 438
BtsCI	GGATG	1 cut(s)	642
Cac8I	GCNNGC	3 cut(s)	100, 477, 585
Csp6I	GTAC	1 cut(s)	422
CviAII	CATG	5 cut(s)	14, 128, 251, 326, 461
CviQI	GTAC	1 cut(s)	422
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	603
EciI	GGCGGA	1 cut(s)	11
Ecl136II	GAGCTC	1 cut(s)	75
Eco147I	AGGCCT	1 cut(s)	438
Eco24I	GRGCYC	2 cut(s)	77, 100
Eco53kI	GAGCTC	1 cut(s)	75
Eco57I	CTGAAG	1 cut(s)	471
Eco88I	CYCGRG	2 cut(s)	134, 518
EcoICRI	GAGCTC	1 cut(s)	75
EcoT38I	GRGCYC	2 cut(s)	77, 100
FaeI	CATG	5 cut(s)	17, 131, 254, 329, 464
FaiI	YATR	6 cut(s)	15, 71, 129, 252, 327, 462
FatI	CATG	5 cut(s)	13, 127, 250, 325, 460
FauI	CCCGC	1 cut(s)	85
Fnu4HI	GCNGC	9 cut(s)	103, 155, 197, 200, 272, 320, 323, 350, 548
FokI	GGATG	1 cut(s)	629
FriOI	GRGCYC	2 cut(s)	77, 100
Fsp4HI	GCNGC	9 cut(s)	103, 155, 197, 200, 272, 320, 323, 350, 548
FspBI	CTAG	1 cut(s)	44
GluI	GCNGC	9 cut(s)	103, 155, 197, 200, 272, 320, 323, 350, 548
GsuI	CTGGAG	1 cut(s)	131
HaeIII	GGCC	2 cut(s)	29, 438
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	5 cut(s)	17, 131, 254, 329, 464
HindIII	AAGCTT	1 cut(s)	428
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	2 cut(s)	57, 646
Hpy188I	TCNGA	3 cut(s)	144, 367, 384
Hpy188III	TCNNGA	3 cut(s)	110, 239, 518
HpyAV	CCTTC	5 cut(s)	40, 70, 116, 428, 657
HpyCH4III	ACNGT	1 cut(s)	279
HpyCH4IV	ACGT	2 cut(s)	179, 530
HpyCH4V	TGCA	1 cut(s)	587
HpySE526I	ACGT	2 cut(s)	179, 530
Hsp92II	CATG	5 cut(s)	17, 131, 254, 329, 464
Kzo9I	GATC	1 cut(s)	10
LmnI	GCTCC	1 cut(s)	80
Lsp1109I	GCAGC	6 cut(s)	89, 141, 183, 258, 306, 534
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	2 cut(s)	179, 530
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MboII	GAAGA	2 cut(s)	590, 599
MhlI	GDGCHC	4 cut(s)	77, 100, 135, 459
MluCI	AATT	7 cut(s)	169, 218, 293, 368, 443, 503, 569
MmeI	TCCRAC	2 cut(s)	491, 635
MnlI	CCTC	4 cut(s)	135, 495, 649, 672
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	26
NciI	CCSGG	1 cut(s)	26
NdeII	GATC	1 cut(s)	10
NlaIII	CATG	5 cut(s)	17, 131, 254, 329, 464
NlaIV	GGNNCC	1 cut(s)	483
PceI	AGGCCT	1 cut(s)	438
PkrI	GCNGC	9 cut(s)	104, 156, 198, 201, 273, 321, 324, 351, 549
Psp124BI	GAGCTC	1 cut(s)	77
Psp1406I	AACGTT	2 cut(s)	179, 530
PspN4I	GGNNCC	1 cut(s)	483
RsaI	GTAC	1 cut(s)	423
RsaNI	GTAC	1 cut(s)	422
SacI	GAGCTC	1 cut(s)	77
SatI	GCNGC	9 cut(s)	103, 155, 197, 200, 272, 320, 323, 350, 548
Sau3AI	GATC	1 cut(s)	10
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	4 cut(s)	77, 100, 135, 459
SpeI	ACTAGT	1 cut(s)	43
Sse9I	AATT	7 cut(s)	169, 218, 293, 368, 443, 503, 569
SseBI	AGGCCT	1 cut(s)	438
SsiI	CCGC	6 cut(s)	22, 92, 200, 323, 350, 479
SspMI	CTAG	1 cut(s)	44
SstI	GAGCTC	1 cut(s)	77
StuI	AGGCCT	1 cut(s)	438
StyD4I	CCNGG	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	279
TaiI	ACGT	2 cut(s)	182, 533
TaqI	TCGA	1 cut(s)	9
TasI	AATT	7 cut(s)	169, 218, 293, 368, 443, 503, 569
TauI	GCSGC	3 cut(s)	202, 325, 352
TseI	GCWGC	6 cut(s)	102, 154, 196, 271, 319, 547
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.