Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010606

Physical Location & Seq

Genomic Coordinates Forward (+)

28795133 .. 28795741

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00189020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCCTCTCGTCGCTTCCCAGCCTTTGTCTTCCTTCTCTTGCTTTTCACCTTCTCGCTTATGAGCTCCAAAACACTGGTCCAAGGAGCTCGCTGTCTTCTCGAGACTCACTTGCCTGAGGTGCCTGAGCTTCCAAAGCCTGAATTGCCCCATCTTCCAAGTCTTCCAACCTTGCCAAAGCCTGAACTGCCACAGCTGCCGAAGCCCGAGCTGCCACCATTGCCAAAGCCGGAGCTTCCACAACTGCCAAAGCCAGAGCTGCCACATTTGCCCAAGCCTGAATTGCCATCATTGCCTAAGCCCGAGTTGCCACCATTGCCCCATGTACCAACTTTGCCAAAGCCTGAAGGCCTCAAGTTGGCTGAACAACCCCATCTCCCAACATTGCCTGAGCTTCCACCATTGCCAAAGCAGGAGGAGCTGCCATCATTGCCGAAGCCCGAACTCCCATCCCTTCCGAATCTCCCAAGTTTTCCAAAGCCTGAGGTACCAACACTACCTAAGCCGGAAATGCCAATTTTACCTCCACTGCCTCATCTCCCCGAGCTCCCTAAGACAGGATTACTCACCATCCCAACCCTCCCGAAAGACAAAACCATCCTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

202

Amino Acids

22.33

Weight (kDa)

7.03

Isoelectric Point (pI)

84.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010606)

Species	Orthologous Gene IDs
malus_domestica	MD11G1279500.v1.1 MD11G1279600.v1.1
prunus_persica	Prupe.8G068800_v2.0.a1 Prupe.8G069600_v2.0.a1 Prupe.8G069700_v2.0.a1
pyrus_communis	pycom11g24720
rosa_chinensis	RchiOBHm_Chr6g0279251
rosa_laevigata	RLG00000013153 RLG00000013154
rosa_multiflora	Rmu_sc0005273.1_g000001 Rmu_sc0014203.1_g000003
rosa_roxburghii	Rroxscaffold_7G00189020
rosa_rugosa	Rorug06G0123800 Rorug06G0123900 Rorug06G0124200
rosa_samantha	Rh6AG232300 Rh6BG237000 Rh6CG239000 Rh6DG230600 Rh6DG230800
rosa_wichuraiana	Rw6G020320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	487
AccB1I	GGYRCC	2 cut(s)	121, 487
AcuI	CTGAAG	1 cut(s)	366
AfaI	GTAC	2 cut(s)	327, 489
AfiI	CCNNNNNNNGG	2 cut(s)	358, 557
Alw21I	GWGCWC	3 cut(s)	68, 91, 549
Alw26I	GTCTC	1 cut(s)	98
Ama87I	CYCGRG	4 cut(s)	101, 206, 302, 542
AoxI	GGCC	2 cut(s)	3, 349
ApeKI	GCWGC	4 cut(s)	196, 211, 259, 421
ArsI	GACNNNNNNTTYG	2 cut(s)	63, 95
Asp718I	GGTACC	1 cut(s)	487
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	2 cut(s)	40, 559
AvaI	CYCGRG	4 cut(s)	101, 206, 302, 542
AvaII	GGWCC	1 cut(s)	79
AxyI	CCTNAGG	2 cut(s)	117, 483
BanI	GGYRCC	2 cut(s)	121, 487
BanII	GRGCYC	3 cut(s)	68, 91, 549
BbsI	GAAGAC	3 cut(s)	22, 89, 155
Bbv12I	GWGCWC	3 cut(s)	68, 91, 549
BbvI	GCAGC	4 cut(s)	183, 198, 246, 408
BccI	CCATC	7 cut(s)	159, 295, 381, 433, 457, 578, 605
BcoDI	GTCTC	1 cut(s)	98
BisI	GCNGC	4 cut(s)	197, 212, 260, 422
BlsI	GCNGC	4 cut(s)	198, 213, 261, 423
Bme18I	GGWCC	1 cut(s)	79
BmeT110I	CYCGRG	4 cut(s)	101, 206, 302, 542
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	2 cut(s)	123, 489
BpiI	GAAGAC	3 cut(s)	22, 89, 155
Bpu10I	CCTNAGC	4 cut(s)	126, 297, 390, 501
BpuEI	CTTGAG	1 cut(s)	338
BsaJI	CCNNGG	1 cut(s)	82
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bsc4I	CCNNNNNNNGG	2 cut(s)	358, 557
Bse1I	ACTGG	1 cut(s)	81
Bse21I	CCTNAGG	2 cut(s)	117, 483
Bse3DI	GCAATG	6 cut(s)	218, 290, 314, 383, 401, 428
BseDI	CCNNGG	1 cut(s)	82
BseGI	GGATG	3 cut(s)	449, 570, 597
BseLI	CCNNNNNNNGG	2 cut(s)	358, 557
BseMI	GCAATG	6 cut(s)	218, 290, 314, 383, 401, 428
BseMII	CTCAG	4 cut(s)	108, 117, 381, 474
BseNI	ACTGG	1 cut(s)	81
BseRI	GAGGAG	1 cut(s)	431
BseXI	GCAGC	4 cut(s)	183, 198, 246, 408
BseYI	CCCAGC	1 cut(s)	19
BshFI	GGCC	2 cut(s)	5, 351
BshNI	GGYRCC	2 cut(s)	121, 487
BsiHKAI	GWGCWC	3 cut(s)	68, 91, 549
BsiHKCI	CYCGRG	4 cut(s)	101, 206, 302, 542
BsiSI	CCGG	2 cut(s)	230, 506
BslI	CCNNNNNNNGG	2 cut(s)	358, 557
BsmAI	GTCTC	1 cut(s)	98
BsnI	GGCC	2 cut(s)	5, 351
BsoBI	CYCGRG	4 cut(s)	101, 206, 302, 542
Bsp1286I	GDGCHC	3 cut(s)	68, 91, 549
BspANI	GGCC	2 cut(s)	5, 351
BspCNI	CTCAG	4 cut(s)	109, 118, 382, 475
BspLI	GGNNCC	2 cut(s)	123, 489
BspT107I	GGYRCC	2 cut(s)	121, 487
BsrDI	GCAATG	6 cut(s)	218, 290, 314, 383, 401, 428
BsrI	ACTGG	1 cut(s)	81
BssECI	CCNNGG	1 cut(s)	82
BssT1I	CCWWGG	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	7 cut(s)	117, 126, 297, 390, 483, 501, 552
BstENI	CCTNNNNNAGG	1 cut(s)	555
BstF5I	GGATG	3 cut(s)	449, 570, 597
BstMAI	GTCTC	1 cut(s)	98
BstV1I	GCAGC	4 cut(s)	183, 198, 246, 408
BstV2I	GAAGAC	3 cut(s)	22, 89, 155
BstXI	CCANNNNNNTGG	1 cut(s)	76
Bsu36I	CCTNAGG	2 cut(s)	117, 483
BsuRI	GGCC	2 cut(s)	5, 351
BtsCI	GGATG	3 cut(s)	449, 570, 597
BtsI	GCAGTG	1 cut(s)	527
BtsIMutI	CAGTG	2 cut(s)	74, 527
Cac8I	GCNNGC	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	79
Csp6I	GTAC	2 cut(s)	326, 488
CviAII	CATG	1 cut(s)	323
CviQI	GTAC	2 cut(s)	326, 488
DdeI	CTNAG	7 cut(s)	117, 126, 297, 390, 483, 501, 552
Ecl136II	GAGCTC	3 cut(s)	66, 89, 547
Eco130I	CCWWGG	1 cut(s)	82
Eco147I	AGGCCT	1 cut(s)	351
Eco24I	GRGCYC	3 cut(s)	68, 91, 549
Eco47I	GGWCC	1 cut(s)	79
Eco53kI	GAGCTC	3 cut(s)	66, 89, 547
Eco57I	CTGAAG	1 cut(s)	366
Eco81I	CCTNAGG	2 cut(s)	117, 483
Eco88I	CYCGRG	4 cut(s)	101, 206, 302, 542
EcoICRI	GAGCTC	3 cut(s)	66, 89, 547
EcoNI	CCTNNNNNAGG	1 cut(s)	555
EcoT14I	CCWWGG	1 cut(s)	82
EcoT38I	GRGCYC	3 cut(s)	68, 91, 549
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	1 cut(s)	326
FaiI	YATR	2 cut(s)	62, 324
FatI	CATG	1 cut(s)	322
Fnu4HI	GCNGC	4 cut(s)	197, 212, 260, 422
FokI	GGATG	3 cut(s)	436, 557, 584
FriOI	GRGCYC	3 cut(s)	68, 91, 549
Fsp4HI	GCNGC	4 cut(s)	197, 212, 260, 422
GluI	GCNGC	4 cut(s)	197, 212, 260, 422
GsaI	CCCAGC	1 cut(s)	23
HaeIII	GGCC	2 cut(s)	5, 351
HapII	CCGG	2 cut(s)	230, 506
Hin1II	CATG	1 cut(s)	326
HinfI	GANTC	2 cut(s)	106, 460
HpaII	CCGG	2 cut(s)	230, 506
HphI	GGTGA	2 cut(s)	40, 559
Hpy188I	TCNGA	1 cut(s)	459
Hpy188III	TCNNGA	3 cut(s)	101, 103, 583
Hpy99I	CGWCG	1 cut(s)	15
HpyAV	CCTTC	4 cut(s)	44, 61, 341, 464
HpyF3I	CTNAG	7 cut(s)	117, 126, 297, 390, 483, 501, 552
Hsp92II	CATG	1 cut(s)	326
KpnI	GGTACC	1 cut(s)	491
LmnI	GCTCC	5 cut(s)	71, 86, 232, 418, 552
Lsp1109I	GCAGC	4 cut(s)	183, 198, 246, 408
MboII	GAAGA	4 cut(s)	22, 89, 146, 155
MhlI	GDGCHC	3 cut(s)	68, 91, 549
MluCI	AATT	3 cut(s)	143, 281, 516
MlyI	GAGTC	1 cut(s)	100
MmeI	TCCRAC	1 cut(s)	191
MnlI	CCTC	8 cut(s)	16, 112, 362, 409, 478, 534, 543, 590
MspA1I	CMGCKG	1 cut(s)	196
MspI	CCGG	2 cut(s)	230, 506
NlaIII	CATG	1 cut(s)	326
NlaIV	GGNNCC	2 cut(s)	123, 489
PaeR7I	CTCGAG	1 cut(s)	101
PceI	AGGCCT	1 cut(s)	351
PfeI	GAWTC	1 cut(s)	460
PkrI	GCNGC	4 cut(s)	198, 213, 261, 423
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Psp124BI	GAGCTC	3 cut(s)	68, 91, 549
PspFI	CCCAGC	1 cut(s)	19
PspN4I	GGNNCC	2 cut(s)	123, 489
PspPI	GGNCC	1 cut(s)	79
PvuII	CAGCTG	1 cut(s)	196
RsaI	GTAC	2 cut(s)	327, 489
RsaNI	GTAC	2 cut(s)	326, 488
SacI	GAGCTC	3 cut(s)	68, 91, 549
SatI	GCNGC	4 cut(s)	197, 212, 260, 422
Sau96I	GGNCC	1 cut(s)	79
SchI	GAGTC	1 cut(s)	100
SduI	GDGCHC	3 cut(s)	68, 91, 549
Sfr274I	CTCGAG	1 cut(s)	101
SinI	GGWCC	1 cut(s)	79
SlaI	CTCGAG	1 cut(s)	101
SmlI	CTYRAG	2 cut(s)	101, 353
SmoI	CTYRAG	2 cut(s)	101, 353
Sse9I	AATT	3 cut(s)	143, 281, 516
SseBI	AGGCCT	1 cut(s)	351
SstI	GAGCTC	3 cut(s)	68, 91, 549
StuI	AGGCCT	1 cut(s)	351
StyI	CCWWGG	1 cut(s)	82
TaqI	TCGA	1 cut(s)	102
TasI	AATT	3 cut(s)	143, 281, 516
TfiI	GAWTC	1 cut(s)	460
TscAI	CASTG	2 cut(s)	81, 534
TseI	GCWGC	4 cut(s)	196, 211, 259, 421
TspRI	CASTG	2 cut(s)	81, 534
VpaK11BI	GGWCC	1 cut(s)	79
XagI	CCTNNNNNAGG	1 cut(s)	555
XhoI	CTCGAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.