Rh6DG230600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0010606
Physical Location & Seq
Reverse (-)
41112964 .. 41113323
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG230600.1

Sequence Viewer

Length: 360 bp
ATGGCCTCTCGTCGCCTCCCAGCCTTTGTCTTCCCACTTTTGCTTTTCACTTTCTCGCTTATGTGCTCCAAAACACTGGTCCAAGGAGCTCGCTGTCTTCTCGAGACTCAAGTGCCTCAGGTGCCTGAGCTTCCAAAGCCTAAATTGCCCCATCTTTCTAGTCTTCCAACCTTGCCAAAGCCTGAACTGCCACAACTGCCGAAGCCCGAGCTGCCACCATTGCCAAAGCCGGAGCTTCCACAACTGCCAAAGCCAGAGTTGCCACATTTGCCTGAGCCAGAATTGCCATCATTGCCTAAGCCCAAGTTGCCACCATTGCTCATGTACCAACTTTGCCAAAGCCTGAAGGCCTCAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.24

Weight (kDa)

9.33

Isoelectric Point (pI)

73.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 121
AfaI GTAC 1 cut(s) 326
AluBI AGCT 4 cut(s) 89, 130, 211, 235
AluI AGCT 4 cut(s) 89, 130, 211, 235
Alw21I GWGCWC 2 cut(s) 68, 91
Alw26I GTCTC 1 cut(s) 98
Ama87I CYCGRG 2 cut(s) 101, 206
AoxI GGCC 2 cut(s) 3, 348
ApeKI GCWGC 1 cut(s) 211
ArsI GACNNNNNNTTYG 2 cut(s) 63, 95
AspS9I GGNCC 1 cut(s) 79
AvaI CYCGRG 2 cut(s) 101, 206
AvaII GGWCC 1 cut(s) 79
AxyI CCTNAGG 1 cut(s) 117
BanI GGYRCC 1 cut(s) 121
BanII GRGCYC 1 cut(s) 91
BbsI GAAGAC 3 cut(s) 22, 89, 155
Bbv12I GWGCWC 2 cut(s) 68, 91
BbvI GCAGC 1 cut(s) 198
BccI CCATC 2 cut(s) 159, 295
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 1 cut(s) 159
BisI GCNGC 1 cut(s) 212
BlsI GCNGC 1 cut(s) 213
Bme18I GGWCC 1 cut(s) 79
BmeT110I CYCGRG 2 cut(s) 101, 206
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 1 cut(s) 123
BpiI GAAGAC 3 cut(s) 22, 89, 155
Bpu10I CCTNAGC 3 cut(s) 126, 273, 297
BpuEI CTTGAG 2 cut(s) 93, 337
BsaJI CCNNGG 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 81
Bse21I CCTNAGG 1 cut(s) 117
Bse3DI GCAATG 3 cut(s) 218, 290, 314
BseDI CCNNGG 1 cut(s) 82
BseMI GCAATG 3 cut(s) 218, 290, 314
BseMII CTCAG 3 cut(s) 117, 131, 264
BseNI ACTGG 1 cut(s) 81
BseXI GCAGC 1 cut(s) 198
BseYI CCCAGC 1 cut(s) 19
BshFI GGCC 2 cut(s) 5, 350
BshNI GGYRCC 1 cut(s) 121
BsiHKAI GWGCWC 2 cut(s) 68, 91
BsiHKCI CYCGRG 2 cut(s) 101, 206
BsiSI CCGG 1 cut(s) 230
BsmAI GTCTC 1 cut(s) 98
BsnI GGCC 2 cut(s) 5, 350
BsoBI CYCGRG 2 cut(s) 101, 206
Bsp1286I GDGCHC 2 cut(s) 68, 91
BspANI GGCC 2 cut(s) 5, 350
BspCNI CTCAG 3 cut(s) 118, 130, 265
BspLI GGNNCC 1 cut(s) 123
BspT107I GGYRCC 1 cut(s) 121
BsrDI GCAATG 3 cut(s) 218, 290, 314
BsrI ACTGG 1 cut(s) 81
BssECI CCNNGG 1 cut(s) 82
BssT1I CCWWGG 1 cut(s) 82
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 4 cut(s) 117, 126, 273, 297
BstMAI GTCTC 1 cut(s) 98
BstV1I GCAGC 1 cut(s) 198
BstV2I GAAGAC 3 cut(s) 22, 89, 155
BstXI CCANNNNNNTGG 1 cut(s) 76
Bsu36I CCTNAGG 1 cut(s) 117
BsuRI GGCC 2 cut(s) 5, 350
BtsIMutI CAGTG 1 cut(s) 74
Cac8I GCNNGC 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 79
Csp6I GTAC 1 cut(s) 325
CviAII CATG 1 cut(s) 322
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 4 cut(s) 117, 126, 273, 297
Ecl136II GAGCTC 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 82
Eco147I AGGCCT 1 cut(s) 350
Eco24I GRGCYC 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 79
Eco53kI GAGCTC 1 cut(s) 89
Eco81I CCTNAGG 1 cut(s) 117
Eco88I CYCGRG 2 cut(s) 101, 206
EcoICRI GAGCTC 1 cut(s) 89
EcoT14I CCWWGG 1 cut(s) 82
EcoT38I GRGCYC 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 82
FaeI CATG 1 cut(s) 325
FaiI YATR 2 cut(s) 62, 323
FatI CATG 1 cut(s) 321
Fnu4HI GCNGC 1 cut(s) 212
FriOI GRGCYC 1 cut(s) 91
Fsp4HI GCNGC 1 cut(s) 212
FspBI CTAG 1 cut(s) 159
GluI GCNGC 1 cut(s) 212
GsaI CCCAGC 1 cut(s) 23
HaeIII GGCC 2 cut(s) 5, 350
HapII CCGG 1 cut(s) 230
Hin1II CATG 1 cut(s) 325
HinfI GANTC 1 cut(s) 106
HpaII CCGG 1 cut(s) 230
Hpy188III TCNNGA 2 cut(s) 101, 103
Hpy99I CGWCG 1 cut(s) 15
HpyAV CCTTC 1 cut(s) 340
HpyF3I CTNAG 4 cut(s) 117, 126, 273, 297
Hsp92II CATG 1 cut(s) 325
LmnI GCTCC 3 cut(s) 71, 86, 232
Lsp1109I GCAGC 1 cut(s) 198
MaeI CTAG 1 cut(s) 159
MboII GAAGA 3 cut(s) 22, 89, 155
MhlI GDGCHC 2 cut(s) 68, 91
MluCI AATT 2 cut(s) 143, 281
MlyI GAGTC 1 cut(s) 100
MmeI TCCRAC 1 cut(s) 191
MnlI CCTC 3 cut(s) 16, 26, 126
MspI CCGG 1 cut(s) 230
NlaIII CATG 1 cut(s) 325
NlaIV GGNNCC 1 cut(s) 123
PaeR7I CTCGAG 1 cut(s) 101
PceI AGGCCT 1 cut(s) 350
PkrI GCNGC 1 cut(s) 213
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
Psp124BI GAGCTC 1 cut(s) 91
PspFI CCCAGC 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 123
PspPI GGNCC 1 cut(s) 79
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
SacI GAGCTC 1 cut(s) 91
SatI GCNGC 1 cut(s) 212
Sau96I GGNCC 1 cut(s) 79
SchI GAGTC 1 cut(s) 100
SduI GDGCHC 2 cut(s) 68, 91
SetI ASST 6 cut(s) 91, 123, 132, 173, 213, 237
Sfr274I CTCGAG 1 cut(s) 101
SinI GGWCC 1 cut(s) 79
SlaI CTCGAG 1 cut(s) 101
SmlI CTYRAG 3 cut(s) 101, 108, 352
SmoI CTYRAG 3 cut(s) 101, 108, 352
Sse9I AATT 2 cut(s) 143, 281
SseBI AGGCCT 1 cut(s) 350
SspMI CTAG 1 cut(s) 159
SstI GAGCTC 1 cut(s) 91
StuI AGGCCT 1 cut(s) 350
StyI CCWWGG 1 cut(s) 82
TaqI TCGA 1 cut(s) 102
TasI AATT 2 cut(s) 143, 281
TscAI CASTG 1 cut(s) 81
TseI GCWGC 1 cut(s) 211
TspRI CASTG 1 cut(s) 81
VpaK11BI GGWCC 1 cut(s) 79
XhoI CTCGAG 1 cut(s) 101
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.