Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014203.1

Orthogroup ID

OG0010606

Physical Location & Seq

Genomic Coordinates Forward (+)

4665 .. 5270

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014203.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atggcctctcgtcgcttcccagcctttgtcttcccacttttgcttttcaccttctcgcttatgagctccaaaacactggtccaaggagctcgctgtcttctcgagactcacttgcctgaggtgcctgagcttccaaagcctgaattgccccatcttccaaccttgccaaagcctgaactgccacagctgccgaagcccgagctgccaccattgccaaagccggagcttccacaactgccgaagcccgagctgccacatttgcccaagcctgaattgccatcattgcctaagcccgagttgccaccattgccccatgtaccaactttgccaaagcctgaaggcctcaagttagctgaacaaccccatctcccaacattgcccgagcttccaccattgccaaagcaggaggagctgccatcattgccaaagcccgagctcccatcccttccgaatttcccaagttttccaaagcctgagttaccaacactacctaagccggaaatgccaactttacctccactgcctcatctccccgagctccctaagactggaactgggttgcccaccatcccaaccctcctgaaagacaaaaccatccttccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

201

Amino Acids

22.21

Weight (kDa)

7.03

Isoelectric Point (pI)

81.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010606)

Species	Orthologous Gene IDs
malus_domestica	MD11G1279500.v1.1 MD11G1279600.v1.1
prunus_persica	Prupe.8G068800_v2.0.a1 Prupe.8G069600_v2.0.a1 Prupe.8G069700_v2.0.a1
pyrus_communis	pycom11g24720
rosa_chinensis	RchiOBHm_Chr6g0279251
rosa_laevigata	RLG00000013153 RLG00000013154
rosa_multiflora	Rmu_sc0005273.1_g000001 Rmu_sc0014203.1_g000003
rosa_roxburghii	Rroxscaffold_7G00189020
rosa_rugosa	Rorug06G0123800 Rorug06G0123900 Rorug06G0124200
rosa_samantha	Rh6AG232300 Rh6BG237000 Rh6CG239000 Rh6DG230600 Rh6DG230800
rosa_wichuraiana	Rw6G020320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	451
AcuI	CTGAAG	1 cut(s)	357
AfaI	GTAC	1 cut(s)	318
AfiI	CCNNNNNNNGG	1 cut(s)	548
Alw21I	GWGCWC	4 cut(s)	68, 91, 438, 540
Alw26I	GTCTC	1 cut(s)	98
Ama87I	CYCGRG	7 cut(s)	101, 197, 245, 293, 380, 431, 533
AoxI	GGCC	2 cut(s)	3, 340
ApeKI	GCWGC	4 cut(s)	187, 202, 250, 412
ApoI	RAATTY	1 cut(s)	451
ArsI	GACNNNNNNTTYG	2 cut(s)	63, 95
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	1 cut(s)	40
AvaI	CYCGRG	7 cut(s)	101, 197, 245, 293, 380, 431, 533
AvaII	GGWCC	1 cut(s)	79
AxyI	CCTNAGG	1 cut(s)	117
BanI	GGYRCC	1 cut(s)	121
BanII	GRGCYC	4 cut(s)	68, 91, 438, 540
BbsI	GAAGAC	2 cut(s)	22, 89
Bbv12I	GWGCWC	4 cut(s)	68, 91, 438, 540
BbvI	GCAGC	4 cut(s)	174, 189, 237, 399
BccI	CCATC	7 cut(s)	159, 286, 372, 424, 448, 575, 602
BcoDI	GTCTC	1 cut(s)	98
BisI	GCNGC	4 cut(s)	188, 203, 251, 413
BlsI	GCNGC	4 cut(s)	189, 204, 252, 414
Bme18I	GGWCC	1 cut(s)	79
BmeT110I	CYCGRG	7 cut(s)	101, 197, 245, 293, 380, 431, 533
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	123
BmrI	ACTGGG	1 cut(s)	564
BmuI	ACTGGG	1 cut(s)	564
BpiI	GAAGAC	2 cut(s)	22, 89
Bpu10I	CCTNAGC	3 cut(s)	126, 288, 492
BpuEI	CTTGAG	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	82
BsaXI	ACNNNNNCTCC	4 cut(s)	351, 381, 499, 529
Bsc4I	CCNNNNNNNGG	1 cut(s)	548
Bse1I	ACTGG	3 cut(s)	81, 553, 559
Bse21I	CCTNAGG	1 cut(s)	117
Bse3DI	GCAATG	6 cut(s)	209, 281, 305, 374, 392, 419
BseDI	CCNNGG	1 cut(s)	82
BseGI	GGATG	3 cut(s)	440, 567, 594
BseLI	CCNNNNNNNGG	1 cut(s)	548
BseMI	GCAATG	6 cut(s)	209, 281, 305, 374, 392, 419
BseMII	CTCAG	3 cut(s)	108, 117, 465
BseNI	ACTGG	3 cut(s)	81, 553, 559
BseRI	GAGGAG	1 cut(s)	422
BseXI	GCAGC	4 cut(s)	174, 189, 237, 399
BseYI	CCCAGC	1 cut(s)	19
BshFI	GGCC	2 cut(s)	5, 342
BshNI	GGYRCC	1 cut(s)	121
BsiHKAI	GWGCWC	4 cut(s)	68, 91, 438, 540
BsiHKCI	CYCGRG	7 cut(s)	101, 197, 245, 293, 380, 431, 533
BsiSI	CCGG	2 cut(s)	221, 497
BslI	CCNNNNNNNGG	1 cut(s)	548
BsmAI	GTCTC	1 cut(s)	98
BsnI	GGCC	2 cut(s)	5, 342
BsoBI	CYCGRG	7 cut(s)	101, 197, 245, 293, 380, 431, 533
Bsp1286I	GDGCHC	4 cut(s)	68, 91, 438, 540
BspANI	GGCC	2 cut(s)	5, 342
BspCNI	CTCAG	3 cut(s)	109, 118, 466
BspLI	GGNNCC	1 cut(s)	123
BspT107I	GGYRCC	1 cut(s)	121
BsrDI	GCAATG	6 cut(s)	209, 281, 305, 374, 392, 419
BsrI	ACTGG	3 cut(s)	81, 553, 559
BssECI	CCNNGG	1 cut(s)	82
BssT1I	CCWWGG	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	6 cut(s)	117, 126, 288, 474, 492, 543
BstF5I	GGATG	3 cut(s)	440, 567, 594
BstMAI	GTCTC	1 cut(s)	98
BstV1I	GCAGC	4 cut(s)	174, 189, 237, 399
BstV2I	GAAGAC	2 cut(s)	22, 89
BstXI	CCANNNNNNTGG	1 cut(s)	76
Bsu36I	CCTNAGG	1 cut(s)	117
BsuRI	GGCC	2 cut(s)	5, 342
BtsCI	GGATG	3 cut(s)	440, 567, 594
BtsI	GCAGTG	1 cut(s)	518
BtsIMutI	CAGTG	2 cut(s)	74, 518
Cac8I	GCNNGC	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	317
CviAII	CATG	1 cut(s)	314
CviQI	GTAC	1 cut(s)	317
DdeI	CTNAG	6 cut(s)	117, 126, 288, 474, 492, 543
Ecl136II	GAGCTC	4 cut(s)	66, 89, 436, 538
Eco130I	CCWWGG	1 cut(s)	82
Eco147I	AGGCCT	1 cut(s)	342
Eco24I	GRGCYC	4 cut(s)	68, 91, 438, 540
Eco47I	GGWCC	1 cut(s)	79
Eco53kI	GAGCTC	4 cut(s)	66, 89, 436, 538
Eco57I	CTGAAG	1 cut(s)	357
Eco81I	CCTNAGG	1 cut(s)	117
Eco88I	CYCGRG	7 cut(s)	101, 197, 245, 293, 380, 431, 533
EcoICRI	GAGCTC	4 cut(s)	66, 89, 436, 538
EcoT14I	CCWWGG	1 cut(s)	82
EcoT38I	GRGCYC	4 cut(s)	68, 91, 438, 540
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	1 cut(s)	317
FaiI	YATR	2 cut(s)	62, 315
FatI	CATG	1 cut(s)	313
Fnu4HI	GCNGC	4 cut(s)	188, 203, 251, 413
FokI	GGATG	3 cut(s)	427, 554, 581
FriOI	GRGCYC	4 cut(s)	68, 91, 438, 540
Fsp4HI	GCNGC	4 cut(s)	188, 203, 251, 413
GluI	GCNGC	4 cut(s)	188, 203, 251, 413
GsaI	CCCAGC	1 cut(s)	23
HaeIII	GGCC	2 cut(s)	5, 342
HapII	CCGG	2 cut(s)	221, 497
Hin1II	CATG	1 cut(s)	317
HinfI	GANTC	1 cut(s)	106
HpaII	CCGG	2 cut(s)	221, 497
HphI	GGTGA	1 cut(s)	40
Hpy188I	TCNGA	1 cut(s)	450
Hpy188III	TCNNGA	3 cut(s)	101, 103, 580
Hpy99I	CGWCG	1 cut(s)	15
HpyAV	CCTTC	3 cut(s)	61, 332, 455
HpyF3I	CTNAG	6 cut(s)	117, 126, 288, 474, 492, 543
Hsp92II	CATG	1 cut(s)	317
LmnI	GCTCC	6 cut(s)	71, 86, 223, 409, 441, 543
Lsp1109I	GCAGC	4 cut(s)	174, 189, 237, 399
MaeIII	GTNAC	1 cut(s)	477
MboII	GAAGA	3 cut(s)	22, 89, 146
MhlI	GDGCHC	4 cut(s)	68, 91, 438, 540
MluCI	AATT	3 cut(s)	143, 272, 451
MlyI	GAGTC	1 cut(s)	100
MmeI	TCCRAC	1 cut(s)	182
MnlI	CCTC	7 cut(s)	16, 112, 353, 400, 525, 534, 587
MspA1I	CMGCKG	1 cut(s)	187
MspI	CCGG	2 cut(s)	221, 497
NlaIII	CATG	1 cut(s)	317
NlaIV	GGNNCC	1 cut(s)	123
PaeR7I	CTCGAG	1 cut(s)	101
PceI	AGGCCT	1 cut(s)	342
PkrI	GCNGC	4 cut(s)	189, 204, 252, 414
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Psp124BI	GAGCTC	4 cut(s)	68, 91, 438, 540
PspFI	CCCAGC	1 cut(s)	19
PspN4I	GGNNCC	1 cut(s)	123
PspPI	GGNCC	1 cut(s)	79
PvuII	CAGCTG	1 cut(s)	187
RsaI	GTAC	1 cut(s)	318
RsaNI	GTAC	1 cut(s)	317
SacI	GAGCTC	4 cut(s)	68, 91, 438, 540
SatI	GCNGC	4 cut(s)	188, 203, 251, 413
Sau96I	GGNCC	1 cut(s)	79
SchI	GAGTC	1 cut(s)	100
SduI	GDGCHC	4 cut(s)	68, 91, 438, 540
Sfr274I	CTCGAG	1 cut(s)	101
SinI	GGWCC	1 cut(s)	79
SlaI	CTCGAG	1 cut(s)	101
SmlI	CTYRAG	2 cut(s)	101, 344
SmoI	CTYRAG	2 cut(s)	101, 344
Sse9I	AATT	3 cut(s)	143, 272, 451
SseBI	AGGCCT	1 cut(s)	342
SstI	GAGCTC	4 cut(s)	68, 91, 438, 540
StuI	AGGCCT	1 cut(s)	342
StyI	CCWWGG	1 cut(s)	82
TaqI	TCGA	1 cut(s)	102
TasI	AATT	3 cut(s)	143, 272, 451
TscAI	CASTG	2 cut(s)	81, 525
TseI	GCWGC	4 cut(s)	187, 202, 250, 412
TspRI	CASTG	2 cut(s)	81, 525
VpaK11BI	GGWCC	1 cut(s)	79
XapI	RAATTY	1 cut(s)	451
XhoI	CTCGAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.