Prupe.8G069600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0010606
Physical Location & Seq
Reverse (-)
10258337 .. 10258783
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G069600.1

Sequence Viewer

Length: 447 bp
ATGGCCTTTCATGGCCTCCCGGCCTTCGTCTTTCCACTATTTTTGGTTTTTACCTTGTCCTCAATGAGCTCCAAAACAATGGTTGCAGGGGTTCGCATTCTTCTGGAGACTAACTCCGTCCCTCAAGTGCCCCAGCTTCCAAAGCCTGAGCTTCCACCACTTCCCACTCTCCCAACTTTGCCAAAGCCTAAGCTGCCCCAGTTGCCGAAGCCAGAACTGCCAACCTTGCCGAAGCCGGAGCTGCCAAAATTGCCGAAACCCGAATTGCCACCGGTACCTCATGTTCCAACTTTGCCAAAGCCTGAGTTGCCAAAGTTGCCAGAAATTCCACCTCTTCCCCATCTCCCAGCTGACTTACCTAAGCCCACATTGCCCTCCATCCCAACCCTCCCCAAGGACACACCCCTCCCTTCTCTCATTCCACCCCACAAAACCACCCTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.08

Weight (kDa)

9.65

Isoelectric Point (pI)

69.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 274
AccB1I GGYRCC 1 cut(s) 274
AcsI RAATTY 1 cut(s) 324
AfaI GTAC 1 cut(s) 276
AfiI CCNNNNNNNGG 1 cut(s) 394
AgeI ACCGGT 1 cut(s) 271
AluBI AGCT 6 cut(s) 69, 136, 151, 193, 241, 350
AluI AGCT 6 cut(s) 69, 136, 151, 193, 241, 350
Alw21I GWGCWC 1 cut(s) 71
Alw26I GTCTC 1 cut(s) 101
AoxI GGCC 3 cut(s) 3, 13, 21
ApeKI GCWGC 2 cut(s) 193, 241
ApoI RAATTY 1 cut(s) 324
AsiGI ACCGGT 1 cut(s) 271
Asp718I GGTACC 1 cut(s) 274
AsuC2I CCSGG 1 cut(s) 20
BaeGI GKGCMC 1 cut(s) 132
BanI GGYRCC 1 cut(s) 274
BanII GRGCYC 1 cut(s) 71
Bbv12I GWGCWC 1 cut(s) 71
BbvI GCAGC 2 cut(s) 180, 228
BccI CCATC 2 cut(s) 348, 386
BcnI CCSGG 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 101
BisI GCNGC 2 cut(s) 194, 242
BlsI GCNGC 2 cut(s) 195, 243
Bme1390I CCNGG 1 cut(s) 20
BmiI GGNNCC 1 cut(s) 276
BmrFI CCNGG 1 cut(s) 20
BmrI ACTGGG 1 cut(s) 193
BmuI ACTGGG 1 cut(s) 193
BplI GAGNNNNNCTC 2 cut(s) 98, 130
BpmI CTGGAG 1 cut(s) 125
Bpu10I CCTNAGC 3 cut(s) 147, 189, 360
BpuEI CTTGAG 1 cut(s) 108
BpuMI CCSGG 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 393
BsaWI WCCGGW 1 cut(s) 271
Bsc4I CCNNNNNNNGG 1 cut(s) 394
Bse118I RCCGGY 1 cut(s) 271
Bse1I ACTGG 1 cut(s) 199
Bse3DI GCAATG 1 cut(s) 368
BseDI CCNNGG 1 cut(s) 393
BseGI GGATG 1 cut(s) 378
BseLI CCNNNNNNNGG 1 cut(s) 394
BseMI GCAATG 1 cut(s) 368
BseMII CTCAG 2 cut(s) 138, 294
BseNI ACTGG 1 cut(s) 199
BseSI GKGCMC 1 cut(s) 132
BseXI GCAGC 2 cut(s) 180, 228
BseYI CCCAGC 2 cut(s) 132, 346
BshFI GGCC 3 cut(s) 5, 15, 23
BshNI GGYRCC 1 cut(s) 274
BshTI ACCGGT 1 cut(s) 271
BsiHKAI GWGCWC 1 cut(s) 71
BsiSI CCGG 3 cut(s) 20, 236, 272
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 394
BsmAI GTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 104
BsmI GAATGC 1 cut(s) 96
BsnI GGCC 3 cut(s) 5, 15, 23
Bsp1286I GDGCHC 2 cut(s) 71, 132
BspANI GGCC 3 cut(s) 5, 15, 23
BspCNI CTCAG 2 cut(s) 139, 295
BspLI GGNNCC 1 cut(s) 276
BspT107I GGYRCC 1 cut(s) 274
BsrDI GCAATG 1 cut(s) 368
BsrFI RCCGGY 1 cut(s) 271
BsrI ACTGG 1 cut(s) 199
BssAI RCCGGY 1 cut(s) 271
BssECI CCNNGG 1 cut(s) 393
BssT1I CCWWGG 1 cut(s) 393
Bst6I CTCTTC 1 cut(s) 339
BstDEI CTNAG 4 cut(s) 147, 189, 303, 360
BstENI CCTNNNNNAGG 1 cut(s) 392
BstF5I GGATG 1 cut(s) 378
BstMAI GTCTC 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 18
BstSLI GKGCMC 1 cut(s) 132
BstV1I GCAGC 2 cut(s) 180, 228
BstXI CCANNNNNNTGG 1 cut(s) 79
BsuRI GGCC 3 cut(s) 5, 15, 23
BtsCI GGATG 1 cut(s) 378
Cfr10I RCCGGY 1 cut(s) 271
Csp6I GTAC 1 cut(s) 275
CspAI ACCGGT 1 cut(s) 271
CspCI CAANNNNNGTGG 2 cut(s) 24, 59
CviAII CATG 2 cut(s) 11, 281
CviQI GTAC 1 cut(s) 275
DdeI CTNAG 4 cut(s) 147, 189, 303, 360
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Ecl136II GAGCTC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 393
Eco24I GRGCYC 1 cut(s) 71
Eco53kI GAGCTC 1 cut(s) 69
EcoICRI GAGCTC 1 cut(s) 69
EcoNI CCTNNNNNAGG 1 cut(s) 392
EcoT14I CCWWGG 1 cut(s) 393
EcoT38I GRGCYC 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 393
FaeI CATG 2 cut(s) 14, 284
FaiI YATR 2 cut(s) 12, 282
FaqI GGGAC 1 cut(s) 104
FatI CATG 2 cut(s) 10, 280
Fnu4HI GCNGC 2 cut(s) 194, 242
FokI GGATG 1 cut(s) 365
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 2 cut(s) 194, 242
GluI GCNGC 2 cut(s) 194, 242
GsaI CCCAGC 2 cut(s) 136, 350
GsuI CTGGAG 1 cut(s) 125
HaeIII GGCC 3 cut(s) 5, 15, 23
HapII CCGG 3 cut(s) 20, 236, 272
Hin1II CATG 2 cut(s) 14, 284
HpaII CCGG 3 cut(s) 20, 236, 272
Hpy188III TCNNGA 1 cut(s) 104
HpyAV CCTTC 2 cut(s) 34, 420
HpyCH4V TGCA 1 cut(s) 86
HpyF3I CTNAG 4 cut(s) 147, 189, 303, 360
Hsp92II CATG 2 cut(s) 14, 284
KpnI GGTACC 1 cut(s) 278
LmnI GCTCC 2 cut(s) 74, 238
Lsp1109I GCAGC 2 cut(s) 180, 228
MboII GAAGA 2 cut(s) 92, 326
MhlI GDGCHC 2 cut(s) 71, 132
MluCI AATT 3 cut(s) 248, 263, 324
MmeI TCCRAC 1 cut(s) 311
MnlI CCTC 8 cut(s) 26, 70, 132, 288, 342, 385, 398, 416
MspA1I CMGCKG 1 cut(s) 350
MspI CCGG 3 cut(s) 20, 236, 272
MspR9I CCNGG 1 cut(s) 20
Mva1269I GAATGC 1 cut(s) 96
NciI CCSGG 1 cut(s) 20
NlaIII CATG 2 cut(s) 14, 284
NlaIV GGNNCC 1 cut(s) 276
PctI GAATGC 1 cut(s) 96
PinAI ACCGGT 1 cut(s) 271
PkrI GCNGC 2 cut(s) 195, 243
Psp124BI GAGCTC 1 cut(s) 71
PspFI CCCAGC 2 cut(s) 132, 346
PspN4I GGNNCC 1 cut(s) 276
PsrI GAACNNNNNNTAC 2 cut(s) 267, 299
PvuII CAGCTG 1 cut(s) 350
RsaI GTAC 1 cut(s) 276
RsaNI GTAC 1 cut(s) 275
SacI GAGCTC 1 cut(s) 71
SatI GCNGC 2 cut(s) 194, 242
ScrFI CCNGG 1 cut(s) 20
SduI GDGCHC 2 cut(s) 71, 132
SmlI CTYRAG 1 cut(s) 123
SmoI CTYRAG 1 cut(s) 123
Sse9I AATT 3 cut(s) 248, 263, 324
SstI GAGCTC 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 18
StyI CCWWGG 1 cut(s) 393
TasI AATT 3 cut(s) 248, 263, 324
TseI GCWGC 2 cut(s) 193, 241
TspGWI ACGGA 1 cut(s) 106
XagI CCTNNNNNAGG 1 cut(s) 392
XapI RAATTY 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.