Basic Information
Type: gene
Biological Identity
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
17187571 .. 17188583
Rorug06G0123900.1
Length: 210 bp
ATGAAGAGTTTCCATTTAACCGCAACACTTGTGAATTTGTTTCAGATTTCTGAACTGCTGGTCAATGTTACAAAGCATGTTTTACAGCCAAAGTATGAGATACTTACGGCTGAAGAAAAGAAACATCTGCTAAGGAAGTACAAGTTGGAAGACAAGAAGATCGAGCAACCACTTATGAGAAATTTTGTATCAAACTGCTCAAGGCTTTGA
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.
Protein Analysis
9.61
Isoelectric Point (pI)
| Domain Name |
Pfam ID |
Position |
E-value |
Description |
| RNA_pol_Rpb5_C |
PF01191 |
21 - 54 |
3.4e-09 |
RNA polymerase Rpb5, C-terminal domain |
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...
Gene Family Tree
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Publication-ready
Orthologous Genes
(Group: OG0010606)
Restriction Enzyme Sites
| Enzyme |
Recognition Site |
Cut Count |
Positions (bp) |
| AciI |
CCGC |
1 cut(s)
|
21 |
| AcsI |
RAATTY |
2 cut(s)
|
34, 181 |
| AcuI |
CTGAAG |
1 cut(s)
|
132 |
| AfaI |
GTAC |
1 cut(s)
|
140 |
| AjuI |
GAANNNNNNNTTGG |
2 cut(s)
|
128, 160 |
| ApoI |
RAATTY |
2 cut(s)
|
34, 181 |
| Asp700I |
GAANNNNTTC |
1 cut(s)
|
8 |
| BbsI |
GAAGAC |
1 cut(s)
|
156 |
| BceAI |
ACGGC |
1 cut(s)
|
123 |
| BpiI |
GAAGAC |
1 cut(s)
|
156 |
| Bpu10I |
CCTNAGC |
1 cut(s)
|
131 |
| BpuEI |
CTTGAG |
1 cut(s)
|
184 |
| Bsp143I |
GATC |
1 cut(s)
|
159 |
| BspACI |
CCGC |
1 cut(s)
|
21 |
| BssMI |
GATC |
1 cut(s)
|
159 |
| BstDEI |
CTNAG |
1 cut(s)
|
131 |
| BstKTI |
GATC |
1 cut(s)
|
162 |
| BstMBI |
GATC |
1 cut(s)
|
159 |
| BstNSI |
RCATGY |
1 cut(s)
|
80 |
| BstV2I |
GAAGAC |
1 cut(s)
|
156 |
| Csp6I |
GTAC |
1 cut(s)
|
139 |
| CviAII |
CATG |
1 cut(s)
|
77 |
| CviJI |
RGCY |
3 cut(s)
|
88, 110, 205 |
| CviKI_1 |
RGCY |
3 cut(s)
|
88, 110, 205 |
| CviQI |
GTAC |
1 cut(s)
|
139 |
| DdeI |
CTNAG |
1 cut(s)
|
131 |
| DpnI |
GATC |
1 cut(s)
|
161 |
| DpnII |
GATC |
1 cut(s)
|
159 |
| Eco57I |
CTGAAG |
1 cut(s)
|
132 |
| FaeI |
CATG |
1 cut(s)
|
80 |
| FaiI |
YATR |
3 cut(s)
|
78, 96, 176 |
| FatI |
CATG |
1 cut(s)
|
76 |
| FspEI |
CC |
9 cut(s)
|
26, 34, 44, 92, 102, 118, 131, 183, 187 |
| Hin1II |
CATG |
1 cut(s)
|
80 |
| Hpy188I |
TCNGA |
2 cut(s)
|
45, 52 |
| HpyF3I |
CTNAG |
1 cut(s)
|
131 |
| Hsp92II |
CATG |
1 cut(s)
|
80 |
| Kzo9I |
GATC |
1 cut(s)
|
159 |
| LpnPI |
CCDG |
1 cut(s)
|
44 |
| MaeIII |
GTNAC |
1 cut(s)
|
67 |
| MalI |
GATC |
1 cut(s)
|
161 |
| MboI |
GATC |
1 cut(s)
|
159 |
| MboII |
GAAGA |
4 cut(s)
|
16, 125, 161, 169 |
| MluCI |
AATT |
2 cut(s)
|
34, 181 |
| MmeI |
TCCRAC |
1 cut(s)
|
126 |
| MroXI |
GAANNNNTTC |
1 cut(s)
|
8 |
| MseI |
TTAA |
1 cut(s)
|
17 |
| NdeII |
GATC |
1 cut(s)
|
159 |
| NlaIII |
CATG |
1 cut(s)
|
80 |
| NspI |
RCATGY |
1 cut(s)
|
80 |
| PdmI |
GAANNNNTTC |
1 cut(s)
|
8 |
| RsaI |
GTAC |
1 cut(s)
|
140 |
| RsaNI |
GTAC |
1 cut(s)
|
139 |
| SaqAI |
TTAA |
1 cut(s)
|
17 |
| Sau3AI |
GATC |
1 cut(s)
|
159 |
| SgeI |
CNNG |
6 cut(s)
|
41, 71, 89, 154, 166, 175 |
| SmlI |
CTYRAG |
1 cut(s)
|
199 |
| SmoI |
CTYRAG |
1 cut(s)
|
199 |
| Sse9I |
AATT |
2 cut(s)
|
34, 181 |
| SsiI |
CCGC |
1 cut(s)
|
21 |
| TaqI |
TCGA |
1 cut(s)
|
162 |
| TasI |
AATT |
2 cut(s)
|
34, 181 |
| TatI |
WGTACW |
1 cut(s)
|
138 |
| Tru1I |
TTAA |
1 cut(s)
|
17 |
| Tru9I |
TTAA |
1 cut(s)
|
17 |
| TspDTI |
ATGAA |
1 cut(s)
|
17 |
| XapI |
RAATTY |
2 cut(s)
|
34, 181 |
| XceI |
RCATGY |
1 cut(s)
|
80 |
| XmnI |
GAANNNNTTC |
1 cut(s)
|
8 |
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.