Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0010606

Physical Location & Seq

Genomic Coordinates Forward (+)

39726338 .. 39726910

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1279600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGTGGTCGATCATGGCCTCCGCCCGGCTTCCGTCTTACCACTGCTTCTGCTCTTTACTTTCTCACTTATGAGCTCCGAAAAAATGGTTGTGGGGGCTCGCTTTCTTCTGGAGACTTCCTTGCCTCAAGTGCCGGAGCTTCCGAAGCCTGAGCTGCCACCACTTCCCAATTTCCCGTCGCTGCCAAAGCCTGAGCTGCCGCCATTGCCTAAACCCGAATTGCCAAAGTTTCCAAAGGCTGAGCTGCCACATGAGCTTCCAAAGCCTGAGCTGCCTCGGCTACCTAAAGCCGAAAATGCCCCAAAGTCTGAAGGCTCCAAGTTGGCTGAAGTACCCCATGTTCCAACCTTGCCCGAGGTGCCTCAGCTTCCAAAGCCTGAATTGTCACCACTTCCCAATTTCCCGACTTTTCCGAAGCCTGAGCTGCCACCATTGCCTAAGCCTGAATTGCCAACTCTCCCCCATCTTCCAGCTGAGCTACCAATGCCTACACTGCCTTCCATCCCAACCCTCCCCAAGGGCACACCCATCCCTTCACTCGCCCCACCTGAACACAAATCCACCCTTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

20.68

Weight (kDa)

6.53

Isoelectric Point (pI)

72.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010606)

Species	Orthologous Gene IDs
malus_domestica	MD11G1279500.v1.1 MD11G1279600.v1.1
prunus_persica	Prupe.8G068800_v2.0.a1 Prupe.8G069600_v2.0.a1 Prupe.8G069700_v2.0.a1
pyrus_communis	pycom11g24720
rosa_chinensis	RchiOBHm_Chr6g0279251
rosa_laevigata	RLG00000013153 RLG00000013154
rosa_multiflora	Rmu_sc0005273.1_g000001 Rmu_sc0014203.1_g000003
rosa_roxburghii	Rroxscaffold_7G00189020
rosa_rugosa	Rorug06G0123800 Rorug06G0123900 Rorug06G0124200
rosa_samantha	Rh6AG232300 Rh6BG237000 Rh6CG239000 Rh6DG230600 Rh6DG230800
rosa_wichuraiana	Rw6G020320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	358
AciI	CCGC	2 cut(s)	22, 200
AcuI	CTGAAG	2 cut(s)	330, 348
AfaI	GTAC	1 cut(s)	333
AfiI	CCNNNNNNNGG	2 cut(s)	25, 517
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	1 cut(s)	107
Ama87I	CYCGRG	1 cut(s)	353
AoxI	GGCC	1 cut(s)	16
ApeKI	GCWGC	6 cut(s)	154, 181, 196, 244, 271, 424
AsuC2I	CCSGG	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	378
AvaI	CYCGRG	1 cut(s)	353
BaeGI	GKGCMC	1 cut(s)	524
BanI	GGYRCC	1 cut(s)	358
BanII	GRGCYC	2 cut(s)	77, 100
Bbv12I	GWGCWC	1 cut(s)	77
BbvCI	CCTCAGC	1 cut(s)	363
BbvI	GCAGC	6 cut(s)	141, 168, 183, 231, 258, 411
BccI	CCATC	3 cut(s)	471, 509, 536
BcnI	CCSGG	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	107
BisI	GCNGC	7 cut(s)	155, 182, 197, 200, 245, 272, 425
BlpI	GCTNAGC	2 cut(s)	240, 474
BlsI	GCNGC	7 cut(s)	156, 183, 198, 201, 246, 273, 426
Bme1390I	CCNGG	1 cut(s)	26
BmeT110I	CYCGRG	1 cut(s)	353
BmiI	GGNNCC	2 cut(s)	316, 360
BmrFI	CCNGG	1 cut(s)	26
BpmI	CTGGAG	1 cut(s)	131
Bpu10I	CCTNAGC	6 cut(s)	150, 192, 267, 363, 420, 438
Bpu1102I	GCTNAGC	2 cut(s)	240, 474
BpuEI	CTTGAG	1 cut(s)	111
BpuMI	CCSGG	1 cut(s)	26
BsaJI	CCNNGG	3 cut(s)	275, 354, 516
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 517
Bse3DI	GCAATG	2 cut(s)	203, 431
BseDI	CCNNGG	3 cut(s)	275, 354, 516
BseGI	GGATG	2 cut(s)	501, 528
BseLI	CCNNNNNNNGG	2 cut(s)	25, 517
BseMI	GCAATG	2 cut(s)	203, 431
BseMII	CTCAG	7 cut(s)	141, 183, 231, 258, 377, 411, 465
BseSI	GKGCMC	1 cut(s)	524
BseXI	GCAGC	6 cut(s)	141, 168, 183, 231, 258, 411
BshFI	GGCC	1 cut(s)	18
BshNI	GGYRCC	1 cut(s)	358
BsiHKAI	GWGCWC	1 cut(s)	77
BsiHKCI	CYCGRG	1 cut(s)	353
BsiSI	CCGG	2 cut(s)	26, 134
BslI	CCNNNNNNNGG	2 cut(s)	25, 517
BsmAI	GTCTC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	18
BsoBI	CYCGRG	1 cut(s)	353
Bsp1286I	GDGCHC	3 cut(s)	77, 100, 524
Bsp143I	GATC	1 cut(s)	10
Bsp1720I	GCTNAGC	2 cut(s)	240, 474
BspACI	CCGC	2 cut(s)	22, 200
BspANI	GGCC	1 cut(s)	18
BspCNI	CTCAG	7 cut(s)	142, 184, 232, 259, 376, 412, 466
BspLI	GGNNCC	2 cut(s)	316, 360
BspT107I	GGYRCC	1 cut(s)	358
BsrDI	GCAATG	2 cut(s)	203, 431
BssECI	CCNNGG	3 cut(s)	275, 354, 516
BssMI	GATC	1 cut(s)	10
BssT1I	CCWWGG	1 cut(s)	516
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	8 cut(s)	150, 192, 240, 267, 363, 420, 438, 474
BstENI	CCTNNNNNAGG	1 cut(s)	515
BstF5I	GGATG	2 cut(s)	501, 528
BstKTI	GATC	1 cut(s)	13
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	1 cut(s)	10
BstSCI	CCNGG	1 cut(s)	24
BstSLI	GKGCMC	1 cut(s)	524
BstV1I	GCAGC	6 cut(s)	141, 168, 183, 231, 258, 411
BsuRI	GGCC	1 cut(s)	18
BtsCI	GGATG	2 cut(s)	501, 528
BtsI	GCAGTG	2 cut(s)	41, 491
BtsIMutI	CAGTG	2 cut(s)	41, 491
Cac8I	GCNNGC	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	332
CviAII	CATG	3 cut(s)	14, 251, 338
CviQI	GTAC	1 cut(s)	332
DdeI	CTNAG	8 cut(s)	150, 192, 240, 267, 363, 420, 438, 474
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
EciI	GGCGGA	1 cut(s)	11
Ecl136II	GAGCTC	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	516
Eco24I	GRGCYC	2 cut(s)	77, 100
Eco53kI	GAGCTC	1 cut(s)	75
Eco57I	CTGAAG	2 cut(s)	330, 348
Eco88I	CYCGRG	1 cut(s)	353
EcoICRI	GAGCTC	1 cut(s)	75
EcoNI	CCTNNNNNAGG	1 cut(s)	515
EcoT14I	CCWWGG	1 cut(s)	516
EcoT38I	GRGCYC	2 cut(s)	77, 100
ErhI	CCWWGG	1 cut(s)	516
FaeI	CATG	3 cut(s)	17, 254, 341
FaiI	YATR	4 cut(s)	15, 71, 252, 339
FatI	CATG	3 cut(s)	13, 250, 337
Fnu4HI	GCNGC	7 cut(s)	155, 182, 197, 200, 245, 272, 425
FokI	GGATG	2 cut(s)	488, 515
FriOI	GRGCYC	2 cut(s)	77, 100
Fsp4HI	GCNGC	7 cut(s)	155, 182, 197, 200, 245, 272, 425
GluI	GCNGC	7 cut(s)	155, 182, 197, 200, 245, 272, 425
GsuI	CTGGAG	1 cut(s)	131
HaeIII	GGCC	1 cut(s)	18
HapII	CCGG	2 cut(s)	26, 134
Hin1II	CATG	3 cut(s)	17, 254, 341
HpaII	CCGG	2 cut(s)	26, 134
HphI	GGTGA	1 cut(s)	378
Hpy188I	TCNGA	4 cut(s)	79, 144, 310, 414
Hpy188III	TCNNGA	2 cut(s)	110, 403
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	3 cut(s)	305, 507, 543
HpyF3I	CTNAG	8 cut(s)	150, 192, 240, 267, 363, 420, 438, 474
Hsp92II	CATG	3 cut(s)	17, 254, 341
Kzo9I	GATC	1 cut(s)	10
LmnI	GCTCC	3 cut(s)	80, 136, 320
Lsp1109I	GCAGC	6 cut(s)	141, 168, 183, 231, 258, 411
MaeIII	GTNAC	1 cut(s)	384
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MboII	GAAGA	2 cut(s)	98, 458
MhlI	GDGCHC	3 cut(s)	77, 100, 524
MluCI	AATT	5 cut(s)	169, 218, 380, 397, 446
MmeI	TCCRAC	1 cut(s)	368
MnlI	CCTC	6 cut(s)	29, 135, 285, 349, 372, 521
MspA1I	CMGCKG	1 cut(s)	473
MspI	CCGG	2 cut(s)	26, 134
MspR9I	CCNGG	1 cut(s)	26
NciI	CCSGG	1 cut(s)	26
NdeII	GATC	1 cut(s)	10
NlaIII	CATG	3 cut(s)	17, 254, 341
NlaIV	GGNNCC	2 cut(s)	316, 360
NmeAIII	GCCGAG	1 cut(s)	256
NmuCI	GTSAC	1 cut(s)	384
PkrI	GCNGC	7 cut(s)	156, 183, 198, 201, 246, 273, 426
Psp124BI	GAGCTC	1 cut(s)	77
PspN4I	GGNNCC	2 cut(s)	316, 360
PsrI	GAACNNNNNNTAC	2 cut(s)	324, 356
PvuII	CAGCTG	1 cut(s)	473
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
SacI	GAGCTC	1 cut(s)	77
SatI	GCNGC	7 cut(s)	155, 182, 197, 200, 245, 272, 425
Sau3AI	GATC	1 cut(s)	10
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	3 cut(s)	77, 100, 524
SmlI	CTYRAG	1 cut(s)	126
SmoI	CTYRAG	1 cut(s)	126
Sse9I	AATT	5 cut(s)	169, 218, 380, 397, 446
SsiI	CCGC	2 cut(s)	22, 200
SstI	GAGCTC	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	24
StyI	CCWWGG	1 cut(s)	516
TaqI	TCGA	1 cut(s)	9
TasI	AATT	5 cut(s)	169, 218, 380, 397, 446
TauI	GCSGC	1 cut(s)	202
TscAI	CASTG	2 cut(s)	48, 498
TseFI	GTSAC	1 cut(s)	384
TseI	GCWGC	6 cut(s)	154, 181, 196, 244, 271, 424
Tsp45I	GTSAC	1 cut(s)	384
TspGWI	ACGGA	1 cut(s)	22
TspRI	CASTG	2 cut(s)	48, 498
XagI	CCTNNNNNAGG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.