Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0010606

Physical Location & Seq

Genomic Coordinates Reverse (-)

41617504 .. 41618049

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG232300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAGCTCCAAAACACTGGTCCAAGGAGCTCGCTGTCTTCTCGAGACTCACTTGCCTGAGGTGCCTGAGCTTCCAAAGCCTGAATTGCCCCATCTTCCAACCTTGCCAAAGCCTGAACTGCCACAGCTGCCGAAGCCCGAGCTGCCACCATTGCCAAAGCCGGAGCTTCCACAACTGCCAAAGCCAGAGCTGCCACATTTGCCCAAGCCTGAATTGCCATCATTGCCTAAGCCCGAGTTGCCACCATTGCCCCATGTACCAACTTTGCCAAAGCCTGAAGGCCTCAAGTTAGCTGAACAACCCCATCTCCCAACATTGCCCGAGCTTCCACCATTGCCAAAGCAGGAGGAGCTGCCATCATTGCCAAAGCCTGAACTCCCATCCCTTCCGAATTTCCCAAGTTTTCCAAAGCCTGAGTTGCCAACACTACCTAAGCCGGAAATGCCAACTTTACCTCCACTGCCTCATCTCCCCGAGCTCCCTAAGACTGGAACTGGATTGCCCACCATCCCAACCCTCCTGAAAGACAAAACCATCCTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

19.87

Weight (kDa)

6.31

Isoelectric Point (pI)

80.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010606)

Species	Orthologous Gene IDs
malus_domestica	MD11G1279500.v1.1 MD11G1279600.v1.1
prunus_persica	Prupe.8G068800_v2.0.a1 Prupe.8G069600_v2.0.a1 Prupe.8G069700_v2.0.a1
pyrus_communis	pycom11g24720
rosa_chinensis	RchiOBHm_Chr6g0279251
rosa_laevigata	RLG00000013153 RLG00000013154
rosa_multiflora	Rmu_sc0005273.1_g000001 Rmu_sc0014203.1_g000003
rosa_roxburghii	Rroxscaffold_7G00189020
rosa_rugosa	Rorug06G0123800 Rorug06G0123900 Rorug06G0124200
rosa_samantha	Rh6AG232300 Rh6BG237000 Rh6CG239000 Rh6DG230600 Rh6DG230800
rosa_wichuraiana	Rw6G020320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	61
AcsI	RAATTY	1 cut(s)	391
AcuI	CTGAAG	1 cut(s)	297
AfaI	GTAC	1 cut(s)	258
AfiI	CCNNNNNNNGG	1 cut(s)	488
Alw21I	GWGCWC	3 cut(s)	8, 31, 480
Alw26I	GTCTC	1 cut(s)	38
Ama87I	CYCGRG	5 cut(s)	41, 137, 233, 320, 473
AoxI	GGCC	1 cut(s)	280
ApeKI	GCWGC	4 cut(s)	127, 142, 190, 352
ApoI	RAATTY	1 cut(s)	391
ArsI	GACNNNNNNTTYG	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	19
AvaI	CYCGRG	5 cut(s)	41, 137, 233, 320, 473
AvaII	GGWCC	1 cut(s)	19
AxyI	CCTNAGG	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	61
BanII	GRGCYC	3 cut(s)	8, 31, 480
BbsI	GAAGAC	1 cut(s)	29
Bbv12I	GWGCWC	3 cut(s)	8, 31, 480
BbvI	GCAGC	4 cut(s)	114, 129, 177, 339
BccI	CCATC	7 cut(s)	99, 226, 312, 364, 388, 515, 542
BcoDI	GTCTC	1 cut(s)	38
BisI	GCNGC	4 cut(s)	128, 143, 191, 353
BlsI	GCNGC	4 cut(s)	129, 144, 192, 354
Bme18I	GGWCC	1 cut(s)	19
BmeT110I	CYCGRG	5 cut(s)	41, 137, 233, 320, 473
BmgT120I	GGNCC	1 cut(s)	19
BmiI	GGNNCC	1 cut(s)	63
BpiI	GAAGAC	1 cut(s)	29
Bpu10I	CCTNAGC	3 cut(s)	66, 228, 432
BpuEI	CTTGAG	1 cut(s)	269
BsaJI	CCNNGG	1 cut(s)	22
BsaXI	ACNNNNNCTCC	4 cut(s)	291, 321, 439, 469
Bsc4I	CCNNNNNNNGG	1 cut(s)	488
Bse1I	ACTGG	3 cut(s)	21, 493, 499
Bse21I	CCTNAGG	1 cut(s)	57
Bse3DI	GCAATG	6 cut(s)	149, 221, 245, 314, 332, 359
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	3 cut(s)	380, 507, 534
BseLI	CCNNNNNNNGG	1 cut(s)	488
BseMI	GCAATG	6 cut(s)	149, 221, 245, 314, 332, 359
BseMII	CTCAG	3 cut(s)	48, 57, 405
BseNI	ACTGG	3 cut(s)	21, 493, 499
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	4 cut(s)	114, 129, 177, 339
BshFI	GGCC	1 cut(s)	282
BshNI	GGYRCC	1 cut(s)	61
BsiHKAI	GWGCWC	3 cut(s)	8, 31, 480
BsiHKCI	CYCGRG	5 cut(s)	41, 137, 233, 320, 473
BsiSI	CCGG	2 cut(s)	161, 437
BslI	CCNNNNNNNGG	1 cut(s)	488
BsmAI	GTCTC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	282
BsoBI	CYCGRG	5 cut(s)	41, 137, 233, 320, 473
Bsp1286I	GDGCHC	3 cut(s)	8, 31, 480
BspANI	GGCC	1 cut(s)	282
BspCNI	CTCAG	3 cut(s)	49, 58, 406
BspLI	GGNNCC	1 cut(s)	63
BspT107I	GGYRCC	1 cut(s)	61
BsrDI	GCAATG	6 cut(s)	149, 221, 245, 314, 332, 359
BsrI	ACTGG	3 cut(s)	21, 493, 499
BssECI	CCNNGG	1 cut(s)	22
BssT1I	CCWWGG	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	31
BstDEI	CTNAG	6 cut(s)	57, 66, 228, 414, 432, 483
BstF5I	GGATG	3 cut(s)	380, 507, 534
BstMAI	GTCTC	1 cut(s)	38
BstV1I	GCAGC	4 cut(s)	114, 129, 177, 339
BstV2I	GAAGAC	1 cut(s)	29
BstXI	CCANNNNNNTGG	1 cut(s)	16
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	282
BtsCI	GGATG	3 cut(s)	380, 507, 534
BtsI	GCAGTG	1 cut(s)	458
BtsIMutI	CAGTG	2 cut(s)	14, 458
Cac8I	GCNNGC	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	19
Csp6I	GTAC	1 cut(s)	257
CviAII	CATG	1 cut(s)	254
CviQI	GTAC	1 cut(s)	257
DdeI	CTNAG	6 cut(s)	57, 66, 228, 414, 432, 483
Ecl136II	GAGCTC	3 cut(s)	6, 29, 478
Eco130I	CCWWGG	1 cut(s)	22
Eco147I	AGGCCT	1 cut(s)	282
Eco24I	GRGCYC	3 cut(s)	8, 31, 480
Eco47I	GGWCC	1 cut(s)	19
Eco53kI	GAGCTC	3 cut(s)	6, 29, 478
Eco57I	CTGAAG	1 cut(s)	297
Eco81I	CCTNAGG	1 cut(s)	57
Eco88I	CYCGRG	5 cut(s)	41, 137, 233, 320, 473
EcoICRI	GAGCTC	3 cut(s)	6, 29, 478
EcoT14I	CCWWGG	1 cut(s)	22
EcoT38I	GRGCYC	3 cut(s)	8, 31, 480
ErhI	CCWWGG	1 cut(s)	22
FaeI	CATG	1 cut(s)	257
FaiI	YATR	1 cut(s)	255
FatI	CATG	1 cut(s)	253
Fnu4HI	GCNGC	4 cut(s)	128, 143, 191, 353
FokI	GGATG	3 cut(s)	367, 494, 521
FriOI	GRGCYC	3 cut(s)	8, 31, 480
Fsp4HI	GCNGC	4 cut(s)	128, 143, 191, 353
GluI	GCNGC	4 cut(s)	128, 143, 191, 353
HaeIII	GGCC	1 cut(s)	282
HapII	CCGG	2 cut(s)	161, 437
Hin1II	CATG	1 cut(s)	257
HinfI	GANTC	1 cut(s)	46
HpaII	CCGG	2 cut(s)	161, 437
Hpy188I	TCNGA	1 cut(s)	390
Hpy188III	TCNNGA	3 cut(s)	41, 43, 520
HpyAV	CCTTC	2 cut(s)	272, 395
HpyF3I	CTNAG	6 cut(s)	57, 66, 228, 414, 432, 483
Hsp92II	CATG	1 cut(s)	257
LmnI	GCTCC	5 cut(s)	11, 26, 163, 349, 483
Lsp1109I	GCAGC	4 cut(s)	114, 129, 177, 339
MboII	GAAGA	2 cut(s)	29, 86
MhlI	GDGCHC	3 cut(s)	8, 31, 480
MluCI	AATT	3 cut(s)	83, 212, 391
MlyI	GAGTC	1 cut(s)	40
MmeI	TCCRAC	1 cut(s)	122
MnlI	CCTC	6 cut(s)	52, 293, 340, 465, 474, 527
MspA1I	CMGCKG	1 cut(s)	127
MspI	CCGG	2 cut(s)	161, 437
NlaIII	CATG	1 cut(s)	257
NlaIV	GGNNCC	1 cut(s)	63
PaeR7I	CTCGAG	1 cut(s)	41
PceI	AGGCCT	1 cut(s)	282
PkrI	GCNGC	4 cut(s)	129, 144, 192, 354
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
Psp124BI	GAGCTC	3 cut(s)	8, 31, 480
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	19
PvuII	CAGCTG	1 cut(s)	127
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
SacI	GAGCTC	3 cut(s)	8, 31, 480
SatI	GCNGC	4 cut(s)	128, 143, 191, 353
Sau96I	GGNCC	1 cut(s)	19
SchI	GAGTC	1 cut(s)	40
SduI	GDGCHC	3 cut(s)	8, 31, 480
Sfr274I	CTCGAG	1 cut(s)	41
SinI	GGWCC	1 cut(s)	19
SlaI	CTCGAG	1 cut(s)	41
SmlI	CTYRAG	2 cut(s)	41, 284
SmoI	CTYRAG	2 cut(s)	41, 284
Sse9I	AATT	3 cut(s)	83, 212, 391
SseBI	AGGCCT	1 cut(s)	282
SstI	GAGCTC	3 cut(s)	8, 31, 480
StuI	AGGCCT	1 cut(s)	282
StyI	CCWWGG	1 cut(s)	22
TaqI	TCGA	1 cut(s)	42
TasI	AATT	3 cut(s)	83, 212, 391
TscAI	CASTG	2 cut(s)	21, 465
TseI	GCWGC	4 cut(s)	127, 142, 190, 352
TspRI	CASTG	2 cut(s)	21, 465
VpaK11BI	GGWCC	1 cut(s)	19
XapI	RAATTY	1 cut(s)	391
XhoI	CTCGAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.