Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006884

Physical Location & Seq

Genomic Coordinates Forward (+)

41721754 .. 41727908

Gene Structure 6155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1301700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2808 bp

ATGGTGGAGAGGAGGAGGAGGAAGCCACTGGTGCTTACTTCCACCAAAAGTCTCGTCAATTCCGTACTGAGTGAAGACCGCCCAGTCGACGGCGGCGGCGATGGCGACGAGTCTACGAGCTTGCAGTTGCCGCCGGGGATTCTCCGGCTGTCTAAGGACAGAACGGTCCTTTCAAGCAGCCCCAAATTGGCTTCTCTCGACGACTCTGCTTTGGTCGGGCTGCTCACTTCTGCCCTCAAACGGCTCTCCATCACCTCCGGCTCTCTGGTGACTGTGATGAATGTGGAGACAAACGTACAAAGAACCGCTCAGGCCATTGTCCTTGATCCTCCGAACAGCCATGATTGCGCCACGAAGATTGAACAATCCTTGTCTGAATTTTCTCACGCAATGCTTATTTTGCCTTGTTGTACTTTCCCCGGAAATGATCGAATGTCGTTGAAGCGCGAAGTTGCGTATATATCACCTCTATTAGCATATAACCTTGACTTGCACACATTGTGCTTCAAATCACTCGTTCATAGAGGGGAAGAGCTTTTGGCATCTTATTTTGGAGAGAAAGTGGATGATGAGGTGAGCGGGAAAGGCCTTGAGGCTTCTGTAGTTGGATTGCAGTTGGAGCCTCAGCCTCAGTTGCCAAGATATGCTTCCCATTTGAGAGCTTCTTTCGTGAAGATACCGGAATGTGGTACACTTGACTCTCTTAAAGGAAATTCGTCCGTTGAATATGAAGATCGTCAAGAAATGATAGATTTGGCACTACATAACTACTTTGGAGTTGATAGGTATCTAGCAAGAGGTGATATTTTCAGTATTTGTATCAATTGGAGTTGCAAGTCAATGATGTGCATTCCTTGCAACCAAAGTTCACAAGATGGAAGTGATAACATCTATTTCAAGGTTGTGGCCATGGAACCTTCAGACGATTCCATTCTCCGAGTTAATCGCTCTCAAACAGCCCTTGTGCTTGGAGGGAGTGTCTCTTCTGCTGTACCCCCAGACTTATTGATTGCTGGAAAACAAGGTTTTGCACCTTTGCAAGGGGACACCGTAAAAATATTGGCCTCCATACTTGCACCGCCTCTCTGCCCATCAGCACTATCTTCAAAATTCAGAGTTTCAGTTCTCCTGTACGGATTGGCAGGATGTGGTAAGAGAACAGTTGTTAGATACATTGCTCGTCGATTGGGCCTGCATGTAGTTGAATATAGCTGTCACAATCTAATGGCATCATCTGATAAAAGGATGTCTGTTTCACTAGCTCAAACCTTGAATACAGCTCAAAGATACTCGCCAGCAATACTTCTTCTCCGCCATTTTGACGTTTTCCGGAATTTGGGCTCTAATGAAGGTCCACCAAGTGATCAAGTTGGAATCAATTCTGAAGTGGCTTCACTTATCAGGGAATTCACTGAGCCAATTTCTGATGAAGGAGACATGGATTTTGAAGGAAAACACAATGGTGATACTGATGCTGGGAAGATAGGAAGGCATCGGGTGCTGTTAATTGCAGCTGCTGACAGTACTGAAGGTCTACCACCAATTATTAGACGCTGCTTTAGCCATGAAATAAGTATGGGTCCTTTGACCGAAGAACAAAGGGTGAAAATGGTGTCACAATCGCTGCAAACGGCTTCTGAACTCTTTTCTAATACTGGTTCAGAGGAGTTTATAAAGGATATAGTTGCGCAGACATCTGGTTTCATGCCTAGAGATATCCATGCTTTGATTGCTGATGCTGGTGCTAACTTGATTTCCAGAGGCAATGTTCTGATTGACAGTGTTGAGTCGGAGGAATCAGATGGATCTCTCAGACCTAATGTGGAATCTGATAGTAAGTCCTCTGCAGTTGCACCTCAGGTTCTGAGGAAAGAAAACTTGACAAAGGCATTGGAGCGTTCAAAGAAAAGGAATGCAACAGCCCTGGGTACACCAAAGGTCCCTAATGTGAAATGGGATGATGTTGGCGGTCTTGAGGATGTGAAGAAATCAATTCTGGATACTGTTCAGCTACCTCTTCTGCACAAGGACTTGTTTTCATCTGGTTTACGAAAGCGGTCTGGTGTTCTTCTATATGGTCCACCTGGAACTGGAAAAACTCTACTGGCAAAAGCCGTTGCAACTGAGTGTTCCCTGAACTTTCTCAGCGTAAAAGGACCTGAACTTATCAATATGTACATAGGAGAGTCAGAAAAGAATGTTAGAGACATCTTCCAGAAGGCCAGGTCAGCACGCCCATGTGTTATATTTTTTGATGAACTTGATTCTCTTGCTCCAGCCCGCGGTGCCTCTGGGGATTCTGGGGGTGTTATGGACAGAGTGGTTTCTCAGATGCTTGCAGAGATCGACGGCCTAAACGATTCAACACAGGACTTGTTTATAATTGGAGCAAGCAACAGACCAGATTTGATTGACCCAGCACTTCTACGGCCTGGACGATTTGATAAACTACTTTATGTTGGAGTAAACTCTGAAGCATCTTACAGAGAGCGGGTCCTCAAAGCACTTACCCGAAAGTTTAAGTTACATCAAGACGTACCACTTTACTCCATAGCAAAGAGATGTCCCCCGAACTTCACTGGTGCAGACATGTACGCGTTGTGTGCAGACGCTTGGTTTAATGCAGCAAAGCGCAAGGCTTTGAGTTCGGATTCAGATTCTTCCGGCACAGATGAACAATCGGACTCTGTTATTGTCGAATATGATGATTTTATCAAGGTCTTAGGGGAGCTTTCTCCGTCGCTCTCCATGGCCGAGCTTAGAAAGTACGAGTTGCTGCGTGATCAGTTCGAAGGAGCTCCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042886 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

AAA

Protein Analysis

936

Amino Acids

101.87

Weight (kDa)

5.82

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	375 - 526	1.7e-11	ATPase family associated with various cellular activities (AAA)
AAA	PF00004	689 - 821	4.7e-46	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03000
fragaria_vesca	FvH4_2g25060 FvH4_2g25060 FvH4_2g25060 FvH4_2g25060 FvH4_2g25060 FvH4_2g25060 FvH4_2g25060
malus_domestica	MD11G1301700.v1.1
prunus_persica	Prupe.8G255300_v2.0.a1 Prupe.8G255300_v2.0.a1 Prupe.8G255300_v2.0.a1
pyrus_communis	pycom11g26430
rosa_chinensis	RchiOBHm_Chr6g0293081
rosa_laevigata	RLG00000011973
rosa_multiflora	Rmu_co8222790.1_g000001 Rmu_sc0003615.1_g000004 Rmu_sc0033483.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174440
rosa_rugosa	Rorug06G0232600.1 Rorug06G0232700
rosa_samantha	Rh6AG345400 Rh6BG352900 Rh6CG359400 Rh6DG345400
rosa_wichuraiana	Rw6G030100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1673, 2381
AasI	GACNNNNNNGTC	2 cut(s)	83, 164
Acc16I	TGCGCA	1 cut(s)	1689
AccB1I	GGYRCC	1 cut(s)	2285
AccBSI	CCGCTC	3 cut(s)	308, 579, 2491
AccI	GTMKAC	3 cut(s)	87, 113, 1534
AccII	CGCG	3 cut(s)	447, 2283, 2597
AccIII	TCCGGA	1 cut(s)	1329
AclWI	GGATC	2 cut(s)	320, 1813
AcoI	YGGCCR	2 cut(s)	906, 2751
AcsI	RAATTY	5 cut(s)	377, 712, 1109, 1333, 1406
AcuI	CTGAAG	4 cut(s)	903, 1404, 1548, 2493
AdeI	CACNNNGTG	2 cut(s)	501, 1361
AfiI	CCNNNNNNNGG	8 cut(s)	89, 187, 240, 686, 1040, 1336, 2090, 2282
AflIII	ACRYGT	2 cut(s)	2589, 2595
AjnI	CCWGG	4 cut(s)	1923, 2083, 2222, 2431
AjuI	GAANNNNNNNTTGG	2 cut(s)	631, 663
AleI	CACNNNNGTG	1 cut(s)	1461
Alw21I	GWGCWC	1 cut(s)	2800
Alw26I	GTCTC	5 cut(s)	56, 281, 985, 1428, 2199
AlwI	GGATC	2 cut(s)	320, 1813
AlwNI	CAGNNNCTG	2 cut(s)	1517, 1864
Aor13HI	TCCGGA	1 cut(s)	1329
AoxI	GGCC	9 cut(s)	312, 586, 906, 1062, 1189, 2220, 2350, 2429, 2751
ApeKI	GCWGC	8 cut(s)	177, 220, 1511, 1514, 1554, 1624, 2624, 2776
ApoI	RAATTY	5 cut(s)	377, 712, 1109, 1333, 1406
ArsI	GACNNNNNNTTYG	4 cut(s)	39, 71, 1427, 1459
Asp700I	GAANNNNTTC	1 cut(s)	1378
AspLEI	GCGC	4 cut(s)	350, 447, 1690, 2634
AspS9I	GGNCC	8 cut(s)	166, 1189, 1352, 1580, 1939, 2078, 2156, 2494
AsuC2I	CCSGG	2 cut(s)	135, 420
AsuHPI	GGTGA	7 cut(s)	244, 280, 456, 586, 812, 1475, 1615
AsuII	TTCGAA	1 cut(s)	2790
AvaII	GGWCC	7 cut(s)	166, 1352, 1580, 1939, 2078, 2156, 2494
AxyI	CCTNAGG	1 cut(s)	1857
BalI	TGGCCA	1 cut(s)	908
BanI	GGYRCC	1 cut(s)	2285
BanII	GRGCYC	2 cut(s)	1343, 2800
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	2800
BbvCI	CCTCAGC	1 cut(s)	624
BbvI	GCAGC	8 cut(s)	189, 207, 1501, 1523, 1541, 1611, 2636, 2763
BccI	CCATC	5 cut(s)	95, 257, 869, 1099, 1796
BceAI	ACGGC	6 cut(s)	106, 257, 1647, 2099, 2365, 2444
BcgI	CGANNNNNNTGC	2 cut(s)	188, 222
BciT130I	CCWGG	4 cut(s)	1925, 2085, 2224, 2433
BciVI	GTATCC	1 cut(s)	1993
BclI	TGATCA	2 cut(s)	1363, 2782
BcnI	CCSGG	2 cut(s)	135, 420
BcoDI	GTCTC	5 cut(s)	56, 281, 985, 1428, 2199
BfaI	CTAG	3 cut(s)	791, 1259, 1710
BfmI	CTRYAG	2 cut(s)	600, 1845
BfuI	GTATCC	1 cut(s)	1993
BmcAI	AGTACT	1 cut(s)	1525
Bme1390I	CCNGG	6 cut(s)	135, 420, 1925, 2085, 2224, 2433
Bme18I	GGWCC	7 cut(s)	166, 1352, 1580, 1939, 2078, 2156, 2494
BmgT120I	GGNCC	8 cut(s)	166, 1189, 1352, 1580, 1939, 2078, 2156, 2494
BmiI	GGNNCC	6 cut(s)	621, 915, 1581, 1941, 2287, 2495
BmrFI	CCNGG	6 cut(s)	135, 420, 1925, 2085, 2224, 2433
BmrI	ACTGGG	1 cut(s)	77
BmsI	GCATC	7 cut(s)	551, 1238, 1462, 1501, 1726, 2322, 2486
BmuI	ACTGGG	1 cut(s)	77
BpiI	GAAGAC	1 cut(s)	81
BpmI	CTGGAG	1 cut(s)	2259
Bpu10I	CCTNAGC	2 cut(s)	309, 624
Bpu14I	TTCGAA	1 cut(s)	2790
BpuEI	CTTGAG	2 cut(s)	611, 1994
BpuMI	CCSGG	2 cut(s)	135, 420
BsaBI	GATNNNNATC	1 cut(s)	786
BsaJI	CCNNGG	7 cut(s)	134, 418, 909, 1923, 1924, 2281, 2748
BsaWI	WCCGGW	2 cut(s)	679, 1329
BsaXI	ACNNNNNCTCC	6 cut(s)	546, 576, 963, 993, 1293, 1323
Bsc4I	CCNNNNNNNGG	8 cut(s)	89, 187, 240, 686, 1040, 1336, 2090, 2282
Bse1I	ACTGG	6 cut(s)	33, 83, 1660, 2095, 2109, 2584
Bse21I	CCTNAGG	1 cut(s)	1857
Bse3DI	GCAATG	3 cut(s)	396, 1173, 1771
Bse8I	GATNNNNATC	1 cut(s)	786
BseAI	TCCGGA	1 cut(s)	1329
BseBI	CCWGG	4 cut(s)	1925, 2085, 2224, 2433
BseDI	CCNNGG	7 cut(s)	134, 418, 909, 1923, 1924, 2281, 2748
BseGI	GGATG	5 cut(s)	571, 1151, 1251, 1963, 1984
BseJI	GATNNNNATC	1 cut(s)	786
BseLI	CCNNNNNNNGG	8 cut(s)	89, 187, 240, 686, 1040, 1336, 2090, 2282
BseMI	GCAATG	3 cut(s)	396, 1173, 1771
BseNI	ACTGG	6 cut(s)	33, 83, 1660, 2095, 2109, 2584
BseRI	GAGGAG	4 cut(s)	25, 28, 31, 1679
BseXI	GCAGC	8 cut(s)	189, 207, 1501, 1523, 1541, 1611, 2636, 2763
BseYI	CCCAGC	2 cut(s)	1475, 2416
BsgI	GTGCAG	3 cut(s)	2006, 2604, 2625
Bsh1236I	CGCG	3 cut(s)	447, 2283, 2597
BshFI	GGCC	9 cut(s)	314, 588, 908, 1064, 1191, 2222, 2352, 2431, 2753
BshNI	GGYRCC	1 cut(s)	2285
BsiHKAI	GWGCWC	1 cut(s)	2800
BsiSI	CCGG	7 cut(s)	134, 145, 258, 420, 680, 1330, 2664
BslFI	GGGAC	3 cut(s)	1058, 1925, 2550
BslI	CCNNNNNNNGG	8 cut(s)	89, 187, 240, 686, 1040, 1336, 2090, 2282
BsmAI	GTCTC	5 cut(s)	56, 281, 985, 1428, 2199
BsmFI	GGGAC	3 cut(s)	1058, 1925, 2550
BsmI	GAATGC	2 cut(s)	849, 1918
BsnI	GGCC	9 cut(s)	314, 588, 908, 1064, 1191, 2222, 2352, 2431, 2753
Bsp119I	TTCGAA	1 cut(s)	2790
Bsp1286I	GDGCHC	2 cut(s)	1343, 2800
Bsp13I	TCCGGA	1 cut(s)	1329
Bsp1407I	TGTACA	1 cut(s)	2175
Bsp143I	GATC	7 cut(s)	325, 427, 733, 1363, 1805, 2343, 2782
Bsp19I	CCATGG	2 cut(s)	909, 2748
BspANI	GGCC	9 cut(s)	314, 588, 908, 1064, 1191, 2222, 2352, 2431, 2753
BspEI	TCCGGA	1 cut(s)	1329
BspFNI	CGCG	3 cut(s)	447, 2283, 2597
BspLI	GGNNCC	6 cut(s)	621, 915, 1581, 1941, 2287, 2495
BspMAI	CTGCAG	1 cut(s)	1849
BspPI	GGATC	2 cut(s)	320, 1813
BspQI	GCTCTTC	1 cut(s)	525
BspT104I	TTCGAA	1 cut(s)	2790
BspT107I	GGYRCC	1 cut(s)	2285
BsrBI	CCGCTC	3 cut(s)	308, 579, 2491
BsrDI	GCAATG	3 cut(s)	396, 1173, 1771
BsrGI	TGTACA	1 cut(s)	2175
BsrI	ACTGG	6 cut(s)	33, 83, 1660, 2095, 2109, 2584
BssECI	CCNNGG	7 cut(s)	134, 418, 909, 1923, 1924, 2281, 2748
BssMI	GATC	7 cut(s)	325, 427, 733, 1363, 1805, 2343, 2782
BssT1I	CCWWGG	2 cut(s)	909, 2748
Bst2UI	CCWGG	4 cut(s)	1925, 2085, 2224, 2433
Bst4CI	ACNGT	7 cut(s)	166, 274, 1051, 1162, 1523, 1781, 2005
Bst6I	CTCTTC	3 cut(s)	525, 988, 2022
BstAPI	GCANNNNNTGC	2 cut(s)	855, 1498
BstAUI	TGTACA	1 cut(s)	2175
BstBI	TTCGAA	1 cut(s)	2790
BstC8I	GCNNGC	7 cut(s)	122, 1193, 1296, 2233, 2281, 2337, 2392
BstDSI	CCRYGG	3 cut(s)	909, 2281, 2748
BstENI	CCTNNNNNAGG	1 cut(s)	1038
BstF5I	GGATG	5 cut(s)	571, 1151, 1251, 1963, 1984
BstFNI	CGCG	3 cut(s)	447, 2283, 2597
BstHHI	GCGC	4 cut(s)	350, 447, 1690, 2634
BstKTI	GATC	7 cut(s)	328, 430, 736, 1366, 1808, 2346, 2785
BstMAI	GTCTC	5 cut(s)	56, 281, 985, 1428, 2199
BstMBI	GATC	7 cut(s)	325, 427, 733, 1363, 1805, 2343, 2782
BstNI	CCWGG	4 cut(s)	1925, 2085, 2224, 2433
BstNSI	RCATGY	2 cut(s)	1199, 2593
BstSCI	CCNGG	6 cut(s)	133, 418, 1923, 2083, 2222, 2431
BstSFI	CTRYAG	2 cut(s)	600, 1845
BstUI	CGCG	3 cut(s)	447, 2283, 2597
BstV1I	GCAGC	8 cut(s)	189, 207, 1501, 1523, 1541, 1611, 2636, 2763
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	1805
BstYI	RGATCY	1 cut(s)	1805
Bsu36I	CCTNAGG	1 cut(s)	1857
BsuI	GTATCC	1 cut(s)	1993
BsuRI	GGCC	9 cut(s)	314, 588, 908, 1064, 1191, 2222, 2352, 2431, 2753
BtgI	CCRYGG	3 cut(s)	909, 2281, 2748
BtgZI	GCGATG	1 cut(s)	114
BtsCI	GGATG	5 cut(s)	571, 1151, 1251, 1963, 1984
BtsIMutI	CAGTG	4 cut(s)	26, 1410, 1786, 2577
Cac8I	GCNNGC	7 cut(s)	122, 1193, 1296, 2233, 2281, 2337, 2392
CaiI	CAGNNNCTG	2 cut(s)	1517, 1864
CfoI	GCGC	4 cut(s)	350, 447, 1690, 2634
Cfr13I	GGNCC	8 cut(s)	166, 1189, 1352, 1580, 1939, 2078, 2156, 2494
Cfr42I	CCGCGG	1 cut(s)	2284
CseI	GACGC	2 cut(s)	1560, 2618
CspCI	CAANNNNNGTGG	2 cut(s)	340, 375
DpnI	GATC	7 cut(s)	327, 429, 735, 1365, 1807, 2345, 2784
DpnII	GATC	7 cut(s)	325, 427, 733, 1363, 1805, 2343, 2782
DraIII	CACNNNGTG	2 cut(s)	501, 1361
DrdI	GACNNNNNNGTC	2 cut(s)	83, 164
DseDI	GACNNNNNNGTC	2 cut(s)	83, 164
EaeI	YGGCCR	2 cut(s)	906, 2751
Eam1104I	CTCTTC	3 cut(s)	525, 988, 2022
EarI	CTCTTC	3 cut(s)	525, 988, 2022
EciI	GGCGGA	1 cut(s)	1301
Ecl136II	GAGCTC	1 cut(s)	2798
Eco130I	CCWWGG	2 cut(s)	909, 2748
Eco147I	AGGCCT	1 cut(s)	588
Eco24I	GRGCYC	2 cut(s)	1343, 2800
Eco32I	GATATC	1 cut(s)	1717
Eco47I	GGWCC	7 cut(s)	166, 1352, 1580, 1939, 2078, 2156, 2494
Eco53kI	GAGCTC	1 cut(s)	2798
Eco57I	CTGAAG	4 cut(s)	903, 1404, 1548, 2493
Eco81I	CCTNAGG	1 cut(s)	1857
EcoICRI	GAGCTC	1 cut(s)	2798
EcoNI	CCTNNNNNAGG	1 cut(s)	1038
EcoO109I	RGGNCCY	4 cut(s)	1580, 1939, 2156, 2494
EcoRI	GAATTC	1 cut(s)	1406
EcoRII	CCWGG	4 cut(s)	1923, 2083, 2222, 2431
EcoRV	GATATC	1 cut(s)	1717
EcoT14I	CCWWGG	2 cut(s)	909, 2748
EcoT38I	GRGCYC	2 cut(s)	1343, 2800
ErhI	CCWWGG	2 cut(s)	909, 2748
FalI	AAGNNNNNCTT	2 cut(s)	631, 663
FaqI	GGGAC	3 cut(s)	1058, 1925, 2550
FauI	CCCGC	3 cut(s)	572, 2288, 2484
FbaI	TGATCA	2 cut(s)	1363, 2782
FblI	GTMKAC	3 cut(s)	87, 113, 1534
FokI	GGATG	5 cut(s)	578, 1158, 1258, 1970, 1991
FriOI	GRGCYC	2 cut(s)	1343, 2800
FspBI	CTAG	3 cut(s)	791, 1259, 1710
FspI	TGCGCA	1 cut(s)	1689
GlaI	GCGC	4 cut(s)	349, 446, 1689, 2633
GsaI	CCCAGC	2 cut(s)	1479, 2420
GsuI	CTGGAG	1 cut(s)	2259
HaeIII	GGCC	9 cut(s)	314, 588, 908, 1064, 1191, 2222, 2352, 2431, 2753
HapII	CCGG	7 cut(s)	134, 145, 258, 420, 680, 1330, 2664
HgaI	GACGC	2 cut(s)	1560, 2618
HhaI	GCGC	4 cut(s)	350, 447, 1690, 2634
Hin6I	GCGC	4 cut(s)	348, 445, 1688, 2632
HinP1I	GCGC	4 cut(s)	348, 445, 1688, 2632
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HpaII	CCGG	7 cut(s)	134, 145, 258, 420, 680, 1330, 2664
HphI	GGTGA	7 cut(s)	244, 280, 456, 586, 812, 1475, 1615
Hpy188III	TCNNGA	9 cut(s)	197, 670, 740, 1330, 1758, 1973, 1997, 2215, 2531
Hpy99I	CGWCG	6 cut(s)	92, 110, 203, 1185, 2351, 2743
HpyAV	CCTTC	8 cut(s)	927, 1343, 1424, 1442, 1482, 1523, 2212, 2786
HpyCH4III	ACNGT	7 cut(s)	166, 274, 1051, 1162, 1523, 1781, 2005
HpyCH4IV	ACGT	3 cut(s)	294, 1323, 2535
HpySE526I	ACGT	3 cut(s)	294, 1323, 2535
HspAI	GCGC	4 cut(s)	348, 445, 1688, 2632
Kpn2I	TCCGGA	1 cut(s)	1329
Ksp22I	TGATCA	2 cut(s)	1363, 2782
KspI	CCGCGG	1 cut(s)	2284
Kzo9I	GATC	7 cut(s)	325, 427, 733, 1363, 1805, 2343, 2782
LguI	GCTCTTC	1 cut(s)	525
LmnI	GCTCC	7 cut(s)	619, 1894, 2278, 2387, 2728, 2795, 2803
Lsp1109I	GCAGC	8 cut(s)	189, 207, 1501, 1523, 1541, 1611, 2636, 2763
LweI	GCATC	7 cut(s)	551, 1238, 1462, 1501, 1726, 2322, 2486
MaeI	CTAG	3 cut(s)	791, 1259, 1710
MaeII	ACGT	3 cut(s)	294, 1323, 2535
MaeIII	GTNAC	4 cut(s)	268, 1214, 1614, 2523
MalI	GATC	7 cut(s)	327, 429, 735, 1365, 1807, 2345, 2784
MbiI	CCGCTC	3 cut(s)	308, 579, 2491
MboI	GATC	7 cut(s)	325, 427, 733, 1363, 1805, 2343, 2782
MfeI	CAATTG	1 cut(s)	823
MflI	RGATCY	1 cut(s)	1805
MhlI	GDGCHC	2 cut(s)	1343, 2800
MlsI	TGGCCA	1 cut(s)	908
MluI	ACGCGT	1 cut(s)	2595
MluNI	TGGCCA	1 cut(s)	908
MlyI	GAGTC	6 cut(s)	119, 197, 692, 1796, 2195, 2678
MmeI	TCCRAC	5 cut(s)	586, 597, 1351, 1770, 2440
Mox20I	TGGCCA	1 cut(s)	908
MroI	TCCGGA	1 cut(s)	1329
MroXI	GAANNNNTTC	1 cut(s)	1378
MscI	TGGCCA	1 cut(s)	908
MseI	TTAA	5 cut(s)	705, 942, 1505, 2520, 2619
MslI	CAYNNNNRTG	2 cut(s)	1461, 2236
Msp20I	TGGCCA	1 cut(s)	908
MspA1I	CMGCKG	2 cut(s)	1514, 2283
MspI	CCGG	7 cut(s)	134, 145, 258, 420, 680, 1330, 2664
MspR9I	CCNGG	6 cut(s)	135, 420, 1925, 2085, 2224, 2433
MunI	CAATTG	1 cut(s)	823
Mva1269I	GAATGC	2 cut(s)	849, 1918
MvaI	CCWGG	4 cut(s)	1925, 2085, 2224, 2433
MvnI	CGCG	3 cut(s)	447, 2283, 2597
NciI	CCSGG	2 cut(s)	135, 420
NcoI	CCATGG	2 cut(s)	909, 2748
NdeII	GATC	7 cut(s)	325, 427, 733, 1363, 1805, 2343, 2782
NlaIV	GGNNCC	6 cut(s)	621, 915, 1581, 1941, 2287, 2495
NmeAIII	GCCGAG	1 cut(s)	2779
NmuCI	GTSAC	3 cut(s)	268, 1214, 1614
NsbI	TGCGCA	1 cut(s)	1689
NspI	RCATGY	2 cut(s)	1199, 2593
NspV	TTCGAA	1 cut(s)	2790
OliI	CACNNNNGTG	1 cut(s)	1461
PasI	CCCWGGG	1 cut(s)	1924
PceI	AGGCCT	1 cut(s)	588
PciI	ACATGT	1 cut(s)	2589
PciSI	GCTCTTC	1 cut(s)	525
PcsI	WCGNNNNNNNCGW	4 cut(s)	60, 96, 2355, 2434
PctI	GAATGC	2 cut(s)	849, 1918
PdmI	GAANNNNTTC	1 cut(s)	1378
PleI	GAGTC	6 cut(s)	118, 197, 692, 1795, 2194, 2678
PpsI	GAGTC	6 cut(s)	118, 197, 692, 1795, 2194, 2678
PpuMI	RGGWCCY	4 cut(s)	1580, 1939, 2156, 2494
PscI	ACATGT	1 cut(s)	2589
PsiI	TTATAA	2 cut(s)	1673, 2381
Psp124BI	GAGCTC	1 cut(s)	2800
Psp5II	RGGWCCY	4 cut(s)	1580, 1939, 2156, 2494
Psp6I	CCWGG	4 cut(s)	1923, 2083, 2222, 2431
PspFI	CCCAGC	2 cut(s)	1475, 2416
PspGI	CCWGG	4 cut(s)	1923, 2083, 2222, 2431
PspN4I	GGNNCC	6 cut(s)	621, 915, 1581, 1941, 2287, 2495
PspPI	GGNCC	8 cut(s)	166, 1189, 1352, 1580, 1939, 2078, 2156, 2494
PspPPI	RGGWCCY	4 cut(s)	1580, 1939, 2156, 2494
PstI	CTGCAG	1 cut(s)	1849
PstNI	CAGNNNCTG	2 cut(s)	1517, 1864
PsuI	RGATCY	1 cut(s)	1805
PvuII	CAGCTG	1 cut(s)	1514
RseI	CAYNNNNRTG	2 cut(s)	1461, 2236
SacI	GAGCTC	1 cut(s)	2800
SacII	CCGCGG	1 cut(s)	2284
SalI	GTCGAC	1 cut(s)	86
SapI	GCTCTTC	1 cut(s)	525
SaqAI	TTAA	5 cut(s)	705, 942, 1505, 2520, 2619
Sau3AI	GATC	7 cut(s)	325, 427, 733, 1363, 1805, 2343, 2782
Sau96I	GGNCC	8 cut(s)	166, 1189, 1352, 1580, 1939, 2078, 2156, 2494
ScaI	AGTACT	1 cut(s)	1525
SchI	GAGTC	6 cut(s)	119, 197, 692, 1796, 2195, 2678
ScrFI	CCNGG	6 cut(s)	135, 420, 1925, 2085, 2224, 2433
SduI	GDGCHC	2 cut(s)	1343, 2800
SfaNI	GCATC	7 cut(s)	551, 1238, 1462, 1501, 1726, 2322, 2486
SfcI	CTRYAG	2 cut(s)	600, 1845
Sfr303I	CCGCGG	1 cut(s)	2284
SfuI	TTCGAA	1 cut(s)	2790
SgrBI	CCGCGG	1 cut(s)	2284
SinI	GGWCC	7 cut(s)	166, 1352, 1580, 1939, 2078, 2156, 2494
SmiMI	CAYNNNNRTG	2 cut(s)	1461, 2236
SmlI	CTYRAG	2 cut(s)	590, 1973
SmoI	CTYRAG	2 cut(s)	590, 1973
SseBI	AGGCCT	1 cut(s)	588
SspI	AATATT	1 cut(s)	1059
SspMI	CTAG	3 cut(s)	791, 1259, 1710
SstI	GAGCTC	1 cut(s)	2800
StuI	AGGCCT	1 cut(s)	588
StyD4I	CCNGG	6 cut(s)	133, 418, 1923, 2083, 2222, 2431
StyI	CCWWGG	2 cut(s)	909, 2748
TaaI	ACNGT	7 cut(s)	166, 274, 1051, 1162, 1523, 1781, 2005
TaiI	ACGT	3 cut(s)	297, 1326, 2538
TaqI	TCGA	7 cut(s)	87, 198, 430, 1183, 2346, 2697, 2790
TaqII	GACCGA	1 cut(s)	1604
TatI	WGTACW	3 cut(s)	410, 1523, 2175
TauI	GCSGC	3 cut(s)	96, 99, 133
Tru1I	TTAA	5 cut(s)	705, 942, 1505, 2520, 2619
Tru9I	TTAA	5 cut(s)	705, 942, 1505, 2520, 2619
TscAI	CASTG	4 cut(s)	33, 1417, 1786, 2584
TseFI	GTSAC	3 cut(s)	268, 1214, 1614
TseI	GCWGC	8 cut(s)	177, 220, 1511, 1514, 1554, 1624, 2624, 2776
Tsp45I	GTSAC	3 cut(s)	268, 1214, 1614
TspGWI	ACGGA	4 cut(s)	52, 709, 1149, 2727
TspRI	CASTG	4 cut(s)	33, 1417, 1786, 2584
VpaK11BI	GGWCC	7 cut(s)	166, 1352, 1580, 1939, 2078, 2156, 2494
XagI	CCTNNNNNAGG	1 cut(s)	1038
XapI	RAATTY	5 cut(s)	377, 712, 1109, 1333, 1406
XceI	RCATGY	2 cut(s)	1199, 2593
XmiI	GTMKAC	3 cut(s)	87, 113, 1534
XmnI	GAANNNNTTC	1 cut(s)	1378
XspI	CTAG	3 cut(s)	791, 1259, 1710
ZrmI	AGTACT	1 cut(s)	1525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.