Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006884

Physical Location & Seq

Genomic Coordinates Forward (+)

54826687 .. 54833284

Gene Structure 6598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG359400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2346 bp

ATGGTGGGGAGGAGGAGGAAGCCACTGGTGCTCACTTCCACCAAAACTCTCATCAAATCCGTACTGACTTCGCCGCCGGGAGAACTCACTTCCGACGACGATCACCGACTCGCCGCCGTCGCCGCTGATGACGTGTCTACTAGTTTGCAGCTGCTGCCGCCGGGAATTCTCCGGTTCTCCATCGGTCGGAGCCCCAAATTGGCTTCTCTCGACGACTCTGCTCTCGTTGGGCTCTCCACTGCTCTCCTCAAACGCCTCTGCATCACCTCCGGCTCCCTGGTGCTTGTGAAGAATATGGAGACAACAATAGAAAGAATTGCTCAGGCCATTGTTGTGGATCCTCCGGACCGCTCCGAGAACACTGGACTATCTGCTGCCCAATCTTCCCAGGCAATGCTTATTCTGCCTTGTTGCACTTTCCCTGAAAATGGCCACATGTTGTTAGACCAGGAAGTTGCCTATATATCACCTCTGTTGGCATTTAACATTGACTTGCATACATTGTGCTTGAAATCGCTTGTCCATAGAGGGGAAGCGGCGTTGGCATCTTATTTCGGGGATAGAGTGGACGAAGAGGTGAGTGGGAAAGGCGTCGGGGCTTCTGTGATTGGAATACAACCTCAGTTGGAGTTGCCAAGATATGCTTCGCACTTGAGGGCTTCCTTTGTGAGGATACCAGAATGTGGTAGTCTTGACTCTCTTAGAGGAAATTCGGCTGTTGAACATGAAGATCGTCAAGAAATGATAGATTTGGCACTACATAGCTACTTTGAAGTTGATAGGTATCTAGCAAGAGGTGATGTTTTCAGTATTTGTATAAAATGGAATTGCAAGTCAACGATTTGCGTTCCTTGCAACCAAAGTTTGGAAAATGGGGTTGATAACACTATCTATTTCAAGGTTGTGGCTATGGAACCTTTGGACGAACCAATTCTCCGAGTTAACCGTTCTCAAACTGCCCTTGTGCTTGGAGGAAATGTCTCTTCTGCTGTGCCCCCTGATTTATTGATTTCTGGACAAAAAGGTTTCACACCCTTGCAAGGGGACACAGTGAAAATATTGGCCTCCATACTTACACCTCTTCTGTGCCCCTCAGCACTATCTTCAAAATTCAGAGTTTCTGTTCTGTTGTATGGATTGGCAGGATGTGGGAAGAGAACAGTTGTTAGATACATTGCTCATCGATTGGGCCTGCATGTAGTTGAATATAGCTGTCATAATCTGACGACGTCATCTGAAAAAAAGATGTCTGTTGCACTAGCCCAAACCTTGAATGCAGCTCAAAGATACTCGCCAACTATACTTCTTCTCCGCCATTTTGATGTTTTCCGGAATTTGCACGAAGGTCCACCAAATGATCAAGTTGGCATCACTTCTGAAGTTGCATCACTTATAAGGGAATTCACTGAGCCAATCTCTGATTATGGAGACATTGATTCTGAACAAAAACAAAATGGTCATGTTGATTCTGGGAAGATAGGTAGGCATCAAGTGCTGTTCATTGCAGCTGCTGACAGTTCAGAAGGTCTACCGCCAATTATTAGACGTTGCTTTAGCCATGAAATAAGTATGGGTCCTTTGACTGAAGAACAAAGGGTTAGAATGGTCTCACAGTCTTTGCAGAAGGCTTCTGAATTCCTTTCTAATACTAATTCGGAGGATCTTATAAAGGATATAGTTGCGCAGACATCTGGTTTCATGCCGAGAGATATCTGTGCATTGGTTGCTGATGCTGGTGCAAACTTGATTCCCGAAGGCAATGCTCAGATTGATACACTGAAGTCTGAAGAATCAGATGCTTCTCTCACAAATAATGTTGAATCAGACAGTAAGTCCTCTGAAGTTGCATCTCCGATTCTGGGGAAAGAAAGCTTGACAAAAGCATTGGAAAGATCAAAGAAAAGGAATGCATCAGCCCTCGGTACTCCAAAGGTTCCTAATGTGAAATGGGAAGATGTTGGTGGTCTTGAGGATGTGAAGAAATCAATCCTGGATACTGTTCAGTTACCTCTTCTGCACAAGGACTTGTTTTCATCTGGCTTACGAAAGCGTTCTGGTGTTCTTCTGTATGGTCCTCCTGGAACAGGGAAAACTCTACTGGCAAAAGCTGTTGCAACTGAGTGCTCCCTGAATTTTCTCAGTGTAAAAGGACCTGAACTAATTAATATGTACATAGGAGAGTCAGAAAAGAATATCAGAGACATTTTCCAGAAGGCCAGATCAGCACGCCCATGTGTTATATTTTTTGATGAACTTGATTCTCTTGCTCCAGCCCGAGGTGCATCTGGGGATTCTGGGGGTGTTATGGACAGAGTGGTTTCTCAGGTGAAGCATCCTTTTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042886 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

AAA

Protein Analysis

781

Amino Acids

84.57

Weight (kDa)

6.15

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	375 - 524	2e-12	ATPase family associated with various cellular activities (AAA)
AAA	PF00004	687 - 775	1.9e-30	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03000
fragaria_vesca	FvH4_2g25060 FvH4_2g25060 FvH4_2g25060 FvH4_2g25060 FvH4_2g25060 FvH4_2g25060 FvH4_2g25060
malus_domestica	MD11G1301700.v1.1
prunus_persica	Prupe.8G255300_v2.0.a1 Prupe.8G255300_v2.0.a1 Prupe.8G255300_v2.0.a1
pyrus_communis	pycom11g26430
rosa_chinensis	RchiOBHm_Chr6g0293081
rosa_laevigata	RLG00000011973
rosa_multiflora	Rmu_co8222790.1_g000001 Rmu_sc0003615.1_g000004 Rmu_sc0033483.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174440
rosa_rugosa	Rorug06G0232600.1 Rorug06G0232700
rosa_samantha	Rh6AG345400 Rh6BG352900 Rh6CG359400 Rh6DG345400
rosa_wichuraiana	Rw6G030100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1394, 1667
AatII	GACGTC	1 cut(s)	1232
Acc16I	TGCGCA	1 cut(s)	1683
AccB7I	CCANNNNNTGG	2 cut(s)	683, 865
AccBSI	CCGCTC	1 cut(s)	351
AccI	GTMKAC	2 cut(s)	137, 1528
AccIII	TCCGGA	2 cut(s)	343, 1329
AciI	CCGC	8 cut(s)	74, 114, 123, 158, 349, 536, 1312, 1532
AclWI	GGATC	3 cut(s)	332, 345, 1668
AcoI	YGGCCR	1 cut(s)	430
AcsI	RAATTY	7 cut(s)	165, 709, 1109, 1333, 1400, 1634, 2131
AcuI	CTGAAG	5 cut(s)	1398, 1605, 1799, 1806, 1860
AcyI	GRCGYC	2 cut(s)	591, 1229
AfaI	GTAC	3 cut(s)	63, 1924, 2171
AflIII	ACRYGT	2 cut(s)	132, 435
AgsI	TTSAA	8 cut(s)	511, 722, 773, 898, 1107, 1205, 1273, 1820
AhdI	GACNNNNNGTC	1 cut(s)	1831
AhlI	ACTAGT	1 cut(s)	140
AjiI	CACGTC	1 cut(s)	133
AjnI	CCWGG	5 cut(s)	276, 387, 447, 1989, 2077
AjuI	GAANNNNNNNTTGG	2 cut(s)	628, 660
AloI	GAACNNNNNNTCC	2 cut(s)	918, 950
AluBI	AGCT	7 cut(s)	151, 765, 1212, 1280, 1508, 1872, 2108
AluI	AGCT	7 cut(s)	151, 765, 1212, 1280, 1508, 1872, 2108
Alw21I	GWGCWC	2 cut(s)	33, 2126
Alw26I	GTCTC	5 cut(s)	293, 985, 1422, 1612, 2193
AlwI	GGATC	3 cut(s)	332, 345, 1668
AlwNI	CAGNNNCTG	2 cut(s)	154, 1511
Ama87I	CYCGRG	1 cut(s)	2274
Aor13HI	TCCGGA	2 cut(s)	343, 1329
AoxI	GGCC	5 cut(s)	324, 430, 1062, 1189, 2214
ApeKI	GCWGC	7 cut(s)	148, 151, 154, 374, 1277, 1505, 1508
ApoI	RAATTY	7 cut(s)	165, 709, 1109, 1333, 1400, 1634, 2131
AseI	ATTAAT	1 cut(s)	2163
Asp700I	GAANNNNTTC	2 cut(s)	930, 2050
AspLEI	GCGC	1 cut(s)	1684
AspS9I	GGNCC	6 cut(s)	346, 1189, 1346, 1574, 2072, 2150
AsuC2I	CCSGG	2 cut(s)	78, 162
AsuHPI	GGTGA	6 cut(s)	95, 256, 459, 589, 809, 2338
AvaI	CYCGRG	1 cut(s)	2274
AvaII	GGWCC	5 cut(s)	346, 1346, 1574, 2072, 2150
BaeGI	GKGCMC	2 cut(s)	996, 1091
BalI	TGGCCA	1 cut(s)	432
BamHI	GGATCC	1 cut(s)	337
BanII	GRGCYC	2 cut(s)	194, 234
Bbv12I	GWGCWC	2 cut(s)	33, 2126
BbvCI	CCTCAGC	1 cut(s)	1093
BbvI	GCAGC	7 cut(s)	138, 141, 160, 361, 1289, 1495, 1517
BccI	CCATC	1 cut(s)	188
BceAI	ACGGC	1 cut(s)	101
BcgI	CGANNNNNNTGC	4 cut(s)	200, 234, 1742, 1776
BciT130I	CCWGG	5 cut(s)	278, 389, 449, 1991, 2079
BciVI	GTATCC	2 cut(s)	666, 1987
BclI	TGATCA	1 cut(s)	1357
BcnI	CCSGG	2 cut(s)	78, 162
BcoDI	GTCTC	5 cut(s)	293, 985, 1422, 1612, 2193
BcuI	ACTAGT	1 cut(s)	140
BfaI	CTAG	3 cut(s)	141, 788, 1259
BfuI	GTATCC	2 cut(s)	666, 1987
Bme1390I	CCNGG	7 cut(s)	78, 162, 278, 389, 449, 1991, 2079
Bme18I	GGWCC	5 cut(s)	346, 1346, 1574, 2072, 2150
BmeRI	GACNNNNNGTC	1 cut(s)	1831
BmeT110I	CYCGRG	1 cut(s)	2274
BmgBI	CACGTC	1 cut(s)	133
BmgT120I	GGNCC	6 cut(s)	346, 1189, 1346, 1574, 2072, 2150
BmiI	GGNNCC	6 cut(s)	191, 274, 339, 915, 1575, 1935
BmrFI	CCNGG	7 cut(s)	78, 162, 278, 389, 449, 1991, 2079
BplI	GAGNNNNNCTC	2 cut(s)	1400, 1432
BpmI	CTGGAG	1 cut(s)	2253
Bpu10I	CCTNAGC	2 cut(s)	321, 1093
BpuEI	CTTGAG	2 cut(s)	673, 1988
BpuMI	CCSGG	2 cut(s)	78, 162
Bsa29I	ATCGAT	1 cut(s)	1183
BsaBI	GATNNNNATC	1 cut(s)	783
BsaHI	GRCGYC	2 cut(s)	591, 1229
BsaI	GGTCTC	1 cut(s)	1612
BsaJI	CCNNGG	4 cut(s)	276, 387, 1918, 2275
BsaWI	WCCGGW	3 cut(s)	171, 343, 1329
BsaXI	ACNNNNNCTCC	6 cut(s)	918, 948, 963, 993, 1293, 1323
Bse1I	ACTGG	3 cut(s)	30, 367, 2103
Bse3DI	GCAATG	4 cut(s)	399, 1173, 1500, 1765
Bse8I	GATNNNNATC	1 cut(s)	783
BseAI	TCCGGA	2 cut(s)	343, 1329
BseBI	CCWGG	5 cut(s)	278, 389, 449, 1991, 2079
BseCI	ATCGAT	1 cut(s)	1183
BseDI	CCNNGG	4 cut(s)	276, 387, 1918, 2275
BseGI	GGATG	3 cut(s)	1151, 1978, 2332
BseJI	GATNNNNATC	1 cut(s)	783
BseMI	GCAATG	4 cut(s)	399, 1173, 1500, 1765
BseMII	CTCAG	8 cut(s)	335, 635, 1107, 1398, 1778, 2109, 2152, 2336
BseNI	ACTGG	3 cut(s)	30, 367, 2103
BseRI	GAGGAG	3 cut(s)	25, 28, 236
BseSI	GKGCMC	2 cut(s)	996, 1091
BseXI	GCAGC	7 cut(s)	138, 141, 160, 361, 1289, 1495, 1517
BsgI	GTGCAG	1 cut(s)	2000
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	5 cut(s)	326, 432, 1064, 1191, 2216
BshVI	ATCGAT	1 cut(s)	1183
BsiEI	CGRYCG	1 cut(s)	187
BsiHKAI	GWGCWC	2 cut(s)	33, 2126
BsiHKCI	CYCGRG	1 cut(s)	2274
BsiSI	CCGG	6 cut(s)	77, 161, 172, 270, 344, 1330
BslFI	GGGAC	1 cut(s)	1058
BsmAI	GTCTC	5 cut(s)	293, 985, 1422, 1612, 2193
BsmFI	GGGAC	1 cut(s)	1058
BsmI	GAATGC	2 cut(s)	1279, 1912
BsnI	GGCC	5 cut(s)	326, 432, 1064, 1191, 2216
Bso31I	GGTCTC	1 cut(s)	1612
BsoBI	CYCGRG	1 cut(s)	2274
Bsp1286I	GDGCHC	6 cut(s)	33, 194, 234, 996, 1091, 2126
Bsp13I	TCCGGA	2 cut(s)	343, 1329
Bsp1407I	TGTACA	1 cut(s)	2169
Bsp143I	GATC	7 cut(s)	100, 337, 730, 1357, 1660, 1892, 2219
BspACI	CCGC	8 cut(s)	74, 114, 123, 158, 349, 536, 1312, 1532
BspANI	GGCC	5 cut(s)	326, 432, 1064, 1191, 2216
BspCNI	CTCAG	8 cut(s)	334, 634, 1106, 1399, 1777, 2110, 2151, 2335
BspDI	ATCGAT	1 cut(s)	1183
BspEI	TCCGGA	2 cut(s)	343, 1329
BspLI	GGNNCC	6 cut(s)	191, 274, 339, 915, 1575, 1935
BspPI	GGATC	3 cut(s)	332, 345, 1668
BspTNI	GGTCTC	1 cut(s)	1612
BsrBI	CCGCTC	1 cut(s)	351
BsrDI	GCAATG	4 cut(s)	399, 1173, 1500, 1765
BsrGI	TGTACA	1 cut(s)	2169
BsrI	ACTGG	3 cut(s)	30, 367, 2103
BssECI	CCNNGG	4 cut(s)	276, 387, 1918, 2275
BssMI	GATC	7 cut(s)	100, 337, 730, 1357, 1660, 1892, 2219
BssNI	GRCGYC	2 cut(s)	591, 1229
Bst2UI	CCWGG	5 cut(s)	278, 389, 449, 1991, 2079
Bst4CI	ACNGT	7 cut(s)	947, 1051, 1162, 1517, 1614, 1829, 1999
Bst6I	CTCTTC	5 cut(s)	567, 988, 1086, 1148, 2016
BstACI	GRCGYC	2 cut(s)	591, 1229
BstAPI	GCANNNNNTGC	3 cut(s)	154, 1492, 1724
BstAUI	TGTACA	1 cut(s)	2169
BstC8I	GCNNGC	2 cut(s)	1193, 2227
BstDEI	CTNAG	9 cut(s)	321, 621, 701, 1093, 1407, 1764, 2118, 2138, 2322
BstENI	CCTNNNNNAGG	2 cut(s)	667, 2082
BstF5I	GGATG	3 cut(s)	1151, 1978, 2332
BstHHI	GCGC	1 cut(s)	1684
BstKTI	GATC	7 cut(s)	103, 340, 733, 1360, 1663, 1895, 2222
BstMAI	GTCTC	5 cut(s)	293, 985, 1422, 1612, 2193
BstMBI	GATC	7 cut(s)	100, 337, 730, 1357, 1660, 1892, 2219
BstMCI	CGRYCG	1 cut(s)	187
BstNI	CCWGG	5 cut(s)	278, 389, 449, 1991, 2079
BstNSI	RCATGY	2 cut(s)	439, 1199
BstSCI	CCNGG	7 cut(s)	76, 160, 276, 387, 447, 1989, 2077
BstSLI	GKGCMC	2 cut(s)	996, 1091
BstV1I	GCAGC	7 cut(s)	138, 141, 160, 361, 1289, 1495, 1517
BstX2I	RGATCY	2 cut(s)	337, 1660
BstXI	CCANNNNNNTGG	1 cut(s)	334
BstYI	RGATCY	2 cut(s)	337, 1660
Bsu15I	ATCGAT	1 cut(s)	1183
BsuI	GTATCC	2 cut(s)	666, 1987
BsuRI	GGCC	5 cut(s)	326, 432, 1064, 1191, 2216
BsuTUI	ATCGAT	1 cut(s)	1183
BtrI	CACGTC	1 cut(s)	133
BtsCI	GGATG	3 cut(s)	1151, 1978, 2332
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	7 cut(s)	23, 237, 360, 1056, 1404, 1775, 2146
Cac8I	GCNNGC	2 cut(s)	1193, 2227
CaiI	CAGNNNCTG	2 cut(s)	154, 1511
CfoI	GCGC	1 cut(s)	1684
Cfr13I	GGNCC	6 cut(s)	346, 1189, 1346, 1574, 2072, 2150
ClaI	ATCGAT	1 cut(s)	1183
CpoI	CGGWCCG	1 cut(s)	346
CseI	GACGC	1 cut(s)	580
Csp6I	GTAC	3 cut(s)	62, 1923, 2170
CspI	CGGWCCG	1 cut(s)	346
CviAII	CATG	7 cut(s)	436, 725, 1196, 1460, 1559, 1699, 2232
CviQI	GTAC	3 cut(s)	62, 1923, 2170
DdeI	CTNAG	9 cut(s)	321, 621, 701, 1093, 1407, 1764, 2118, 2138, 2322
DpnI	GATC	7 cut(s)	102, 339, 732, 1359, 1662, 1894, 2221
DpnII	GATC	7 cut(s)	100, 337, 730, 1357, 1660, 1892, 2219
DriI	GACNNNNNGTC	1 cut(s)	1831
EaeI	YGGCCR	1 cut(s)	430
Eam1104I	CTCTTC	5 cut(s)	567, 988, 1086, 1148, 2016
Eam1105I	GACNNNNNGTC	1 cut(s)	1831
EarI	CTCTTC	5 cut(s)	567, 988, 1086, 1148, 2016
EciI	GGCGGA	1 cut(s)	1301
Eco24I	GRGCYC	2 cut(s)	194, 234
Eco31I	GGTCTC	1 cut(s)	1612
Eco32I	GATATC	1 cut(s)	1711
Eco47I	GGWCC	5 cut(s)	346, 1346, 1574, 2072, 2150
Eco57I	CTGAAG	5 cut(s)	1398, 1605, 1799, 1806, 1860
Eco88I	CYCGRG	1 cut(s)	2274
EcoNI	CCTNNNNNAGG	2 cut(s)	667, 2082
EcoO109I	RGGNCCY	2 cut(s)	1574, 2150
EcoRI	GAATTC	3 cut(s)	165, 1400, 1634
EcoRII	CCWGG	5 cut(s)	276, 387, 447, 1989, 2077
EcoRV	GATATC	1 cut(s)	1711
EcoT22I	ATGCAT	1 cut(s)	1912
EcoT38I	GRGCYC	2 cut(s)	194, 234
FaeI	CATG	7 cut(s)	439, 728, 1199, 1463, 1562, 1702, 2235
FalI	AAGNNNNNCTT	2 cut(s)	628, 660
FaqI	GGGAC	1 cut(s)	1058
FatI	CATG	7 cut(s)	435, 724, 1195, 1459, 1558, 1698, 2231
FbaI	TGATCA	1 cut(s)	1357
FblI	GTMKAC	2 cut(s)	137, 1528
FokI	GGATG	3 cut(s)	1158, 1985, 2319
FriOI	GRGCYC	2 cut(s)	194, 234
FspBI	CTAG	3 cut(s)	141, 788, 1259
FspI	TGCGCA	1 cut(s)	1683
GlaI	GCGC	1 cut(s)	1683
GsuI	CTGGAG	1 cut(s)	2253
HaeIII	GGCC	5 cut(s)	326, 432, 1064, 1191, 2216
HapII	CCGG	6 cut(s)	77, 161, 172, 270, 344, 1330
HgaI	GACGC	1 cut(s)	580
HhaI	GCGC	1 cut(s)	1684
Hin1I	GRCGYC	2 cut(s)	591, 1229
Hin1II	CATG	7 cut(s)	439, 728, 1199, 1463, 1562, 1702, 2235
Hin6I	GCGC	1 cut(s)	1682
HinP1I	GCGC	1 cut(s)	1682
HincII	GTYRAC	2 cut(s)	837, 943
HindII	GTYRAC	2 cut(s)	837, 943
HindIII	AAGCTT	1 cut(s)	1870
HpaI	GTTAAC	1 cut(s)	943
HpaII	CCGG	6 cut(s)	77, 161, 172, 270, 344, 1330
HphI	GGTGA	6 cut(s)	95, 256, 459, 589, 809, 2338
Hpy166II	GTNNAC	6 cut(s)	138, 568, 837, 943, 1349, 1529
Hpy188III	TCNNGA	9 cut(s)	209, 344, 692, 737, 1014, 1330, 1751, 1967, 2209
Hpy8I	GTNNAC	6 cut(s)	138, 568, 837, 943, 1349, 1529
Hpy99I	CGWCG	6 cut(s)	98, 101, 122, 215, 596, 1231
HpyAV	CCTTC	5 cut(s)	1337, 1517, 1618, 1748, 2206
HpyCH4III	ACNGT	7 cut(s)	947, 1051, 1162, 1517, 1614, 1829, 1999
HpyCH4IV	ACGT	3 cut(s)	132, 1229, 1546
HpyF3I	CTNAG	9 cut(s)	321, 621, 701, 1093, 1407, 1764, 2118, 2138, 2322
HpySE526I	ACGT	3 cut(s)	132, 1229, 1546
Hsp92I	GRCGYC	2 cut(s)	591, 1229
Hsp92II	CATG	7 cut(s)	439, 728, 1199, 1463, 1562, 1702, 2235
HspAI	GCGC	1 cut(s)	1682
Kpn2I	TCCGGA	2 cut(s)	343, 1329
Ksp22I	TGATCA	1 cut(s)	1357
KspAI	GTTAAC	1 cut(s)	943
Kzo9I	GATC	7 cut(s)	100, 337, 730, 1357, 1660, 1892, 2219
LmnI	GCTCC	5 cut(s)	189, 278, 356, 2129, 2272
Lsp1109I	GCAGC	7 cut(s)	138, 141, 160, 361, 1289, 1495, 1517
MaeI	CTAG	3 cut(s)	141, 788, 1259
MaeII	ACGT	3 cut(s)	132, 1229, 1546
MaeIII	GTNAC	1 cut(s)	2004
MalI	GATC	7 cut(s)	102, 339, 732, 1359, 1662, 1894, 2221
MbiI	CCGCTC	1 cut(s)	351
MboI	GATC	7 cut(s)	100, 337, 730, 1357, 1660, 1892, 2219
MflI	RGATCY	2 cut(s)	337, 1660
MhlI	GDGCHC	6 cut(s)	33, 194, 234, 996, 1091, 2126
MlsI	TGGCCA	1 cut(s)	432
MluNI	TGGCCA	1 cut(s)	432
MlyI	GAGTC	4 cut(s)	102, 209, 689, 2189
MmeI	TCCRAC	3 cut(s)	117, 167, 606
Mox20I	TGGCCA	1 cut(s)	432
Mph1103I	ATGCAT	1 cut(s)	1912
MroI	TCCGGA	2 cut(s)	343, 1329
MroXI	GAANNNNTTC	2 cut(s)	930, 2050
MscI	TGGCCA	1 cut(s)	432
MseI	TTAA	3 cut(s)	483, 942, 2163
MslI	CAYNNNNRTG	3 cut(s)	332, 1320, 2230
Msp20I	TGGCCA	1 cut(s)	432
MspA1I	CMGCKG	3 cut(s)	125, 151, 1508
MspI	CCGG	6 cut(s)	77, 161, 172, 270, 344, 1330
MspR9I	CCNGG	7 cut(s)	78, 162, 278, 389, 449, 1991, 2079
Mva1269I	GAATGC	2 cut(s)	1279, 1912
MvaI	CCWGG	5 cut(s)	278, 389, 449, 1991, 2079
NciI	CCSGG	2 cut(s)	78, 162
NdeII	GATC	7 cut(s)	100, 337, 730, 1357, 1660, 1892, 2219
NlaIII	CATG	7 cut(s)	439, 728, 1199, 1463, 1562, 1702, 2235
NlaIV	GGNNCC	6 cut(s)	191, 274, 339, 915, 1575, 1935
NmeAIII	GCCGAG	1 cut(s)	1728
NsbI	TGCGCA	1 cut(s)	1683
NsiI	ATGCAT	1 cut(s)	1912
NspI	RCATGY	2 cut(s)	439, 1199
PciI	ACATGT	1 cut(s)	435
PctI	GAATGC	2 cut(s)	1279, 1912
PdmI	GAANNNNTTC	2 cut(s)	930, 2050
PfeI	GAWTC	8 cut(s)	1436, 1466, 1747, 1790, 1820, 1855, 2258, 2291
PflFI	GACNNNGTC	1 cut(s)	1228
PflMI	CCANNNNNTGG	2 cut(s)	683, 865
PfoI	TCCNGGA	2 cut(s)	1989, 2077
PleI	GAGTC	4 cut(s)	102, 209, 689, 2188
PpsI	GAGTC	4 cut(s)	102, 209, 689, 2188
PpuMI	RGGWCCY	2 cut(s)	1574, 2150
PscI	ACATGT	1 cut(s)	435
PshBI	ATTAAT	1 cut(s)	2163
PsiI	TTATAA	2 cut(s)	1394, 1667
Psp5II	RGGWCCY	2 cut(s)	1574, 2150
Psp6I	CCWGG	5 cut(s)	276, 387, 447, 1989, 2077
PspGI	CCWGG	5 cut(s)	276, 387, 447, 1989, 2077
PspN4I	GGNNCC	6 cut(s)	191, 274, 339, 915, 1575, 1935
PspPI	GGNCC	6 cut(s)	346, 1189, 1346, 1574, 2072, 2150
PspPPI	RGGWCCY	2 cut(s)	1574, 2150
PstNI	CAGNNNCTG	2 cut(s)	154, 1511
PsuI	RGATCY	2 cut(s)	337, 1660
PsyI	GACNNNGTC	1 cut(s)	1228
PvuII	CAGCTG	2 cut(s)	151, 1508
RsaI	GTAC	3 cut(s)	63, 1924, 2171
RsaNI	GTAC	3 cut(s)	62, 1923, 2170
RseI	CAYNNNNRTG	3 cut(s)	332, 1320, 2230
Rsr2I	CGGWCCG	1 cut(s)	346
RsrII	CGGWCCG	1 cut(s)	346
SaqAI	TTAA	3 cut(s)	483, 942, 2163
Sau3AI	GATC	7 cut(s)	100, 337, 730, 1357, 1660, 1892, 2219
Sau96I	GGNCC	6 cut(s)	346, 1189, 1346, 1574, 2072, 2150
SchI	GAGTC	4 cut(s)	102, 209, 689, 2189
ScrFI	CCNGG	7 cut(s)	78, 162, 278, 389, 449, 1991, 2079
SduI	GDGCHC	6 cut(s)	33, 194, 234, 996, 1091, 2126
SinI	GGWCC	5 cut(s)	346, 1346, 1574, 2072, 2150
SmiMI	CAYNNNNRTG	3 cut(s)	332, 1320, 2230
SmlI	CTYRAG	2 cut(s)	652, 1967
SmoI	CTYRAG	2 cut(s)	652, 1967
SpeI	ACTAGT	1 cut(s)	140
SsiI	CCGC	8 cut(s)	74, 114, 123, 158, 349, 536, 1312, 1532
SspI	AATATT	1 cut(s)	1059
SspMI	CTAG	3 cut(s)	141, 788, 1259
StyD4I	CCNGG	7 cut(s)	76, 160, 276, 387, 447, 1989, 2077
TaaI	ACNGT	7 cut(s)	947, 1051, 1162, 1517, 1614, 1829, 1999
TaiI	ACGT	3 cut(s)	135, 1232, 1549
TaqI	TCGA	2 cut(s)	210, 1183
TaqII	GACCGA	1 cut(s)	173
TatI	WGTACW	1 cut(s)	2169
TauI	GCSGC	5 cut(s)	76, 116, 125, 160, 539
TfiI	GAWTC	8 cut(s)	1436, 1466, 1747, 1790, 1820, 1855, 2258, 2291
Tru1I	TTAA	3 cut(s)	483, 942, 2163
Tru9I	TTAA	3 cut(s)	483, 942, 2163
TscAI	CASTG	7 cut(s)	30, 244, 367, 1056, 1411, 1782, 2146
TseI	GCWGC	7 cut(s)	148, 151, 154, 374, 1277, 1505, 1508
TspDTI	ATGAA	6 cut(s)	741, 1489, 1575, 1687, 2022, 2265
TspGWI	ACGGA	1 cut(s)	49
TspRI	CASTG	7 cut(s)	30, 244, 367, 1056, 1411, 1782, 2146
Tth111I	GACNNNGTC	1 cut(s)	1228
Van91I	CCANNNNNTGG	2 cut(s)	683, 865
VpaK11BI	GGWCC	5 cut(s)	346, 1346, 1574, 2072, 2150
VspI	ATTAAT	1 cut(s)	2163
XagI	CCTNNNNNAGG	2 cut(s)	667, 2082
XapI	RAATTY	7 cut(s)	165, 709, 1109, 1333, 1400, 1634, 2131
XceI	RCATGY	2 cut(s)	439, 1199
XmiI	GTMKAC	2 cut(s)	137, 1528
XmnI	GAANNNNTTC	2 cut(s)	930, 2050
XspI	CTAG	3 cut(s)	141, 788, 1259
ZraI	GACGTC	1 cut(s)	1230
Zsp2I	ATGCAT	1 cut(s)	1912

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.