Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0006884

Physical Location & Seq

Genomic Coordinates Forward (+)

54794363 .. 54799080

Gene Structure 4718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG345400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2268 bp

ATGGTGGGGAGGAGGAGGAAGCCACTGGTACTCACTTCCACCAAAACTCTCATCAAATCCGTACTGACTTCGCCGCCGGGAGAACTCACTTCCGACGACGATCACCGACTCTCCGCCGTCGCCGCTGATGACGTGTCTACTAGTTTGCAGCTGCTGCCGCCGGGAATTCTCCGGTTCTCCATCGGTCGGAGCCCCAAATTGGCTTCTCTCGACGACTCTGCTCTCGTCGGCCTCTCCACTTCTCTCCTCAAACGCCTCTGCATCACCTCCGGCTCCCTGGTGCTTGTGAAGAATATGGAGACAAAAATAGAAAGAATTGCTCAGGCCATTGTTGTGGATCCTCCGGACCGCTCCGAGAACACTGGACTATCTGCTGCCCAATCTTCCCAGGCAATGCTTATTCTGCCTTGTTGCACTTTCCCTGAAAATGGCCACATGTTGTTAGACCGGGAAGTTGCCTATATATCACCTCTGTTGGCATTTAACATTGACTTGCATACATTGTGCTTGAAATCGCTTGTCCATAGAGGGGAAGCGGTGTTGGCATCTTATTTCGGGGATAGAGTGGACGAAGAGGTGAGTGGGAAAGGCGTCGGGGCTTCTGTGATTGGAATACAACCTCAGTCGGAGTTGCCAAGATATGCTTCGCACTTGAGGGCTTCCTTTGTGAGGATACCAGAATGTGGTAGTCTTGACTCTCTTAGAGGAAATTCGGCTGTTGAACATGAAGATCGTCAAGAAATGATAGATTTGGCACTACATAGCTACTTTGAAGTTGATAGGTATCTAGCAAGAGGTGATGTTTTCAGTATTTGTATAAAATGGAATTGCAAGTCAACGATTTGCGTTCCTTGCAACCAAAGTTTGGAAAATGGGGTTGATAACACTATCTATTTCAAGGTTGTGGCTATGGAACCTTTGGACGAACCAATTCTCCGAGTTAACCGTTCTCAAACTGCCCTTGTGCTTGGAGGAAGTGTCTCTTCTGCTGTGCCCCCTGATTTATTGATTTCTGGACAAAAAGGTTTCACACCCTTGCAAGGGGACACAGTGAAAATATTGGCCTCCATACTTACACCTCTTCTGTGCCCCTCAGCACTATCTTCAAAATTCAGAGTTTCTGTTCTGTTGTATGGATTGGCAGGATGTGGGAAGAGAACAGTTGTTAGATACATTGCTCGTCGATTGGGCCTGCATGTAGTTGAATATAGCTGTCATAATCTGACGATGTCATCTGAAAAAAAGATGTCTGTTGCACTAGCCCAAACCTTGAATGCAGCTCAAAGATACTCGCCAACTATACTTCTTCTCCGCCATTTTGATGTTTTCCGGAATTTGCACGAAGGTTCACCAAATGATCAAGTTGGCATCACTTCTGAAGTTGCATCACTTATAAGGGAATTCACTGAGCCAATCTCTGATTATGGAGACATTGATTCTGAACAAAAACAAAATGGTCATGTTGATTCTGGGAAGATAGGTAGGCATCAAGTGCTGTTCATTGCAGCTGCTGACAGTTCAGAAGGTCTACCGCCAACTATTAGACGTTGCTTTAGCCATGAAATAAGTATGGGTCCTTTGACTGAAGAACAAAGGGTTAGAATGGTCTCACAGTCTTTGCAGAAGGCTTCTGAATTCCTTTCTAATACTAATTCAGAGGATCTTATAAAGGATATAGTTGCGCTGACATCTGGTTTCATGCCTAGAGATATATGTGCATTGGTTGCTGATGCTGGTGCAAACTTGATTCCCAAAGGCAATGCTCAGATTGATACAGTGAAGTCTGAAGAATCAGATGCTTCTCTCACAAATAATGTTGAATCAGACAGTAAGTCCTCTGAAGTTGCATCTCCGATTCTGGGGAAAGAAAGCTTGACAAAAGCATTGGAAAGATCAAAGAAAAGGAATGCATCAGCCCTCGGTACTCCAAAGGTTCCTGATGTGAAATGGGAAGATGTTGGTGGTCTTGAGGATGTGAAGAAATCAATCCTGGATACTGTTCAGTTACCTCTTCTGCACAAGGACTTGTTTTCATCTGGCTTACGAAAGCGTTCTGGTGTTCTTCTGTATGGTCCTCCTGGAACAGGGAAAGCCAGATCAGCACGCCCATGTGTTATATTTTTTGATGAACTTGATTCTCTTGCTCCAGCCCGAGGTGCATCTGGGGATTCTGGGGGTGTTATGGACAGAGTGGTTTCTCAGATGCTTGCAGAGATTGATGGCCTAAATGATTCGAGTCAGGTGTTTTGCTCTGTCTTTTTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042886 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

AAA

Protein Analysis

755

Amino Acids

81.61

Weight (kDa)

6.07

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	375 - 524	4.5e-13	ATPase family associated with various cellular activities (AAA)
AAA	PF00004	698 - 748	5.6e-08	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0006884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03000
fragaria_vesca	FvH4_2g25060 FvH4_2g25060 FvH4_2g25060 FvH4_2g25060 FvH4_2g25060 FvH4_2g25060 FvH4_2g25060
malus_domestica	MD11G1301700.v1.1
prunus_persica	Prupe.8G255300_v2.0.a1 Prupe.8G255300_v2.0.a1 Prupe.8G255300_v2.0.a1
pyrus_communis	pycom11g26430
rosa_chinensis	RchiOBHm_Chr6g0293081
rosa_laevigata	RLG00000011973
rosa_multiflora	Rmu_co8222790.1_g000001 Rmu_sc0003615.1_g000004 Rmu_sc0033483.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174440
rosa_rugosa	Rorug06G0232600.1 Rorug06G0232700
rosa_samantha	Rh6AG345400 Rh6BG352900 Rh6CG359400 Rh6DG345400
rosa_wichuraiana	Rw6G030100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1394, 1667
AccB7I	CCANNNNNTGG	2 cut(s)	683, 865
AccBSI	CCGCTC	1 cut(s)	351
AccI	GTMKAC	2 cut(s)	137, 1528
AccIII	TCCGGA	2 cut(s)	343, 1329
AciI	CCGC	8 cut(s)	74, 114, 123, 158, 349, 536, 1312, 1532
AclWI	GGATC	3 cut(s)	332, 345, 1668
AcoI	YGGCCR	1 cut(s)	430
AcsI	RAATTY	6 cut(s)	165, 709, 1109, 1333, 1400, 1634
AcuI	CTGAAG	4 cut(s)	1398, 1605, 1806, 1860
AcyI	GRCGYC	1 cut(s)	591
AfaI	GTAC	3 cut(s)	30, 63, 1924
AflIII	ACRYGT	2 cut(s)	132, 435
AgsI	TTSAA	8 cut(s)	511, 722, 773, 898, 1107, 1205, 1273, 1820
AhdI	GACNNNNNGTC	1 cut(s)	1831
AhlI	ACTAGT	1 cut(s)	140
AjiI	CACGTC	1 cut(s)	133
AjnI	CCWGG	4 cut(s)	276, 387, 1989, 2077
AjuI	GAANNNNNNNTTGG	2 cut(s)	628, 660
AloI	GAACNNNNNNTCC	2 cut(s)	918, 950
AluBI	AGCT	6 cut(s)	151, 765, 1212, 1280, 1508, 1872
AluI	AGCT	6 cut(s)	151, 765, 1212, 1280, 1508, 1872
Alw26I	GTCTC	4 cut(s)	293, 985, 1422, 1612
AlwI	GGATC	3 cut(s)	332, 345, 1668
AlwNI	CAGNNNCTG	2 cut(s)	154, 1511
Ama87I	CYCGRG	1 cut(s)	2151
Aor13HI	TCCGGA	2 cut(s)	343, 1329
AoxI	GGCC	6 cut(s)	229, 324, 430, 1062, 1189, 2221
ApeKI	GCWGC	7 cut(s)	148, 151, 154, 374, 1277, 1505, 1508
ApoI	RAATTY	6 cut(s)	165, 709, 1109, 1333, 1400, 1634
Asp700I	GAANNNNTTC	2 cut(s)	930, 2050
AspLEI	GCGC	1 cut(s)	1684
AspS9I	GGNCC	4 cut(s)	346, 1189, 1574, 2072
AsuC2I	CCSGG	3 cut(s)	78, 162, 449
AsuHPI	GGTGA	6 cut(s)	95, 256, 459, 589, 809, 1341
AvaI	CYCGRG	1 cut(s)	2151
AvaII	GGWCC	3 cut(s)	346, 1574, 2072
BaeGI	GKGCMC	2 cut(s)	996, 1091
BalI	TGGCCA	1 cut(s)	432
BamHI	GGATCC	1 cut(s)	337
BanII	GRGCYC	1 cut(s)	194
BbvCI	CCTCAGC	1 cut(s)	1093
BbvI	GCAGC	7 cut(s)	138, 141, 160, 361, 1289, 1495, 1517
BccI	CCATC	2 cut(s)	188, 2213
BceAI	ACGGC	1 cut(s)	101
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BciT130I	CCWGG	4 cut(s)	278, 389, 1991, 2079
BciVI	GTATCC	2 cut(s)	666, 1987
BclI	TGATCA	1 cut(s)	1357
BcnI	CCSGG	3 cut(s)	78, 162, 449
BcoDI	GTCTC	4 cut(s)	293, 985, 1422, 1612
BcuI	ACTAGT	1 cut(s)	140
BfaI	CTAG	4 cut(s)	141, 788, 1259, 1704
BfuI	GTATCC	2 cut(s)	666, 1987
Bme1390I	CCNGG	7 cut(s)	78, 162, 278, 389, 449, 1991, 2079
Bme18I	GGWCC	3 cut(s)	346, 1574, 2072
BmeRI	GACNNNNNGTC	1 cut(s)	1831
BmeT110I	CYCGRG	1 cut(s)	2151
BmgBI	CACGTC	1 cut(s)	133
BmgT120I	GGNCC	4 cut(s)	346, 1189, 1574, 2072
BmiI	GGNNCC	6 cut(s)	191, 274, 339, 915, 1575, 1935
BmrFI	CCNGG	7 cut(s)	78, 162, 278, 389, 449, 1991, 2079
BplI	GAGNNNNNCTC	2 cut(s)	1400, 1432
BpmI	CTGGAG	1 cut(s)	2130
Bpu10I	CCTNAGC	2 cut(s)	321, 1093
BpuEI	CTTGAG	2 cut(s)	673, 1988
BpuMI	CCSGG	3 cut(s)	78, 162, 449
BsaBI	GATNNNNATC	1 cut(s)	783
BsaHI	GRCGYC	1 cut(s)	591
BsaI	GGTCTC	1 cut(s)	1612
BsaJI	CCNNGG	4 cut(s)	276, 387, 1918, 2152
BsaWI	WCCGGW	3 cut(s)	171, 343, 1329
BsaXI	ACNNNNNCTCC	8 cut(s)	95, 125, 918, 948, 963, 993, 1293, 1323
Bse1I	ACTGG	2 cut(s)	30, 367
Bse3DI	GCAATG	4 cut(s)	399, 1173, 1500, 1765
Bse8I	GATNNNNATC	1 cut(s)	783
BseAI	TCCGGA	2 cut(s)	343, 1329
BseBI	CCWGG	4 cut(s)	278, 389, 1991, 2079
BseDI	CCNNGG	4 cut(s)	276, 387, 1918, 2152
BseGI	GGATG	2 cut(s)	1151, 1978
BseJI	GATNNNNATC	1 cut(s)	783
BseMI	GCAATG	4 cut(s)	399, 1173, 1500, 1765
BseMII	CTCAG	6 cut(s)	335, 635, 1107, 1398, 1778, 2213
BseNI	ACTGG	2 cut(s)	30, 367
BseRI	GAGGAG	3 cut(s)	25, 28, 236
BseSI	GKGCMC	2 cut(s)	996, 1091
BseXI	GCAGC	7 cut(s)	138, 141, 160, 361, 1289, 1495, 1517
BsgI	GTGCAG	1 cut(s)	2000
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	6 cut(s)	231, 326, 432, 1064, 1191, 2223
BsiEI	CGRYCG	1 cut(s)	187
BsiHKCI	CYCGRG	1 cut(s)	2151
BsiSI	CCGG	7 cut(s)	77, 161, 172, 270, 344, 448, 1330
BslFI	GGGAC	1 cut(s)	1058
BsmAI	GTCTC	4 cut(s)	293, 985, 1422, 1612
BsmFI	GGGAC	1 cut(s)	1058
BsmI	GAATGC	2 cut(s)	1279, 1912
BsnI	GGCC	6 cut(s)	231, 326, 432, 1064, 1191, 2223
Bso31I	GGTCTC	1 cut(s)	1612
BsoBI	CYCGRG	1 cut(s)	2151
Bsp1286I	GDGCHC	3 cut(s)	194, 996, 1091
Bsp13I	TCCGGA	2 cut(s)	343, 1329
Bsp143I	GATC	7 cut(s)	100, 337, 730, 1357, 1660, 1892, 2096
BspACI	CCGC	8 cut(s)	74, 114, 123, 158, 349, 536, 1312, 1532
BspANI	GGCC	6 cut(s)	231, 326, 432, 1064, 1191, 2223
BspCNI	CTCAG	6 cut(s)	334, 634, 1106, 1399, 1777, 2212
BspEI	TCCGGA	2 cut(s)	343, 1329
BspLI	GGNNCC	6 cut(s)	191, 274, 339, 915, 1575, 1935
BspPI	GGATC	3 cut(s)	332, 345, 1668
BspTNI	GGTCTC	1 cut(s)	1612
BsrBI	CCGCTC	1 cut(s)	351
BsrDI	GCAATG	4 cut(s)	399, 1173, 1500, 1765
BsrI	ACTGG	2 cut(s)	30, 367
BssECI	CCNNGG	4 cut(s)	276, 387, 1918, 2152
BssMI	GATC	7 cut(s)	100, 337, 730, 1357, 1660, 1892, 2096
BssNI	GRCGYC	1 cut(s)	591
Bst2UI	CCWGG	4 cut(s)	278, 389, 1991, 2079
Bst4CI	ACNGT	8 cut(s)	947, 1051, 1162, 1517, 1614, 1777, 1829, 1999
Bst6I	CTCTTC	5 cut(s)	567, 988, 1086, 1148, 2016
BstACI	GRCGYC	1 cut(s)	591
BstAPI	GCANNNNNTGC	3 cut(s)	154, 1492, 1724
BstC8I	GCNNGC	3 cut(s)	1193, 2104, 2208
BstDEI	CTNAG	7 cut(s)	321, 621, 701, 1093, 1407, 1764, 2199
BstENI	CCTNNNNNAGG	2 cut(s)	667, 2082
BstF5I	GGATG	2 cut(s)	1151, 1978
BstHHI	GCGC	1 cut(s)	1684
BstKTI	GATC	7 cut(s)	103, 340, 733, 1360, 1663, 1895, 2099
BstMAI	GTCTC	4 cut(s)	293, 985, 1422, 1612
BstMBI	GATC	7 cut(s)	100, 337, 730, 1357, 1660, 1892, 2096
BstMCI	CGRYCG	1 cut(s)	187
BstNI	CCWGG	4 cut(s)	278, 389, 1991, 2079
BstNSI	RCATGY	2 cut(s)	439, 1199
BstSCI	CCNGG	7 cut(s)	76, 160, 276, 387, 447, 1989, 2077
BstSLI	GKGCMC	2 cut(s)	996, 1091
BstV1I	GCAGC	7 cut(s)	138, 141, 160, 361, 1289, 1495, 1517
BstX2I	RGATCY	2 cut(s)	337, 1660
BstXI	CCANNNNNNTGG	1 cut(s)	334
BstYI	RGATCY	2 cut(s)	337, 1660
BsuI	GTATCC	2 cut(s)	666, 1987
BsuRI	GGCC	6 cut(s)	231, 326, 432, 1064, 1191, 2223
BtrI	CACGTC	1 cut(s)	133
BtsCI	GGATG	2 cut(s)	1151, 1978
BtsIMutI	CAGTG	5 cut(s)	23, 360, 1056, 1404, 1782
Cac8I	GCNNGC	3 cut(s)	1193, 2104, 2208
CaiI	CAGNNNCTG	2 cut(s)	154, 1511
CfoI	GCGC	1 cut(s)	1684
Cfr13I	GGNCC	4 cut(s)	346, 1189, 1574, 2072
CpoI	CGGWCCG	1 cut(s)	346
CseI	GACGC	1 cut(s)	580
Csp6I	GTAC	3 cut(s)	29, 62, 1923
CspI	CGGWCCG	1 cut(s)	346
CviAII	CATG	7 cut(s)	436, 725, 1196, 1460, 1559, 1699, 2109
CviQI	GTAC	3 cut(s)	29, 62, 1923
DdeI	CTNAG	7 cut(s)	321, 621, 701, 1093, 1407, 1764, 2199
DpnI	GATC	7 cut(s)	102, 339, 732, 1359, 1662, 1894, 2098
DpnII	GATC	7 cut(s)	100, 337, 730, 1357, 1660, 1892, 2096
DriI	GACNNNNNGTC	1 cut(s)	1831
EaeI	YGGCCR	1 cut(s)	430
Eam1104I	CTCTTC	5 cut(s)	567, 988, 1086, 1148, 2016
Eam1105I	GACNNNNNGTC	1 cut(s)	1831
EarI	CTCTTC	5 cut(s)	567, 988, 1086, 1148, 2016
EciI	GGCGGA	2 cut(s)	103, 1301
Eco24I	GRGCYC	1 cut(s)	194
Eco31I	GGTCTC	1 cut(s)	1612
Eco47I	GGWCC	3 cut(s)	346, 1574, 2072
Eco57I	CTGAAG	4 cut(s)	1398, 1605, 1806, 1860
Eco88I	CYCGRG	1 cut(s)	2151
EcoNI	CCTNNNNNAGG	2 cut(s)	667, 2082
EcoO109I	RGGNCCY	1 cut(s)	1574
EcoRI	GAATTC	3 cut(s)	165, 1400, 1634
EcoRII	CCWGG	4 cut(s)	276, 387, 1989, 2077
EcoT22I	ATGCAT	1 cut(s)	1912
EcoT38I	GRGCYC	1 cut(s)	194
FaeI	CATG	7 cut(s)	439, 728, 1199, 1463, 1562, 1702, 2112
FalI	AAGNNNNNCTT	4 cut(s)	628, 660, 967, 999
FaqI	GGGAC	1 cut(s)	1058
FatI	CATG	7 cut(s)	435, 724, 1195, 1459, 1558, 1698, 2108
FbaI	TGATCA	1 cut(s)	1357
FblI	GTMKAC	2 cut(s)	137, 1528
FokI	GGATG	2 cut(s)	1158, 1985
FriOI	GRGCYC	1 cut(s)	194
FspBI	CTAG	4 cut(s)	141, 788, 1259, 1704
GlaI	GCGC	1 cut(s)	1683
GsuI	CTGGAG	1 cut(s)	2130
HaeIII	GGCC	6 cut(s)	231, 326, 432, 1064, 1191, 2223
HapII	CCGG	7 cut(s)	77, 161, 172, 270, 344, 448, 1330
HgaI	GACGC	1 cut(s)	580
HhaI	GCGC	1 cut(s)	1684
Hin1I	GRCGYC	1 cut(s)	591
Hin1II	CATG	7 cut(s)	439, 728, 1199, 1463, 1562, 1702, 2112
Hin6I	GCGC	1 cut(s)	1682
HinP1I	GCGC	1 cut(s)	1682
HincII	GTYRAC	2 cut(s)	837, 943
HindII	GTYRAC	2 cut(s)	837, 943
HindIII	AAGCTT	1 cut(s)	1870
HpaI	GTTAAC	1 cut(s)	943
HpaII	CCGG	7 cut(s)	77, 161, 172, 270, 344, 448, 1330
HphI	GGTGA	6 cut(s)	95, 256, 459, 589, 809, 1341
Hpy166II	GTNNAC	6 cut(s)	138, 568, 837, 943, 1349, 1529
Hpy188III	TCNNGA	8 cut(s)	209, 344, 692, 737, 1014, 1330, 1937, 1967
Hpy8I	GTNNAC	6 cut(s)	138, 568, 837, 943, 1349, 1529
Hpy99I	CGWCG	7 cut(s)	98, 101, 122, 215, 230, 596, 1185
HpyAV	CCTTC	3 cut(s)	1337, 1517, 1618
HpyCH4III	ACNGT	8 cut(s)	947, 1051, 1162, 1517, 1614, 1777, 1829, 1999
HpyCH4IV	ACGT	2 cut(s)	132, 1546
HpyF3I	CTNAG	7 cut(s)	321, 621, 701, 1093, 1407, 1764, 2199
HpySE526I	ACGT	2 cut(s)	132, 1546
Hsp92I	GRCGYC	1 cut(s)	591
Hsp92II	CATG	7 cut(s)	439, 728, 1199, 1463, 1562, 1702, 2112
HspAI	GCGC	1 cut(s)	1682
Kpn2I	TCCGGA	2 cut(s)	343, 1329
Ksp22I	TGATCA	1 cut(s)	1357
KspAI	GTTAAC	1 cut(s)	943
Kzo9I	GATC	7 cut(s)	100, 337, 730, 1357, 1660, 1892, 2096
LmnI	GCTCC	4 cut(s)	189, 278, 356, 2149
Lsp1109I	GCAGC	7 cut(s)	138, 141, 160, 361, 1289, 1495, 1517
MaeI	CTAG	4 cut(s)	141, 788, 1259, 1704
MaeII	ACGT	2 cut(s)	132, 1546
MaeIII	GTNAC	1 cut(s)	2004
MalI	GATC	7 cut(s)	102, 339, 732, 1359, 1662, 1894, 2098
MbiI	CCGCTC	1 cut(s)	351
MboI	GATC	7 cut(s)	100, 337, 730, 1357, 1660, 1892, 2096
MflI	RGATCY	2 cut(s)	337, 1660
MhlI	GDGCHC	3 cut(s)	194, 996, 1091
MlsI	TGGCCA	1 cut(s)	432
MluNI	TGGCCA	1 cut(s)	432
MlyI	GAGTC	4 cut(s)	102, 209, 689, 2245
MmeI	TCCRAC	3 cut(s)	117, 167, 606
Mox20I	TGGCCA	1 cut(s)	432
Mph1103I	ATGCAT	1 cut(s)	1912
MroI	TCCGGA	2 cut(s)	343, 1329
MroXI	GAANNNNTTC	2 cut(s)	930, 2050
MscI	TGGCCA	1 cut(s)	432
MseI	TTAA	2 cut(s)	483, 942
MslI	CAYNNNNRTG	3 cut(s)	332, 1320, 2107
Msp20I	TGGCCA	1 cut(s)	432
MspA1I	CMGCKG	3 cut(s)	125, 151, 1508
MspI	CCGG	7 cut(s)	77, 161, 172, 270, 344, 448, 1330
MspR9I	CCNGG	7 cut(s)	78, 162, 278, 389, 449, 1991, 2079
Mva1269I	GAATGC	2 cut(s)	1279, 1912
MvaI	CCWGG	4 cut(s)	278, 389, 1991, 2079
NciI	CCSGG	3 cut(s)	78, 162, 449
NdeII	GATC	7 cut(s)	100, 337, 730, 1357, 1660, 1892, 2096
NlaIII	CATG	7 cut(s)	439, 728, 1199, 1463, 1562, 1702, 2112
NlaIV	GGNNCC	6 cut(s)	191, 274, 339, 915, 1575, 1935
NsiI	ATGCAT	1 cut(s)	1912
NspI	RCATGY	2 cut(s)	439, 1199
PciI	ACATGT	1 cut(s)	435
PctI	GAATGC	2 cut(s)	1279, 1912
PdmI	GAANNNNTTC	2 cut(s)	930, 2050
PfeI	GAWTC	9 cut(s)	1436, 1466, 1747, 1790, 1820, 1855, 2135, 2168, 2231
PflFI	GACNNNGTC	1 cut(s)	1228
PflMI	CCANNNNNTGG	2 cut(s)	683, 865
PfoI	TCCNGGA	2 cut(s)	1989, 2077
PleI	GAGTC	4 cut(s)	102, 209, 689, 2244
PpsI	GAGTC	4 cut(s)	102, 209, 689, 2244
PpuMI	RGGWCCY	1 cut(s)	1574
PscI	ACATGT	1 cut(s)	435
PsiI	TTATAA	2 cut(s)	1394, 1667
Psp5II	RGGWCCY	1 cut(s)	1574
Psp6I	CCWGG	4 cut(s)	276, 387, 1989, 2077
PspGI	CCWGG	4 cut(s)	276, 387, 1989, 2077
PspN4I	GGNNCC	6 cut(s)	191, 274, 339, 915, 1575, 1935
PspPI	GGNCC	4 cut(s)	346, 1189, 1574, 2072
PspPPI	RGGWCCY	1 cut(s)	1574
PstNI	CAGNNNCTG	2 cut(s)	154, 1511
PsuI	RGATCY	2 cut(s)	337, 1660
PsyI	GACNNNGTC	1 cut(s)	1228
PvuII	CAGCTG	2 cut(s)	151, 1508
RsaI	GTAC	3 cut(s)	30, 63, 1924
RsaNI	GTAC	3 cut(s)	29, 62, 1923
RseI	CAYNNNNRTG	3 cut(s)	332, 1320, 2107
Rsr2I	CGGWCCG	1 cut(s)	346
RsrII	CGGWCCG	1 cut(s)	346
SaqAI	TTAA	2 cut(s)	483, 942
Sau3AI	GATC	7 cut(s)	100, 337, 730, 1357, 1660, 1892, 2096
Sau96I	GGNCC	4 cut(s)	346, 1189, 1574, 2072
SchI	GAGTC	4 cut(s)	102, 209, 689, 2245
ScrFI	CCNGG	7 cut(s)	78, 162, 278, 389, 449, 1991, 2079
SduI	GDGCHC	3 cut(s)	194, 996, 1091
SinI	GGWCC	3 cut(s)	346, 1574, 2072
SmiMI	CAYNNNNRTG	3 cut(s)	332, 1320, 2107
SmlI	CTYRAG	2 cut(s)	652, 1967
SmoI	CTYRAG	2 cut(s)	652, 1967
SpeI	ACTAGT	1 cut(s)	140
SsiI	CCGC	8 cut(s)	74, 114, 123, 158, 349, 536, 1312, 1532
SspI	AATATT	1 cut(s)	1059
SspMI	CTAG	4 cut(s)	141, 788, 1259, 1704
StyD4I	CCNGG	7 cut(s)	76, 160, 276, 387, 447, 1989, 2077
TaaI	ACNGT	8 cut(s)	947, 1051, 1162, 1517, 1614, 1777, 1829, 1999
TaiI	ACGT	2 cut(s)	135, 1549
TaqI	TCGA	3 cut(s)	210, 1183, 2234
TaqII	GACCGA	1 cut(s)	173
TauI	GCSGC	3 cut(s)	76, 125, 160
TfiI	GAWTC	9 cut(s)	1436, 1466, 1747, 1790, 1820, 1855, 2135, 2168, 2231
Tru1I	TTAA	2 cut(s)	483, 942
Tru9I	TTAA	2 cut(s)	483, 942
TscAI	CASTG	5 cut(s)	30, 367, 1056, 1411, 1782
TseI	GCWGC	7 cut(s)	148, 151, 154, 374, 1277, 1505, 1508
TspDTI	ATGAA	6 cut(s)	741, 1489, 1575, 1687, 2022, 2142
TspGWI	ACGGA	1 cut(s)	49
TspRI	CASTG	5 cut(s)	30, 367, 1056, 1411, 1782
Tth111I	GACNNNGTC	1 cut(s)	1228
Van91I	CCANNNNNTGG	2 cut(s)	683, 865
VpaK11BI	GGWCC	3 cut(s)	346, 1574, 2072
XagI	CCTNNNNNAGG	2 cut(s)	667, 2082
XapI	RAATTY	6 cut(s)	165, 709, 1109, 1333, 1400, 1634
XceI	RCATGY	2 cut(s)	439, 1199
XmiI	GTMKAC	2 cut(s)	137, 1528
XmnI	GAANNNNTTC	2 cut(s)	930, 2050
XspI	CTAG	4 cut(s)	141, 788, 1259, 1704
Zsp2I	ATGCAT	1 cut(s)	1912

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.