Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006884

Physical Location & Seq

Genomic Coordinates Reverse (-)

14232496 .. 14238410

Gene Structure 5915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011973

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2805 bp

ATGGTGGGGAGGAGGAGGAAGCCACTGGTACTCACTTCCACCAAAACTCTCATCAAATCCGTACTCACTTCGCCGCTGGCAGCACTCACTTCCGACGACGATCACCGACTCTCCGCCGCCGCCGCTGATGACGACGTGTCTACTAGTTTGCAGCTGCTGCCGCCGGGAATTCTCCGGTTCTCCATCGGTCGGAGCCCCAAATTGGCTTCTCTCGACGACTCTGCTCTCGTTGGGCTCTCCACTGCTCTCCTCAAACGCCTCTGCATCACCTCCGGCTCCCTGGTGCTTGTGAAGAATATGGAGACAAAAATAGAAAGAATTGCTCAGGCCATTGTTGTGGATCCTCCGGACCGCTCCGAGAACACTGGACTATCTGCTGCCCAATCTTCCCAGGCAATGCTTATTCTGCCTTGTTGCACTTTCCCTGAAAATGGCCACATGTTGTTAGACTGGGAAGTTGCCTATATATCACCTCTGTTGGCATTTAACATTGACTTGCATACATTGTGCTTGAAATCGCTTGTCCATAGAGGGGAAGCGGCGTTGGCATCTTATTTCGGGGATAGAGTGGACGAAGAGGTGAGTGGGAAAGGCGTTGGGGCTTCTGTGATTGGAATACAACCTCAGTCGGAGTTGCCAAGATATGCTTCGCACTTGAGGGCTTCCTTTGTGAGGATACCAGAATGTGGTAGTCTTGACGCTCTTAGAGGAAATTCGGCTGTTGAACATGAAGATCGTCAAGAAATGATAGATTTGGCACTACATAGCTACTTTGAAGTTGATAGGTATCTAGCAAGAGGTGATGTTTTCAGTATTTGTATAAAATGGAATTGCAAGTCAACGATTTGCGTTCCTTGCAACCAAAGTTTGGAAAATGGGGTTGATAACACTATCTATTTCAAGGTTGTGGCTATGGAACCTTTGGACAAACCAATTCTCCGAGTTAACCGTTCTCAAACTGCCCTTGTGCTTGGAGGAAGTGTCTCTTCTGCTGTGCCCCCTGATTTATTGATTTCTGGACAAAAAGGTTTCACACCCTTGCAAGGGGACACAGTGAAAATATTGGCTTCCATACTTACACCTCTTCTGTGCCCCTCAGCACTATCCTCAAAATTCAGAGTTTCTGTTTTGTTGTATGGATTGGCAGGATGTGGGAAGAGAACAGTTGTTAGATACATTGCTCGTCGATTGGGCCTGCATGTAGTTGAATATAGCTGTCATAATCTGACCACATCATCTGAAAAAAAGATGTCTGTTGCACTAGCCCAAACCTTGAATGCAGCTCAAAGATACTCGCCAACTATACTTCTTCTCCGCCATTTTGATGTTTTCCGGAATTTGCACGAAGGTTCACCAAATGATCAAGTTGGCATCACTTCTGAAGTTGCATCACTTATAAGGGAATTCACTGAGCCAATCTCTGATTATGGAGACATTGATTCTGAACAAAAACAAAATGGTCACGTTGATTCTGGGAAGACAGGTAGGCATCAAGTGCTGTTCATTGCAGCTGCTGACAGTTCAGAAGGTCTACCGCCAACTATTAGACGTTGCTTTAGCCATGAAATAAGTGTGGGTCCTTTGACTGAAGAACAAAGGGTTAGAATGGTCTCACAGTCTTTGCAGAAGGCTTCTGAATTCCTTTCTAATACTAATTCGGAAGATCTTATAAAGGATATAGTTGCGCAGACATCTGGTTTTATGCCTAGAGATATCTGTGCATTGGTTGCTGATGCTGGTGCAAACTTGATTCCCAAAGGCAATGCTCAGATTGATACAGTGAAGTCTGAAGAATCAGATGCTTCTCTCACAAATAATGTTGAATCAGACAGTAAGTCCTCTGAAGTTGCATCTCCGATTCTGGGGAAAGAAAGCTTGACAAAAGCATTGGAAAGATCAAAGAAAAGGAATGCATCAGCCCTCGGTACTCCAAAGGTTCCTAATGTGAAATGGGAAGATGTTGGTGGTCTTGAGGATGTGAAGAAATCAATCCTGGATACCGTTCAGTTACCTCTTCTGCACAAGGACTTGTTTTCATCTGGCTTACGAAAGCGTTCTGGTGTTCTTCTGTATGGTCCTCCTGGAACAGGGAAAACTCTACTGGCAAAAGCTGTTGCAACTGAGTGCTCCCTGAATTTTCTCAGTGTTAAAGGACCTGAACTAATTAATATGTACATAGGAGAGTCAGAAAAGAATATCAGAGACATTTTCCAGAAGGCCAGATCAGCACGCCCATGTGTTATATTTTTTGATGAACTTGATTCTCTTGCTCCAGCCCGAGGTGCATCTGGGGATTCTGGGGGTGTTATGGACAGAGTGGTTTCTCAGATGCTTGCAGAGATTGATGGCCTAAATGATTCGAGTCAGGACTTGTTTATAATTGGAGCAAGTAACAGACCGGATCTAATTGACCCAGCACTTCTACGACCTGGCCGATTTGATAAGCTGCTTTACGTCGGAGTTGTCTCTGATCCATCTTACAGAGAACGGGTTCTCAAAGCTCTTACCCGAAAGTTTAAGTTACATCAAGATGTTTCACTTTATGCAATAGCGAAGAAATGTCCCCCAACCTTCACTGGTGCAGACATGTATGCCTTGTGTGCAGATGCTTGGTTTAGCGCAGCTAAGCGTAAGGTTTTGAGTTCAGGCTCAGAATCTTCTTCCATGGACGACCAACCTGACTCTGTTGTTGTCGAGTATGATGATTTTTTCAAGGTCTTAAGGGAGCTATCTCCCTCGCTCTCTACGGCCGAGCTTAGGAAGTATGAGATGCTGCGAGATCAGTTTGAAGGATCTTCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042886 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

AAA

Protein Analysis

935

Amino Acids

101.54

Weight (kDa)

6.3

Isoelectric Point (pI)

44.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	376 - 525	2.8e-13	ATPase family associated with various cellular activities (AAA)
AAA	PF00004	688 - 820	4.2e-46	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0006884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03000
fragaria_vesca	FvH4_2g25060 FvH4_2g25060 FvH4_2g25060 FvH4_2g25060 FvH4_2g25060 FvH4_2g25060 FvH4_2g25060
malus_domestica	MD11G1301700.v1.1
prunus_persica	Prupe.8G255300_v2.0.a1 Prupe.8G255300_v2.0.a1 Prupe.8G255300_v2.0.a1
pyrus_communis	pycom11g26430
rosa_chinensis	RchiOBHm_Chr6g0293081
rosa_laevigata	RLG00000011973
rosa_multiflora	Rmu_co8222790.1_g000001 Rmu_sc0003615.1_g000004 Rmu_sc0033483.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174440
rosa_rugosa	Rorug06G0232600.1 Rorug06G0232700
rosa_samantha	Rh6AG345400 Rh6BG352900 Rh6CG359400 Rh6DG345400
rosa_wichuraiana	Rw6G030100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1397, 1670, 2378
Acc16I	TGCGCA	1 cut(s)	1686
AccB7I	CCANNNNNTGG	2 cut(s)	686, 868
AccBSI	CCGCTC	1 cut(s)	354
AccI	GTMKAC	2 cut(s)	140, 1531
AccIII	TCCGGA	2 cut(s)	346, 1332
AclWI	GGATC	5 cut(s)	335, 348, 2409, 2465, 2800
AcoI	YGGCCR	3 cut(s)	433, 2431, 2748
AcsI	RAATTY	7 cut(s)	168, 712, 1112, 1336, 1403, 1637, 2134
AcuI	CTGAAG	4 cut(s)	1401, 1608, 1809, 1863
AfaI	GTAC	4 cut(s)	30, 63, 1927, 2174
AflII	CTTAAG	1 cut(s)	2719
AflIII	ACRYGT	3 cut(s)	135, 438, 2586
AgsI	TTSAA	9 cut(s)	514, 725, 776, 901, 1208, 1276, 1823, 2713, 2789
AhdI	GACNNNNNGTC	2 cut(s)	136, 1834
AhlI	ACTAGT	1 cut(s)	143
AjiI	CACGTC	1 cut(s)	136
AjnI	CCWGG	5 cut(s)	279, 390, 1992, 2080, 2428
AjuI	GAANNNNNNNTTGG	2 cut(s)	631, 663
Alw21I	GWGCWC	1 cut(s)	2129
Alw26I	GTCTC	6 cut(s)	296, 988, 1425, 1615, 2196, 2470
AlwI	GGATC	5 cut(s)	335, 348, 2409, 2465, 2800
AlwNI	CAGNNNCTG	2 cut(s)	157, 1514
Ama87I	CYCGRG	1 cut(s)	2277
Aor13HI	TCCGGA	2 cut(s)	346, 1332
AoxI	GGCC	7 cut(s)	327, 433, 1192, 2217, 2347, 2431, 2748
ApoI	RAATTY	7 cut(s)	168, 712, 1112, 1336, 1403, 1637, 2134
AseI	ATTAAT	1 cut(s)	2166
Asp700I	GAANNNNTTC	2 cut(s)	2053, 2490
AspLEI	GCGC	2 cut(s)	1687, 2621
AspS9I	GGNCC	5 cut(s)	349, 1192, 1577, 2075, 2153
AsuC2I	CCSGG	1 cut(s)	165
AsuHPI	GGTGA	6 cut(s)	95, 259, 462, 592, 812, 1344
AvaI	CYCGRG	1 cut(s)	2277
AvaII	GGWCC	4 cut(s)	349, 1577, 2075, 2153
BaeGI	GKGCMC	2 cut(s)	999, 1094
BalI	TGGCCA	1 cut(s)	435
BamHI	GGATCC	1 cut(s)	340
BanII	GRGCYC	2 cut(s)	197, 237
BbsI	GAAGAC	1 cut(s)	1484
Bbv12I	GWGCWC	1 cut(s)	2129
BbvCI	CCTCAGC	1 cut(s)	1096
BccI	CCATC	3 cut(s)	191, 2339, 2482
BceAI	ACGGC	1 cut(s)	2763
BcgI	CGANNNNNNTGC	2 cut(s)	203, 237
BciT130I	CCWGG	5 cut(s)	281, 392, 1994, 2082, 2430
BciVI	GTATCC	2 cut(s)	669, 1990
BclI	TGATCA	1 cut(s)	1360
BcnI	CCSGG	1 cut(s)	165
BcoDI	GTCTC	6 cut(s)	296, 988, 1425, 1615, 2196, 2470
BcuI	ACTAGT	1 cut(s)	143
BfaI	CTAG	4 cut(s)	144, 791, 1262, 1707
BfrI	CTTAAG	1 cut(s)	2719
BfuI	GTATCC	2 cut(s)	669, 1990
BglII	AGATCT	1 cut(s)	1663
BlpI	GCTNAGC	1 cut(s)	2625
Bme1390I	CCNGG	6 cut(s)	165, 281, 392, 1994, 2082, 2430
Bme18I	GGWCC	4 cut(s)	349, 1577, 2075, 2153
BmeRI	GACNNNNNGTC	2 cut(s)	136, 1834
BmeT110I	CYCGRG	1 cut(s)	2277
BmgBI	CACGTC	1 cut(s)	136
BmgT120I	GGNCC	5 cut(s)	349, 1192, 1577, 2075, 2153
BmiI	GGNNCC	6 cut(s)	194, 277, 342, 918, 1578, 1938
BmrFI	CCNGG	6 cut(s)	165, 281, 392, 1994, 2082, 2430
BmrI	ACTGGG	1 cut(s)	460
BmuI	ACTGGG	1 cut(s)	460
BpiI	GAAGAC	1 cut(s)	1484
BplI	GAGNNNNNCTC	2 cut(s)	1403, 1435
BpmI	CTGGAG	1 cut(s)	2256
Bpu10I	CCTNAGC	3 cut(s)	324, 1096, 2756
Bpu1102I	GCTNAGC	1 cut(s)	2625
BpuEI	CTTGAG	2 cut(s)	676, 1991
BpuMI	CCSGG	1 cut(s)	165
BsaBI	GATNNNNATC	1 cut(s)	786
BsaI	GGTCTC	1 cut(s)	1615
BsaJI	CCNNGG	5 cut(s)	279, 390, 1921, 2278, 2664
BsaWI	WCCGGW	4 cut(s)	174, 346, 1332, 2398
BsaXI	ACNNNNNCTCC	8 cut(s)	95, 125, 921, 951, 966, 996, 1296, 1326
Bse1I	ACTGG	5 cut(s)	30, 370, 455, 2106, 2581
Bse3DI	GCAATG	4 cut(s)	402, 1176, 1503, 1768
Bse8I	GATNNNNATC	1 cut(s)	786
BseAI	TCCGGA	2 cut(s)	346, 1332
BseBI	CCWGG	5 cut(s)	281, 392, 1994, 2082, 2430
BseDI	CCNNGG	5 cut(s)	279, 390, 1921, 2278, 2664
BseGI	GGATG	2 cut(s)	1154, 1981
BseJI	GATNNNNATC	1 cut(s)	786
BseMI	GCAATG	4 cut(s)	402, 1176, 1503, 1768
BseMII	CTCAG	9 cut(s)	338, 638, 1110, 1401, 1781, 2112, 2155, 2339, 2664
BseNI	ACTGG	5 cut(s)	30, 370, 455, 2106, 2581
BseRI	GAGGAG	3 cut(s)	25, 28, 239
BseSI	GKGCMC	2 cut(s)	999, 1094
BseX3I	CGGCCG	1 cut(s)	2748
BseYI	CCCAGC	1 cut(s)	2413
BsgI	GTGCAG	3 cut(s)	2003, 2601, 2622
Bsh1285I	CGRYCG	2 cut(s)	190, 2751
BshFI	GGCC	7 cut(s)	329, 435, 1194, 2219, 2349, 2433, 2750
BsiEI	CGRYCG	2 cut(s)	190, 2751
BsiHKAI	GWGCWC	1 cut(s)	2129
BsiHKCI	CYCGRG	1 cut(s)	2277
BsiSI	CCGG	6 cut(s)	164, 175, 273, 347, 1333, 2399
BslFI	GGGAC	2 cut(s)	1061, 2547
BsmAI	GTCTC	6 cut(s)	296, 988, 1425, 1615, 2196, 2470
BsmFI	GGGAC	2 cut(s)	1061, 2547
BsmI	GAATGC	2 cut(s)	1282, 1915
BsnI	GGCC	7 cut(s)	329, 435, 1194, 2219, 2349, 2433, 2750
Bso31I	GGTCTC	1 cut(s)	1615
BsoBI	CYCGRG	1 cut(s)	2277
Bsp1286I	GDGCHC	5 cut(s)	197, 237, 999, 1094, 2129
Bsp13I	TCCGGA	2 cut(s)	346, 1332
Bsp1407I	TGTACA	1 cut(s)	2172
Bsp1720I	GCTNAGC	1 cut(s)	2625
Bsp19I	CCATGG	1 cut(s)	2664
BspANI	GGCC	7 cut(s)	329, 435, 1194, 2219, 2349, 2433, 2750
BspCNI	CTCAG	9 cut(s)	337, 637, 1109, 1402, 1780, 2113, 2154, 2338, 2663
BspEI	TCCGGA	2 cut(s)	346, 1332
BspLI	GGNNCC	6 cut(s)	194, 277, 342, 918, 1578, 1938
BspPI	GGATC	5 cut(s)	335, 348, 2409, 2465, 2800
BspTI	CTTAAG	1 cut(s)	2719
BspTNI	GGTCTC	1 cut(s)	1615
BsrBI	CCGCTC	1 cut(s)	354
BsrDI	GCAATG	4 cut(s)	402, 1176, 1503, 1768
BsrGI	TGTACA	1 cut(s)	2172
BsrI	ACTGG	5 cut(s)	30, 370, 455, 2106, 2581
BssECI	CCNNGG	5 cut(s)	279, 390, 1921, 2278, 2664
BssT1I	CCWWGG	1 cut(s)	2664
Bst2UI	CCWGG	5 cut(s)	281, 392, 1994, 2082, 2430
Bst4CI	ACNGT	8 cut(s)	950, 1054, 1165, 1520, 1617, 1780, 1832, 2002
Bst6I	CTCTTC	5 cut(s)	570, 991, 1089, 1151, 2019
BstAFI	CTTAAG	1 cut(s)	2719
BstAPI	GCANNNNNTGC	3 cut(s)	157, 1495, 1727
BstAUI	TGTACA	1 cut(s)	2172
BstC8I	GCNNGC	4 cut(s)	78, 1196, 2230, 2334
BstDSI	CCRYGG	1 cut(s)	2664
BstENI	CCTNNNNNAGG	2 cut(s)	670, 2085
BstF5I	GGATG	2 cut(s)	1154, 1981
BstHHI	GCGC	2 cut(s)	1687, 2621
BstMAI	GTCTC	6 cut(s)	296, 988, 1425, 1615, 2196, 2470
BstMCI	CGRYCG	2 cut(s)	190, 2751
BstNI	CCWGG	5 cut(s)	281, 392, 1994, 2082, 2430
BstNSI	RCATGY	3 cut(s)	442, 1202, 2590
BstSCI	CCNGG	6 cut(s)	163, 279, 390, 1992, 2080, 2428
BstSLI	GKGCMC	2 cut(s)	999, 1094
BstV2I	GAAGAC	1 cut(s)	1484
BstX2I	RGATCY	4 cut(s)	340, 1663, 2401, 2792
BstXI	CCANNNNNNTGG	1 cut(s)	337
BstYI	RGATCY	4 cut(s)	340, 1663, 2401, 2792
BstZI	CGGCCG	1 cut(s)	2748
BsuI	GTATCC	2 cut(s)	669, 1990
BsuRI	GGCC	7 cut(s)	329, 435, 1194, 2219, 2349, 2433, 2750
BtgI	CCRYGG	1 cut(s)	2664
BtrI	CACGTC	1 cut(s)	136
BtsCI	GGATG	2 cut(s)	1154, 1981
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	8 cut(s)	23, 240, 363, 1059, 1407, 1785, 2149, 2574
Cac8I	GCNNGC	4 cut(s)	78, 1196, 2230, 2334
CaiI	CAGNNNCTG	2 cut(s)	157, 1514
CfoI	GCGC	2 cut(s)	1687, 2621
Cfr13I	GGNCC	5 cut(s)	349, 1192, 1577, 2075, 2153
CpoI	CGGWCCG	1 cut(s)	349
CseI	GACGC	1 cut(s)	707
Csp6I	GTAC	4 cut(s)	29, 62, 1926, 2173
CspI	CGGWCCG	1 cut(s)	349
CviAII	CATG	7 cut(s)	439, 728, 1199, 1562, 2235, 2587, 2665
CviQI	GTAC	4 cut(s)	29, 62, 1926, 2173
DriI	GACNNNNNGTC	2 cut(s)	136, 1834
EaeI	YGGCCR	3 cut(s)	433, 2431, 2748
EagI	CGGCCG	1 cut(s)	2748
Eam1104I	CTCTTC	5 cut(s)	570, 991, 1089, 1151, 2019
Eam1105I	GACNNNNNGTC	2 cut(s)	136, 1834
EarI	CTCTTC	5 cut(s)	570, 991, 1089, 1151, 2019
EciI	GGCGGA	2 cut(s)	103, 1304
EclXI	CGGCCG	1 cut(s)	2748
Eco130I	CCWWGG	1 cut(s)	2664
Eco24I	GRGCYC	2 cut(s)	197, 237
Eco31I	GGTCTC	1 cut(s)	1615
Eco32I	GATATC	1 cut(s)	1714
Eco47I	GGWCC	4 cut(s)	349, 1577, 2075, 2153
Eco52I	CGGCCG	1 cut(s)	2748
Eco57I	CTGAAG	4 cut(s)	1401, 1608, 1809, 1863
Eco88I	CYCGRG	1 cut(s)	2277
EcoNI	CCTNNNNNAGG	2 cut(s)	670, 2085
EcoO109I	RGGNCCY	2 cut(s)	1577, 2153
EcoRI	GAATTC	3 cut(s)	168, 1403, 1637
EcoRII	CCWGG	5 cut(s)	279, 390, 1992, 2080, 2428
EcoRV	GATATC	1 cut(s)	1714
EcoT14I	CCWWGG	1 cut(s)	2664
EcoT22I	ATGCAT	1 cut(s)	1915
EcoT38I	GRGCYC	2 cut(s)	197, 237
ErhI	CCWWGG	1 cut(s)	2664
FaeI	CATG	7 cut(s)	442, 731, 1202, 1565, 2238, 2590, 2668
FalI	AAGNNNNNCTT	4 cut(s)	631, 663, 970, 1002
FaqI	GGGAC	2 cut(s)	1061, 2547
FatI	CATG	7 cut(s)	438, 727, 1198, 1561, 2234, 2586, 2664
FbaI	TGATCA	1 cut(s)	1360
FblI	GTMKAC	2 cut(s)	140, 1531
FokI	GGATG	2 cut(s)	1161, 1988
FriOI	GRGCYC	2 cut(s)	197, 237
FspBI	CTAG	4 cut(s)	144, 791, 1262, 1707
FspI	TGCGCA	1 cut(s)	1686
GlaI	GCGC	2 cut(s)	1686, 2620
GsaI	CCCAGC	1 cut(s)	2417
GsuI	CTGGAG	1 cut(s)	2256
HaeIII	GGCC	7 cut(s)	329, 435, 1194, 2219, 2349, 2433, 2750
HapII	CCGG	6 cut(s)	164, 175, 273, 347, 1333, 2399
HgaI	GACGC	1 cut(s)	707
HhaI	GCGC	2 cut(s)	1687, 2621
Hin1II	CATG	7 cut(s)	442, 731, 1202, 1565, 2238, 2590, 2668
Hin6I	GCGC	2 cut(s)	1685, 2619
HinP1I	GCGC	2 cut(s)	1685, 2619
HincII	GTYRAC	2 cut(s)	840, 946
HindII	GTYRAC	2 cut(s)	840, 946
HindIII	AAGCTT	1 cut(s)	1873
HpaI	GTTAAC	1 cut(s)	946
HpaII	CCGG	6 cut(s)	164, 175, 273, 347, 1333, 2399
HphI	GGTGA	6 cut(s)	95, 259, 462, 592, 812, 1344
Hpy166II	GTNNAC	6 cut(s)	141, 571, 840, 946, 1352, 1532
Hpy8I	GTNNAC	6 cut(s)	141, 571, 840, 946, 1352, 1532
Hpy99I	CGWCG	6 cut(s)	98, 101, 137, 218, 1188, 2459
HpyAV	CCTTC	6 cut(s)	1340, 1520, 1621, 2209, 2581, 2783
HpyCH4III	ACNGT	8 cut(s)	950, 1054, 1165, 1520, 1617, 1780, 1832, 2002
HpyCH4IV	ACGT	4 cut(s)	135, 1464, 1549, 2454
HpySE526I	ACGT	4 cut(s)	135, 1464, 1549, 2454
Hsp92II	CATG	7 cut(s)	442, 731, 1202, 1565, 2238, 2590, 2668
HspAI	GCGC	2 cut(s)	1685, 2619
Kpn2I	TCCGGA	2 cut(s)	346, 1332
Ksp22I	TGATCA	1 cut(s)	1360
KspAI	GTTAAC	1 cut(s)	946
LmnI	GCTCC	7 cut(s)	192, 281, 359, 2132, 2275, 2384, 2725
MaeI	CTAG	4 cut(s)	144, 791, 1262, 1707
MaeII	ACGT	4 cut(s)	135, 1464, 1549, 2454
MaeIII	GTNAC	4 cut(s)	1460, 2007, 2390, 2520
MbiI	CCGCTC	1 cut(s)	354
MflI	RGATCY	4 cut(s)	340, 1663, 2401, 2792
MhlI	GDGCHC	5 cut(s)	197, 237, 999, 1094, 2129
MlsI	TGGCCA	1 cut(s)	435
MluNI	TGGCCA	1 cut(s)	435
MlyI	GAGTC	5 cut(s)	102, 212, 2192, 2371, 2675
MmeI	TCCRAC	4 cut(s)	117, 170, 609, 2437
Mox20I	TGGCCA	1 cut(s)	435
Mph1103I	ATGCAT	1 cut(s)	1915
MroI	TCCGGA	2 cut(s)	346, 1332
MroXI	GAANNNNTTC	2 cut(s)	2053, 2490
MscI	TGGCCA	1 cut(s)	435
MseI	TTAA	6 cut(s)	486, 945, 2148, 2166, 2517, 2720
MslI	CAYNNNNRTG	4 cut(s)	335, 1323, 2233, 2529
Msp20I	TGGCCA	1 cut(s)	435
MspA1I	CMGCKG	4 cut(s)	76, 125, 154, 1511
MspCI	CTTAAG	1 cut(s)	2719
MspI	CCGG	6 cut(s)	164, 175, 273, 347, 1333, 2399
MspR9I	CCNGG	6 cut(s)	165, 281, 392, 1994, 2082, 2430
Mva1269I	GAATGC	2 cut(s)	1282, 1915
MvaI	CCWGG	5 cut(s)	281, 392, 1994, 2082, 2430
NciI	CCSGG	1 cut(s)	165
NcoI	CCATGG	1 cut(s)	2664
NlaIII	CATG	7 cut(s)	442, 731, 1202, 1565, 2238, 2590, 2668
NlaIV	GGNNCC	6 cut(s)	194, 277, 342, 918, 1578, 1938
NmeAIII	GCCGAG	1 cut(s)	2776
NmuCI	GTSAC	1 cut(s)	1460
NsbI	TGCGCA	1 cut(s)	1686
NsiI	ATGCAT	1 cut(s)	1915
NspI	RCATGY	3 cut(s)	442, 1202, 2590
PciI	ACATGT	2 cut(s)	438, 2586
PcsI	WCGNNNNNNNCGW	1 cut(s)	2431
PctI	GAATGC	2 cut(s)	1282, 1915
PdmI	GAANNNNTTC	2 cut(s)	2053, 2490
PflMI	CCANNNNNTGG	2 cut(s)	686, 868
PfoI	TCCNGGA	2 cut(s)	1992, 2080
PleI	GAGTC	5 cut(s)	102, 212, 2191, 2370, 2675
PpsI	GAGTC	5 cut(s)	102, 212, 2191, 2370, 2675
PpuMI	RGGWCCY	2 cut(s)	1577, 2153
PscI	ACATGT	2 cut(s)	438, 2586
PshBI	ATTAAT	1 cut(s)	2166
PsiI	TTATAA	3 cut(s)	1397, 1670, 2378
Psp5II	RGGWCCY	2 cut(s)	1577, 2153
Psp6I	CCWGG	5 cut(s)	279, 390, 1992, 2080, 2428
PspFI	CCCAGC	1 cut(s)	2413
PspGI	CCWGG	5 cut(s)	279, 390, 1992, 2080, 2428
PspN4I	GGNNCC	6 cut(s)	194, 277, 342, 918, 1578, 1938
PspPI	GGNCC	5 cut(s)	349, 1192, 1577, 2075, 2153
PspPPI	RGGWCCY	2 cut(s)	1577, 2153
PstNI	CAGNNNCTG	2 cut(s)	157, 1514
PsuI	RGATCY	4 cut(s)	340, 1663, 2401, 2792
PvuII	CAGCTG	2 cut(s)	154, 1511
RsaI	GTAC	4 cut(s)	30, 63, 1927, 2174
RsaNI	GTAC	4 cut(s)	29, 62, 1926, 2173
RseI	CAYNNNNRTG	4 cut(s)	335, 1323, 2233, 2529
Rsr2I	CGGWCCG	1 cut(s)	349
RsrII	CGGWCCG	1 cut(s)	349
SaqAI	TTAA	6 cut(s)	486, 945, 2148, 2166, 2517, 2720
Sau96I	GGNCC	5 cut(s)	349, 1192, 1577, 2075, 2153
SchI	GAGTC	5 cut(s)	102, 212, 2192, 2371, 2675
ScrFI	CCNGG	6 cut(s)	165, 281, 392, 1994, 2082, 2430
SduI	GDGCHC	5 cut(s)	197, 237, 999, 1094, 2129
SinI	GGWCC	4 cut(s)	349, 1577, 2075, 2153
SmiMI	CAYNNNNRTG	4 cut(s)	335, 1323, 2233, 2529
SmlI	CTYRAG	3 cut(s)	655, 1970, 2719
SmoI	CTYRAG	3 cut(s)	655, 1970, 2719
SpeI	ACTAGT	1 cut(s)	143
SspI	AATATT	1 cut(s)	1062
SspMI	CTAG	4 cut(s)	144, 791, 1262, 1707
StyD4I	CCNGG	6 cut(s)	163, 279, 390, 1992, 2080, 2428
StyI	CCWWGG	1 cut(s)	2664
TaaI	ACNGT	8 cut(s)	950, 1054, 1165, 1520, 1617, 1780, 1832, 2002
TaiI	ACGT	4 cut(s)	138, 1467, 1552, 2457
TaqI	TCGA	4 cut(s)	213, 1186, 2360, 2694
TaqII	GACCGA	1 cut(s)	176
TatI	WGTACW	1 cut(s)	2172
TauI	GCSGC	6 cut(s)	76, 119, 122, 125, 163, 542
Tru1I	TTAA	6 cut(s)	486, 945, 2148, 2166, 2517, 2720
Tru9I	TTAA	6 cut(s)	486, 945, 2148, 2166, 2517, 2720
TscAI	CASTG	8 cut(s)	30, 247, 370, 1059, 1414, 1785, 2149, 2581
TseFI	GTSAC	1 cut(s)	1460
Tsp45I	GTSAC	1 cut(s)	1460
TspDTI	ATGAA	5 cut(s)	744, 1492, 1578, 2025, 2268
TspGWI	ACGGA	1 cut(s)	49
TspRI	CASTG	8 cut(s)	30, 247, 370, 1059, 1414, 1785, 2149, 2581
Van91I	CCANNNNNTGG	2 cut(s)	686, 868
Vha464I	CTTAAG	1 cut(s)	2719
VpaK11BI	GGWCC	4 cut(s)	349, 1577, 2075, 2153
VspI	ATTAAT	1 cut(s)	2166
XagI	CCTNNNNNAGG	2 cut(s)	670, 2085
XapI	RAATTY	7 cut(s)	168, 712, 1112, 1336, 1403, 1637, 2134
XceI	RCATGY	3 cut(s)	442, 1202, 2590
XmiI	GTMKAC	2 cut(s)	140, 1531
XmnI	GAANNNNTTC	2 cut(s)	2053, 2490
XspI	CTAG	4 cut(s)	144, 791, 1262, 1707
Zsp2I	ATGCAT	1 cut(s)	1915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.