Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006884

Physical Location & Seq

Genomic Coordinates Reverse (-)

14112563 .. 14119595

Gene Structure 7033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00174440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2802 bp

ATGGTCGGGAGGAGGAGGAAGCCACTGGTACTCACTTCCACCAAAACTCTCATCAAATCCGTACTGACTTCGCCGCCGGGAGAACTCACTTCCGACGACGATCACCGACTCTCCGCCGTCGCCGCCGATGACGTGTCTACTAGTTTGCAGCTGCTGTCGCCTGGAATTCTCCGGTTCTCCATCGGTCGGAGCCCAAAATTGGCTTCTCTCGACGACTCTGCTCTCGTTGGGCTCTCCACTGCTCTCCTCAAACGCCTCTGCATCACCTCCGGCTCCCTGGTGCTTGTGAAGAATATGGAGACAAAAATAGAAAGAATTGCTCAGGCCGTTGTTGTGGATCCGCCGGACCGCTCCGAGAACACTGGACTATCTGCTGCCCAATCTTCCCAGGCAGTGCTTATTCTGCCTTGTTGCACGTTCCCTGAAAATGGCCACATGTTGTTAGACCCGGAAGTTGCCTATATATCACCTCTTTTGGCATTTAACATTGACTTGCATACATTGTGCTTGAAATCGCTTGTCCATAGAGGGGAAGCGGTGTTGGCATCTTATTTCGGGGATAGAGTGGACGAAGAGGTGAGTGGGAAAGGCGTCGGGGCTTCTGTGATTGGAATACAACCTCAGTCGGAGTTGCCAAGATATGCTTCGCACTTGAGGGCTTCCTTTGTGAGGATACCAGAATGTGGTAGTCTTGACTCTCTTAGAGGAAATTCGGCTGTTGAACATGAAGATCGTCAAGAAATGATAGATTTGGCACTACATAGCTACTTTGAAGTTGATAGGTATCTAGCAAGAGGTGATGTTTTCAGTATTTGTATAAAATGGAATTGCAAGTCAACGATTTGCGTACCTTGCAACCAATGTTTGGAAAATGGGGTTGATAACACTATCTATTTCAAGGTTGTGGCTATGGAACCTTTGGACGAACCAATTCTCCGAGTTAACCGTTCTCAAACTGCCCTTGTGCTTGGAGGAAGTGTCTCTTCTGCTGTGCCCCCTGATTTATTGATTTCTGGACAAAAAGGTTTCACACCCTTGCAAGGGGACACAGTGAAAATATTGGCCTCCATACTTACACCTCTTCTGTGCCCCTCAGCACTATCTTCAAAATTCAGAGTTTCTGTTCTGTTGTATGGATTGGCAGGATGTGGGAAGAGAACAGTTGTTAGATACATTGCTCGTCGATTGGGCCTGCATGTAGTTGAATATAGCTGTCATAATCTGACGACATCATCTGAAAAAAAGATGTCTGTTGCACTAGCCCAAACCTTGAATGCAGCTCAAAGATACTCGCCAACTATACTTCTTCTCCGCCATTTTGATGTTTTCCGGAATTTGCACGAAGGTTCACCAAATGATCAAGTTGGCATCACTTCTGAAGTTGCATCACTTATAAGGGAATTCACTGAGCCAATCTCTGATTATGGAGACATTGATTCTGAACAAAAACAAAATGGTCATGTTGATTCTGGGAAGATAGGTAGGCATCAAGTGCTGTTCATTGCAGCTGCTGACAGTTCAGAAGGTCTACCGCCAACTATTAGACGTTGCTTTAGCCATGAAATAAGTATGGGTCCTTTGACTGAAGAACAAAGGGTTAGAATGGTCTCACAGTCTTTGCAGAAGGCTTCTGAATTCCTTTCTAACACTAATTCGGAGGATCTTATAAAGGATATAGTTGCGCAGACATCTGGTTTCATGCCTAGAGATATCTGTGCATTGGTTGCTGATGCTGGTGCAAACTTGATTCCCAAAGGCAATGCTCAGATTGATACAGTGAAGTCTGAAGAATCAGATGCTTCTCTCACAAATAATGTTGAATCAGACAGTAAGTCCTCTGAAGTTGCATCTCCGATTCTGGGGAAAGAAAGCTTGACGAAAGCATTGGAAAGATCAAAGAAAAGGAATGCATCAGCCCTCGGTACTCCAAAGGTTCCTAATGTGAAATGGGAAGATGTTGGTGGTCTTGAGGATGTGAAGAAATCAATCCTGGATACTGTTCAGTTACCTCTTCTGCACAAGGACTTGTTTTCATCTGGCTTACGAAAGCGTTCTGGTGTTCTTCTGTATGGTCCTCCTGGAACAGGGAAAACTCTACTGGCAAAAGCTGTTGCAACTGAGTGCTCCCTGAATTTTCTTAGTGTAAAAGGACCTGAACTAATTAATATGTACATAGGAGAGTCAGAAAAGAATATCAGAGACATTTTCCAGAAGGCCAGATCAGCACGCCCATGTGTTATATTTTTTGATGAACTTGATTCTCTTGCTCCAGCACGAGGTGCATCTGGGGATTCTGGGGGTGTTATGGACAGAGTGGTTTCTCAGATGCTTGCAGAGATTGATGGCCTAAATGATTCGAGTCAGGACTTGTTTATAATTGGAGCAAGTAACAGACCAGATCTAATTGACCCAGCACTTCTACGACCTGGCCGATTTGATAAGTTGCTTTACGTTGGAGTTGTCTCTGATCCATCTTACAGAGAACGGGTTCTCAAAGCTCTTACCCGAAAGTTTAAGTTACATCAAGAGGTTTCACTTTATGCAATAGCGAAGAAATGTCCCCCAACCTTCACTGGTGCAGACATGTATGCCTTGTGTGCAGATGCTTGGTTTAGCGCAGCTAAGCGTAAGGTTTTGAGTTCAGGCTCAGAATCTTCTTCCATGGACGACCAACCTGACTCTGTTGTTGTCGAGTATGATGATTTTTTCAAGGTCTTAAGGGAGCTATCTCCCTCGCTCTCTACGGCCGAGCTTAGGAAGTATGAGTTGCTGCGAGATCAGTTTGAAGGATCTTCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042886 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

AAA

Protein Analysis

933

Amino Acids

101.43

Weight (kDa)

6.13

Isoelectric Point (pI)

44.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	375 - 524	3.9e-13	ATPase family associated with various cellular activities (AAA)
AAA	PF00004	687 - 819	4.2e-46	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0006884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03000
fragaria_vesca	FvH4_2g25060 FvH4_2g25060 FvH4_2g25060 FvH4_2g25060 FvH4_2g25060 FvH4_2g25060 FvH4_2g25060
malus_domestica	MD11G1301700.v1.1
prunus_persica	Prupe.8G255300_v2.0.a1 Prupe.8G255300_v2.0.a1 Prupe.8G255300_v2.0.a1
pyrus_communis	pycom11g26430
rosa_chinensis	RchiOBHm_Chr6g0293081
rosa_laevigata	RLG00000011973
rosa_multiflora	Rmu_co8222790.1_g000001 Rmu_sc0003615.1_g000004 Rmu_sc0033483.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174440
rosa_rugosa	Rorug06G0232600.1 Rorug06G0232700
rosa_samantha	Rh6AG345400 Rh6BG352900 Rh6CG359400 Rh6DG345400
rosa_wichuraiana	Rw6G030100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1394, 1667, 2375
Acc16I	TGCGCA	1 cut(s)	1683
AccB7I	CCANNNNNTGG	2 cut(s)	683, 865
AccBSI	CCGCTC	1 cut(s)	351
AccI	GTMKAC	2 cut(s)	137, 1528
AccIII	TCCGGA	1 cut(s)	1329
AciI	CCGC	8 cut(s)	74, 114, 123, 341, 349, 536, 1312, 1532
AclWI	GGATC	5 cut(s)	332, 345, 1668, 2462, 2797
AcoI	YGGCCR	3 cut(s)	430, 2428, 2745
AcsI	RAATTY	7 cut(s)	165, 709, 1109, 1333, 1400, 1634, 2131
AcuI	CTGAAG	4 cut(s)	1398, 1605, 1806, 1860
AcyI	GRCGYC	1 cut(s)	591
AdeI	CACNNNGTG	1 cut(s)	2279
AfaI	GTAC	5 cut(s)	30, 63, 849, 1924, 2171
AflII	CTTAAG	1 cut(s)	2716
AflIII	ACRYGT	3 cut(s)	132, 435, 2583
AhdI	GACNNNNNGTC	1 cut(s)	1831
AhlI	ACTAGT	1 cut(s)	140
AjiI	CACGTC	1 cut(s)	133
AjnI	CCWGG	6 cut(s)	160, 276, 387, 1989, 2077, 2425
AjuI	GAANNNNNNNTTGG	4 cut(s)	187, 219, 628, 660
AloI	GAACNNNNNNTCC	2 cut(s)	918, 950
Alw21I	GWGCWC	1 cut(s)	2126
Alw26I	GTCTC	6 cut(s)	293, 985, 1422, 1612, 2193, 2467
AlwI	GGATC	5 cut(s)	332, 345, 1668, 2462, 2797
AlwNI	CAGNNNCTG	2 cut(s)	154, 1511
Aor13HI	TCCGGA	1 cut(s)	1329
AoxI	GGCC	8 cut(s)	324, 430, 1062, 1189, 2214, 2344, 2428, 2745
ApeKI	GCWGC	8 cut(s)	148, 151, 374, 1277, 1505, 1508, 2618, 2770
ApoI	RAATTY	7 cut(s)	165, 709, 1109, 1333, 1400, 1634, 2131
AseI	ATTAAT	1 cut(s)	2163
Asp700I	GAANNNNTTC	3 cut(s)	930, 2050, 2487
AspLEI	GCGC	2 cut(s)	1684, 2618
AspS9I	GGNCC	5 cut(s)	346, 1189, 1574, 2072, 2150
AsuC2I	CCSGG	2 cut(s)	78, 449
AsuHPI	GGTGA	6 cut(s)	95, 256, 459, 589, 809, 1341
AvaII	GGWCC	4 cut(s)	346, 1574, 2072, 2150
BaeGI	GKGCMC	2 cut(s)	996, 1091
BalI	TGGCCA	1 cut(s)	432
BamHI	GGATCC	1 cut(s)	337
BanII	GRGCYC	2 cut(s)	194, 234
BauI	CACGAG	1 cut(s)	2274
Bbv12I	GWGCWC	1 cut(s)	2126
BbvCI	CCTCAGC	1 cut(s)	1093
BbvI	GCAGC	8 cut(s)	138, 160, 361, 1289, 1495, 1517, 2630, 2757
BccI	CCATC	3 cut(s)	188, 2336, 2479
BceAI	ACGGC	3 cut(s)	101, 311, 2760
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BciT130I	CCWGG	6 cut(s)	162, 278, 389, 1991, 2079, 2427
BciVI	GTATCC	2 cut(s)	666, 1987
BclI	TGATCA	1 cut(s)	1357
BcnI	CCSGG	2 cut(s)	78, 449
BcoDI	GTCTC	6 cut(s)	293, 985, 1422, 1612, 2193, 2467
BcuI	ACTAGT	1 cut(s)	140
BfaI	CTAG	4 cut(s)	141, 788, 1259, 1704
BfrI	CTTAAG	1 cut(s)	2716
BfuI	GTATCC	2 cut(s)	666, 1987
BglII	AGATCT	1 cut(s)	2398
BlpI	GCTNAGC	1 cut(s)	2622
Bme1390I	CCNGG	8 cut(s)	78, 162, 278, 389, 449, 1991, 2079, 2427
Bme18I	GGWCC	4 cut(s)	346, 1574, 2072, 2150
BmeRI	GACNNNNNGTC	1 cut(s)	1831
BmgBI	CACGTC	1 cut(s)	133
BmgT120I	GGNCC	5 cut(s)	346, 1189, 1574, 2072, 2150
BmiI	GGNNCC	6 cut(s)	191, 274, 339, 915, 1575, 1935
BmrFI	CCNGG	8 cut(s)	78, 162, 278, 389, 449, 1991, 2079, 2427
BplI	GAGNNNNNCTC	2 cut(s)	1400, 1432
BpmI	CTGGAG	1 cut(s)	2253
Bpu10I	CCTNAGC	3 cut(s)	321, 1093, 2753
Bpu1102I	GCTNAGC	1 cut(s)	2622
BpuEI	CTTGAG	2 cut(s)	673, 1988
BpuMI	CCSGG	2 cut(s)	78, 449
BsaBI	GATNNNNATC	1 cut(s)	783
BsaHI	GRCGYC	1 cut(s)	591
BsaI	GGTCTC	1 cut(s)	1612
BsaJI	CCNNGG	4 cut(s)	276, 387, 1918, 2661
BsaWI	WCCGGW	2 cut(s)	171, 1329
BsaXI	ACNNNNNCTCC	8 cut(s)	95, 125, 918, 948, 963, 993, 1293, 1323
Bse1I	ACTGG	4 cut(s)	30, 367, 2103, 2578
Bse3DI	GCAATG	3 cut(s)	1173, 1500, 1765
Bse8I	GATNNNNATC	1 cut(s)	783
BseAI	TCCGGA	1 cut(s)	1329
BseBI	CCWGG	6 cut(s)	162, 278, 389, 1991, 2079, 2427
BseDI	CCNNGG	4 cut(s)	276, 387, 1918, 2661
BseGI	GGATG	2 cut(s)	1151, 1978
BseJI	GATNNNNATC	1 cut(s)	783
BseMI	GCAATG	3 cut(s)	1173, 1500, 1765
BseMII	CTCAG	8 cut(s)	335, 635, 1107, 1398, 1778, 2109, 2336, 2661
BseNI	ACTGG	4 cut(s)	30, 367, 2103, 2578
BseRI	GAGGAG	3 cut(s)	25, 28, 236
BseSI	GKGCMC	2 cut(s)	996, 1091
BseX3I	CGGCCG	1 cut(s)	2745
BseXI	GCAGC	8 cut(s)	138, 160, 361, 1289, 1495, 1517, 2630, 2757
BseYI	CCCAGC	1 cut(s)	2410
BsgI	GTGCAG	3 cut(s)	2000, 2598, 2619
Bsh1285I	CGRYCG	2 cut(s)	187, 2748
BshFI	GGCC	8 cut(s)	326, 432, 1064, 1191, 2216, 2346, 2430, 2747
BsiEI	CGRYCG	2 cut(s)	187, 2748
BsiHKAI	GWGCWC	1 cut(s)	2126
BsiSI	CCGG	6 cut(s)	77, 172, 270, 344, 449, 1330
BslFI	GGGAC	2 cut(s)	1058, 2544
BsmAI	GTCTC	6 cut(s)	293, 985, 1422, 1612, 2193, 2467
BsmFI	GGGAC	2 cut(s)	1058, 2544
BsmI	GAATGC	2 cut(s)	1279, 1912
BsnI	GGCC	8 cut(s)	326, 432, 1064, 1191, 2216, 2346, 2430, 2747
Bso31I	GGTCTC	1 cut(s)	1612
Bsp1286I	GDGCHC	5 cut(s)	194, 234, 996, 1091, 2126
Bsp13I	TCCGGA	1 cut(s)	1329
Bsp1407I	TGTACA	1 cut(s)	2169
Bsp1720I	GCTNAGC	1 cut(s)	2622
Bsp19I	CCATGG	1 cut(s)	2661
BspACI	CCGC	8 cut(s)	74, 114, 123, 341, 349, 536, 1312, 1532
BspANI	GGCC	8 cut(s)	326, 432, 1064, 1191, 2216, 2346, 2430, 2747
BspCNI	CTCAG	8 cut(s)	334, 634, 1106, 1399, 1777, 2110, 2335, 2660
BspEI	TCCGGA	1 cut(s)	1329
BspLI	GGNNCC	6 cut(s)	191, 274, 339, 915, 1575, 1935
BspPI	GGATC	5 cut(s)	332, 345, 1668, 2462, 2797
BspTI	CTTAAG	1 cut(s)	2716
BspTNI	GGTCTC	1 cut(s)	1612
BsrBI	CCGCTC	1 cut(s)	351
BsrDI	GCAATG	3 cut(s)	1173, 1500, 1765
BsrGI	TGTACA	1 cut(s)	2169
BsrI	ACTGG	4 cut(s)	30, 367, 2103, 2578
BssECI	CCNNGG	4 cut(s)	276, 387, 1918, 2661
BssNI	GRCGYC	1 cut(s)	591
BssSI	CACGAG	1 cut(s)	2274
BssT1I	CCWWGG	1 cut(s)	2661
Bst2BI	CACGAG	1 cut(s)	2274
Bst2UI	CCWGG	6 cut(s)	162, 278, 389, 1991, 2079, 2427
Bst4CI	ACNGT	8 cut(s)	947, 1051, 1162, 1517, 1614, 1777, 1829, 1999
Bst6I	CTCTTC	5 cut(s)	567, 988, 1086, 1148, 2016
BstACI	GRCGYC	1 cut(s)	591
BstAFI	CTTAAG	1 cut(s)	2716
BstAPI	GCANNNNNTGC	3 cut(s)	1492, 1724, 2279
BstAUI	TGTACA	1 cut(s)	2169
BstC8I	GCNNGC	3 cut(s)	1193, 2227, 2331
BstDSI	CCRYGG	1 cut(s)	2661
BstENI	CCTNNNNNAGG	2 cut(s)	667, 2082
BstF5I	GGATG	2 cut(s)	1151, 1978
BstHHI	GCGC	2 cut(s)	1684, 2618
BstMAI	GTCTC	6 cut(s)	293, 985, 1422, 1612, 2193, 2467
BstMCI	CGRYCG	2 cut(s)	187, 2748
BstNI	CCWGG	6 cut(s)	162, 278, 389, 1991, 2079, 2427
BstNSI	RCATGY	3 cut(s)	439, 1199, 2587
BstSCI	CCNGG	8 cut(s)	76, 160, 276, 387, 447, 1989, 2077, 2425
BstSLI	GKGCMC	2 cut(s)	996, 1091
BstV1I	GCAGC	8 cut(s)	138, 160, 361, 1289, 1495, 1517, 2630, 2757
BstX2I	RGATCY	4 cut(s)	337, 1660, 2398, 2789
BstYI	RGATCY	4 cut(s)	337, 1660, 2398, 2789
BstZI	CGGCCG	1 cut(s)	2745
BsuI	GTATCC	2 cut(s)	666, 1987
BsuRI	GGCC	8 cut(s)	326, 432, 1064, 1191, 2216, 2346, 2430, 2747
BtgI	CCRYGG	1 cut(s)	2661
BtrI	CACGTC	1 cut(s)	133
BtsCI	GGATG	2 cut(s)	1151, 1978
BtsI	GCAGTG	2 cut(s)	237, 399
BtsIMutI	CAGTG	8 cut(s)	23, 237, 360, 399, 1056, 1404, 1782, 2571
Cac8I	GCNNGC	3 cut(s)	1193, 2227, 2331
CaiI	CAGNNNCTG	2 cut(s)	154, 1511
CfoI	GCGC	2 cut(s)	1684, 2618
Cfr13I	GGNCC	5 cut(s)	346, 1189, 1574, 2072, 2150
CpoI	CGGWCCG	1 cut(s)	346
CseI	GACGC	1 cut(s)	580
Csp6I	GTAC	5 cut(s)	29, 62, 848, 1923, 2170
CspI	CGGWCCG	1 cut(s)	346
CviAII	CATG	9 cut(s)	436, 725, 1196, 1460, 1559, 1699, 2232, 2584, 2662
CviQI	GTAC	5 cut(s)	29, 62, 848, 1923, 2170
DraIII	CACNNNGTG	1 cut(s)	2279
DriI	GACNNNNNGTC	1 cut(s)	1831
EaeI	YGGCCR	3 cut(s)	430, 2428, 2745
EagI	CGGCCG	1 cut(s)	2745
Eam1104I	CTCTTC	5 cut(s)	567, 988, 1086, 1148, 2016
Eam1105I	GACNNNNNGTC	1 cut(s)	1831
EarI	CTCTTC	5 cut(s)	567, 988, 1086, 1148, 2016
EciI	GGCGGA	3 cut(s)	103, 330, 1301
EclXI	CGGCCG	1 cut(s)	2745
Eco130I	CCWWGG	1 cut(s)	2661
Eco24I	GRGCYC	2 cut(s)	194, 234
Eco31I	GGTCTC	1 cut(s)	1612
Eco32I	GATATC	1 cut(s)	1711
Eco47I	GGWCC	4 cut(s)	346, 1574, 2072, 2150
Eco52I	CGGCCG	1 cut(s)	2745
Eco57I	CTGAAG	4 cut(s)	1398, 1605, 1806, 1860
EcoNI	CCTNNNNNAGG	2 cut(s)	667, 2082
EcoO109I	RGGNCCY	2 cut(s)	1574, 2150
EcoRI	GAATTC	3 cut(s)	165, 1400, 1634
EcoRII	CCWGG	6 cut(s)	160, 276, 387, 1989, 2077, 2425
EcoRV	GATATC	1 cut(s)	1711
EcoT14I	CCWWGG	1 cut(s)	2661
EcoT22I	ATGCAT	1 cut(s)	1912
EcoT38I	GRGCYC	2 cut(s)	194, 234
ErhI	CCWWGG	1 cut(s)	2661
FaeI	CATG	9 cut(s)	439, 728, 1199, 1463, 1562, 1702, 2235, 2587, 2665
FalI	AAGNNNNNCTT	4 cut(s)	628, 660, 967, 999
FaqI	GGGAC	2 cut(s)	1058, 2544
FatI	CATG	9 cut(s)	435, 724, 1195, 1459, 1558, 1698, 2231, 2583, 2661
FbaI	TGATCA	1 cut(s)	1357
FblI	GTMKAC	2 cut(s)	137, 1528
FokI	GGATG	2 cut(s)	1158, 1985
FriOI	GRGCYC	2 cut(s)	194, 234
FspBI	CTAG	4 cut(s)	141, 788, 1259, 1704
FspI	TGCGCA	1 cut(s)	1683
GlaI	GCGC	2 cut(s)	1683, 2617
GsaI	CCCAGC	1 cut(s)	2414
GsuI	CTGGAG	1 cut(s)	2253
HaeIII	GGCC	8 cut(s)	326, 432, 1064, 1191, 2216, 2346, 2430, 2747
HapII	CCGG	6 cut(s)	77, 172, 270, 344, 449, 1330
HgaI	GACGC	1 cut(s)	580
HhaI	GCGC	2 cut(s)	1684, 2618
Hin1I	GRCGYC	1 cut(s)	591
Hin1II	CATG	9 cut(s)	439, 728, 1199, 1463, 1562, 1702, 2235, 2587, 2665
Hin6I	GCGC	2 cut(s)	1682, 2616
HinP1I	GCGC	2 cut(s)	1682, 2616
HincII	GTYRAC	2 cut(s)	837, 943
HindII	GTYRAC	2 cut(s)	837, 943
HindIII	AAGCTT	1 cut(s)	1870
HpaI	GTTAAC	1 cut(s)	943
HpaII	CCGG	6 cut(s)	77, 172, 270, 344, 449, 1330
HphI	GGTGA	6 cut(s)	95, 256, 459, 589, 809, 1341
Hpy166II	GTNNAC	6 cut(s)	138, 568, 837, 943, 1349, 1529
Hpy8I	GTNNAC	6 cut(s)	138, 568, 837, 943, 1349, 1529
Hpy99I	CGWCG	6 cut(s)	98, 101, 122, 215, 596, 1185
HpyAV	CCTTC	6 cut(s)	1337, 1517, 1618, 2206, 2578, 2780
HpyCH4III	ACNGT	8 cut(s)	947, 1051, 1162, 1517, 1614, 1777, 1829, 1999
HpyCH4IV	ACGT	4 cut(s)	132, 416, 1546, 2451
HpySE526I	ACGT	4 cut(s)	132, 416, 1546, 2451
Hsp92I	GRCGYC	1 cut(s)	591
Hsp92II	CATG	9 cut(s)	439, 728, 1199, 1463, 1562, 1702, 2235, 2587, 2665
HspAI	GCGC	2 cut(s)	1682, 2616
Kpn2I	TCCGGA	1 cut(s)	1329
Ksp22I	TGATCA	1 cut(s)	1357
KspAI	GTTAAC	1 cut(s)	943
LmnI	GCTCC	7 cut(s)	189, 278, 356, 2129, 2272, 2381, 2722
Lsp1109I	GCAGC	8 cut(s)	138, 160, 361, 1289, 1495, 1517, 2630, 2757
MaeI	CTAG	4 cut(s)	141, 788, 1259, 1704
MaeII	ACGT	4 cut(s)	132, 416, 1546, 2451
MaeIII	GTNAC	3 cut(s)	2004, 2387, 2517
MbiI	CCGCTC	1 cut(s)	351
MflI	RGATCY	4 cut(s)	337, 1660, 2398, 2789
MhlI	GDGCHC	5 cut(s)	194, 234, 996, 1091, 2126
MlsI	TGGCCA	1 cut(s)	432
MluNI	TGGCCA	1 cut(s)	432
MlyI	GAGTC	6 cut(s)	102, 209, 689, 2189, 2368, 2672
MmeI	TCCRAC	4 cut(s)	117, 167, 606, 2434
Mox20I	TGGCCA	1 cut(s)	432
Mph1103I	ATGCAT	1 cut(s)	1912
MroI	TCCGGA	1 cut(s)	1329
MroXI	GAANNNNTTC	3 cut(s)	930, 2050, 2487
MscI	TGGCCA	1 cut(s)	432
MseI	TTAA	5 cut(s)	483, 942, 2163, 2514, 2717
MslI	CAYNNNNRTG	2 cut(s)	1320, 2230
Msp20I	TGGCCA	1 cut(s)	432
MspA1I	CMGCKG	2 cut(s)	151, 1508
MspCI	CTTAAG	1 cut(s)	2716
MspI	CCGG	6 cut(s)	77, 172, 270, 344, 449, 1330
MspR9I	CCNGG	8 cut(s)	78, 162, 278, 389, 449, 1991, 2079, 2427
Mva1269I	GAATGC	2 cut(s)	1279, 1912
MvaI	CCWGG	6 cut(s)	162, 278, 389, 1991, 2079, 2427
NciI	CCSGG	2 cut(s)	78, 449
NcoI	CCATGG	1 cut(s)	2661
NlaIII	CATG	9 cut(s)	439, 728, 1199, 1463, 1562, 1702, 2235, 2587, 2665
NlaIV	GGNNCC	6 cut(s)	191, 274, 339, 915, 1575, 1935
NmeAIII	GCCGAG	1 cut(s)	2773
NsbI	TGCGCA	1 cut(s)	1683
NsiI	ATGCAT	1 cut(s)	1912
NspI	RCATGY	3 cut(s)	439, 1199, 2587
PciI	ACATGT	2 cut(s)	435, 2583
PcsI	WCGNNNNNNNCGW	1 cut(s)	2428
PctI	GAATGC	2 cut(s)	1279, 1912
PdmI	GAANNNNTTC	3 cut(s)	930, 2050, 2487
PflMI	CCANNNNNTGG	2 cut(s)	683, 865
PfoI	TCCNGGA	2 cut(s)	1989, 2077
PleI	GAGTC	6 cut(s)	102, 209, 689, 2188, 2367, 2672
PpsI	GAGTC	6 cut(s)	102, 209, 689, 2188, 2367, 2672
PpuMI	RGGWCCY	2 cut(s)	1574, 2150
PscI	ACATGT	2 cut(s)	435, 2583
PshBI	ATTAAT	1 cut(s)	2163
PsiI	TTATAA	3 cut(s)	1394, 1667, 2375
Psp5II	RGGWCCY	2 cut(s)	1574, 2150
Psp6I	CCWGG	6 cut(s)	160, 276, 387, 1989, 2077, 2425
PspFI	CCCAGC	1 cut(s)	2410
PspGI	CCWGG	6 cut(s)	160, 276, 387, 1989, 2077, 2425
PspN4I	GGNNCC	6 cut(s)	191, 274, 339, 915, 1575, 1935
PspPI	GGNCC	5 cut(s)	346, 1189, 1574, 2072, 2150
PspPPI	RGGWCCY	2 cut(s)	1574, 2150
PstNI	CAGNNNCTG	2 cut(s)	154, 1511
PsuI	RGATCY	4 cut(s)	337, 1660, 2398, 2789
PvuII	CAGCTG	2 cut(s)	151, 1508
RsaI	GTAC	5 cut(s)	30, 63, 849, 1924, 2171
RsaNI	GTAC	5 cut(s)	29, 62, 848, 1923, 2170
RseI	CAYNNNNRTG	2 cut(s)	1320, 2230
Rsr2I	CGGWCCG	1 cut(s)	346
RsrII	CGGWCCG	1 cut(s)	346
SaqAI	TTAA	5 cut(s)	483, 942, 2163, 2514, 2717
Sau96I	GGNCC	5 cut(s)	346, 1189, 1574, 2072, 2150
SchI	GAGTC	6 cut(s)	102, 209, 689, 2189, 2368, 2672
ScrFI	CCNGG	8 cut(s)	78, 162, 278, 389, 449, 1991, 2079, 2427
SduI	GDGCHC	5 cut(s)	194, 234, 996, 1091, 2126
SinI	GGWCC	4 cut(s)	346, 1574, 2072, 2150
SmiMI	CAYNNNNRTG	2 cut(s)	1320, 2230
SmlI	CTYRAG	3 cut(s)	652, 1967, 2716
SmoI	CTYRAG	3 cut(s)	652, 1967, 2716
SpeI	ACTAGT	1 cut(s)	140
SsiI	CCGC	8 cut(s)	74, 114, 123, 341, 349, 536, 1312, 1532
SspI	AATATT	1 cut(s)	1059
SspMI	CTAG	4 cut(s)	141, 788, 1259, 1704
StyD4I	CCNGG	8 cut(s)	76, 160, 276, 387, 447, 1989, 2077, 2425
StyI	CCWWGG	1 cut(s)	2661
TaaI	ACNGT	8 cut(s)	947, 1051, 1162, 1517, 1614, 1777, 1829, 1999
TaiI	ACGT	4 cut(s)	135, 419, 1549, 2454
TaqI	TCGA	4 cut(s)	210, 1183, 2357, 2691
TaqII	GACCGA	1 cut(s)	173
TatI	WGTACW	1 cut(s)	2169
TauI	GCSGC	2 cut(s)	76, 125
Tru1I	TTAA	5 cut(s)	483, 942, 2163, 2514, 2717
Tru9I	TTAA	5 cut(s)	483, 942, 2163, 2514, 2717
TscAI	CASTG	8 cut(s)	30, 244, 367, 399, 1056, 1411, 1782, 2578
TseI	GCWGC	8 cut(s)	148, 151, 374, 1277, 1505, 1508, 2618, 2770
TspDTI	ATGAA	6 cut(s)	741, 1489, 1575, 1687, 2022, 2265
TspGWI	ACGGA	1 cut(s)	49
TspRI	CASTG	8 cut(s)	30, 244, 367, 399, 1056, 1411, 1782, 2578
Van91I	CCANNNNNTGG	2 cut(s)	683, 865
Vha464I	CTTAAG	1 cut(s)	2716
VpaK11BI	GGWCC	4 cut(s)	346, 1574, 2072, 2150
VspI	ATTAAT	1 cut(s)	2163
XagI	CCTNNNNNAGG	2 cut(s)	667, 2082
XapI	RAATTY	7 cut(s)	165, 709, 1109, 1333, 1400, 1634, 2131
XceI	RCATGY	3 cut(s)	439, 1199, 2587
XmiI	GTMKAC	2 cut(s)	137, 1528
XmnI	GAANNNNTTC	3 cut(s)	930, 2050, 2487
XspI	CTAG	4 cut(s)	141, 788, 1259, 1704
Zsp2I	ATGCAT	1 cut(s)	1912

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.