Rmu_sc0033483.1_g000001

Peroxisome biogenesis protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0033483.1
Physical Location & Seq
Forward (+)
835 .. 2697
1863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0033483.1_g000001.1.cds

Sequence Viewer

Length: 1290 bp
atggtggggaggaggaggaagccactggtactcacttccaccaaaactctcatcaaatccgtactaacttcgccgccgggagaactcacttccgacgacgatcaccgactctccgccgtcgccgctgatgacgtgtctactggtttgcagctgctgccgccgggaattctccggttctccatcggtcggagccccaaattggcttctctcgacgactctgctctcgttgggctctccactgctctcctcaaacgcctctgcatcacctccggctccctggtgcttgtgaagaatatggagacaaaaatagaaagaattgctcgggccattgttgtggatcctccggaccgctccgagaacactggactatctgctgcccaatcttcccaggcaatgcttattctgccttgttgcactttccctgaaaatggccacatgttgttagaccgggaagttgcctatatatcacctctgttggcatttaacattgacttgcatacattgtgcttgaaatcgcttgtccatagaggggaagccgcattggcatcttatttcggggatagagtggacgaagaggtgagtgggaaaggcgtcggggcttctgtgattggaatacaacctcagtcagagttgccaagatatgcttcgcacttgagggcttcctttgtgaggataccagaatgtggtagtcttgactctcttagaggaaattcggctgttgaacatgaagatcgtcaagaaatgatagatttggcactacatagctactttgaagttgataggtatctagcaagaggtgatgtttttagtatttgtataaaatggaattgcaagtcaacgatttgcgttccttgcaaccaaagtttggaaaatggggttgataacactatctatttcaaggttgtggctatggaacctttggacgaaccaattctccgagtaaaccgttctcaaactgcccttgtgcttggaggaagtgtctcttctgctgtgccccctgatttattgatttctggacaaaaaggtttcacacccttgcaaggggacacagtgaaaatattggcctccatacttacacctcttctgtgcccctcagcactatcttcaaaattcagagtatctgttctgttgtatggattggcaggatgtgggaagagaacagttgttagatacattgctcatcgattgggcctgcatgtagttgaatatagctgtcataatctgacggcgtcatctgaaaaaaagatgtctgttgcactagcccaaaccttgaatgcagctcaaaggtaa

Protein Analysis

429

Amino Acids

46.34

Weight (kDa)

8.21

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 683, 865
AccBSI CCGCTC 1 cut(s) 351
AccI GTMKAC 1 cut(s) 137
AccIII TCCGGA 1 cut(s) 343
AciI CCGC 6 cut(s) 74, 114, 123, 158, 349, 537
AclWI GGATC 2 cut(s) 332, 345
AcoI YGGCCR 1 cut(s) 430
AcsI RAATTY 3 cut(s) 165, 709, 1109
AcyI GRCGYC 2 cut(s) 591, 1229
AfaI GTAC 2 cut(s) 30, 63
AfiI CCNNNNNNNGG 9 cut(s) 186, 199, 428, 529, 669, 683, 865, 1040, 1041
AflIII ACRYGT 2 cut(s) 132, 435
AgsI TTSAA 7 cut(s) 511, 722, 773, 898, 1107, 1205, 1273
AjiI CACGTC 1 cut(s) 133
AjnI CCWGG 2 cut(s) 276, 387
AjuI GAANNNNNNNTTGG 2 cut(s) 628, 660
AloI GAACNNNNNNTCC 2 cut(s) 918, 950
AluBI AGCT 4 cut(s) 151, 765, 1212, 1280
AluI AGCT 4 cut(s) 151, 765, 1212, 1280
Alw26I GTCTC 2 cut(s) 293, 985
AlwI GGATC 2 cut(s) 332, 345
AlwNI CAGNNNCTG 1 cut(s) 154
Ama87I CYCGRG 1 cut(s) 321
Aor13HI TCCGGA 1 cut(s) 343
AoxI GGCC 4 cut(s) 324, 430, 1062, 1189
ApeKI GCWGC 5 cut(s) 148, 151, 154, 374, 1277
ApoI RAATTY 3 cut(s) 165, 709, 1109
Asp700I GAANNNNTTC 1 cut(s) 930
AspS9I GGNCC 3 cut(s) 324, 346, 1189
AsuC2I CCSGG 3 cut(s) 78, 162, 449
AsuHPI GGTGA 5 cut(s) 95, 256, 459, 589, 809
AvaI CYCGRG 1 cut(s) 321
AvaII GGWCC 1 cut(s) 346
BaeGI GKGCMC 2 cut(s) 996, 1091
BalI TGGCCA 1 cut(s) 432
BamHI GGATCC 1 cut(s) 337
BanII GRGCYC 2 cut(s) 194, 234
BbvCI CCTCAGC 1 cut(s) 1093
BbvI GCAGC 4 cut(s) 138, 141, 160, 361
BccI CCATC 1 cut(s) 188
BceAI ACGGC 2 cut(s) 101, 1242
BcgI CGANNNNNNTGC 2 cut(s) 200, 234
BciT130I CCWGG 2 cut(s) 278, 389
BciVI GTATCC 1 cut(s) 666
BcnI CCSGG 3 cut(s) 78, 162, 449
BcoDI GTCTC 2 cut(s) 293, 985
BfaI CTAG 2 cut(s) 788, 1259
BfuI GTATCC 1 cut(s) 666
BglI GCCNNNNNGGC 1 cut(s) 542
BisI GCNGC 9 cut(s) 74, 123, 149, 152, 155, 158, 375, 537, 1278
BlsI GCNGC 9 cut(s) 75, 124, 150, 153, 156, 159, 376, 538, 1279
Bme1390I CCNGG 5 cut(s) 78, 162, 278, 389, 449
Bme18I GGWCC 1 cut(s) 346
BmeT110I CYCGRG 1 cut(s) 321
BmgBI CACGTC 1 cut(s) 133
BmgT120I GGNCC 3 cut(s) 324, 346, 1189
BmiI GGNNCC 4 cut(s) 191, 274, 339, 915
BmrFI CCNGG 5 cut(s) 78, 162, 278, 389, 449
BmsI GCATC 2 cut(s) 270, 554
Bpu10I CCTNAGC 1 cut(s) 1093
BpuEI CTTGAG 1 cut(s) 673
BpuMI CCSGG 3 cut(s) 78, 162, 449
Bsa29I ATCGAT 1 cut(s) 1183
BsaBI GATNNNNATC 1 cut(s) 783
BsaHI GRCGYC 2 cut(s) 591, 1229
BsaJI CCNNGG 2 cut(s) 276, 387
BsaWI WCCGGW 2 cut(s) 171, 343
BsaXI ACNNNNNCTCC 6 cut(s) 95, 125, 918, 948, 963, 993
Bsc4I CCNNNNNNNGG 9 cut(s) 186, 199, 428, 529, 669, 683, 865, 1040, 1041
Bse1I ACTGG 3 cut(s) 30, 145, 367
Bse3DI GCAATG 2 cut(s) 399, 1173
Bse8I GATNNNNATC 1 cut(s) 783
BseAI TCCGGA 1 cut(s) 343
BseBI CCWGG 2 cut(s) 278, 389
BseCI ATCGAT 1 cut(s) 1183
BseDI CCNNGG 2 cut(s) 276, 387
BseGI GGATG 1 cut(s) 1151
BseJI GATNNNNATC 1 cut(s) 783
BseLI CCNNNNNNNGG 9 cut(s) 186, 199, 428, 529, 669, 683, 865, 1040, 1041
BseMI GCAATG 2 cut(s) 399, 1173
BseMII CTCAG 2 cut(s) 635, 1107
BseNI ACTGG 3 cut(s) 30, 145, 367
BseRI GAGGAG 3 cut(s) 25, 28, 236
BseSI GKGCMC 2 cut(s) 996, 1091
BseXI GCAGC 4 cut(s) 138, 141, 160, 361
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 4 cut(s) 326, 432, 1064, 1191
BshVI ATCGAT 1 cut(s) 1183
BsiEI CGRYCG 1 cut(s) 187
BsiHKCI CYCGRG 1 cut(s) 321
BsiSI CCGG 6 cut(s) 77, 161, 172, 270, 344, 448
BslFI GGGAC 1 cut(s) 1058
BslI CCNNNNNNNGG 9 cut(s) 186, 199, 428, 529, 669, 683, 865, 1040, 1041
BsmAI GTCTC 2 cut(s) 293, 985
BsmFI GGGAC 1 cut(s) 1058
BsmI GAATGC 1 cut(s) 1279
BsnI GGCC 4 cut(s) 326, 432, 1064, 1191
BsoBI CYCGRG 1 cut(s) 321
Bsp1286I GDGCHC 4 cut(s) 194, 234, 996, 1091
Bsp13I TCCGGA 1 cut(s) 343
Bsp143I GATC 3 cut(s) 100, 337, 730
BspACI CCGC 6 cut(s) 74, 114, 123, 158, 349, 537
BspANI GGCC 4 cut(s) 326, 432, 1064, 1191
BspCNI CTCAG 2 cut(s) 634, 1106
BspDI ATCGAT 1 cut(s) 1183
BspEI TCCGGA 1 cut(s) 343
BspLI GGNNCC 4 cut(s) 191, 274, 339, 915
BspPI GGATC 2 cut(s) 332, 345
BsrBI CCGCTC 1 cut(s) 351
BsrDI GCAATG 2 cut(s) 399, 1173
BsrI ACTGG 3 cut(s) 30, 145, 367
BssECI CCNNGG 2 cut(s) 276, 387
BssMI GATC 3 cut(s) 100, 337, 730
BssNI GRCGYC 2 cut(s) 591, 1229
Bst2UI CCWGG 2 cut(s) 278, 389
Bst4CI ACNGT 3 cut(s) 947, 1051, 1162
Bst6I CTCTTC 4 cut(s) 567, 988, 1086, 1148
BstACI GRCGYC 2 cut(s) 591, 1229
BstAPI GCANNNNNTGC 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 1193
BstDEI CTNAG 3 cut(s) 621, 701, 1093
BstENI CCTNNNNNAGG 1 cut(s) 667
BstF5I GGATG 1 cut(s) 1151
BstKTI GATC 3 cut(s) 103, 340, 733
BstMAI GTCTC 2 cut(s) 293, 985
BstMBI GATC 3 cut(s) 100, 337, 730
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 6 cut(s) 122, 154, 157, 403, 542, 852
BstNI CCWGG 2 cut(s) 278, 389
BstNSI RCATGY 2 cut(s) 439, 1199
BstSCI CCNGG 5 cut(s) 76, 160, 276, 387, 447
BstSLI GKGCMC 2 cut(s) 996, 1091
BstV1I GCAGC 4 cut(s) 138, 141, 160, 361
BstX2I RGATCY 1 cut(s) 337
BstXI CCANNNNNNTGG 1 cut(s) 334
BstYI RGATCY 1 cut(s) 337
Bsu15I ATCGAT 1 cut(s) 1183
BsuI GTATCC 1 cut(s) 666
BsuRI GGCC 4 cut(s) 326, 432, 1064, 1191
BsuTUI ATCGAT 1 cut(s) 1183
BtrI CACGTC 1 cut(s) 133
BtsCI GGATG 1 cut(s) 1151
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 4 cut(s) 23, 237, 360, 1056
Cac8I GCNNGC 1 cut(s) 1193
CaiI CAGNNNCTG 1 cut(s) 154
Cfr13I GGNCC 3 cut(s) 324, 346, 1189
ClaI ATCGAT 1 cut(s) 1183
CpoI CGGWCCG 1 cut(s) 346
CseI GACGC 2 cut(s) 580, 1218
Csp6I GTAC 2 cut(s) 29, 62
CspI CGGWCCG 1 cut(s) 346
CviAII CATG 3 cut(s) 436, 725, 1196
CviQI GTAC 2 cut(s) 29, 62
DdeI CTNAG 3 cut(s) 621, 701, 1093
DpnI GATC 3 cut(s) 102, 339, 732
DpnII GATC 3 cut(s) 100, 337, 730
EaeI YGGCCR 1 cut(s) 430
Eam1104I CTCTTC 4 cut(s) 567, 988, 1086, 1148
EarI CTCTTC 4 cut(s) 567, 988, 1086, 1148
EciI GGCGGA 1 cut(s) 103
Eco24I GRGCYC 2 cut(s) 194, 234
Eco47I GGWCC 1 cut(s) 346
Eco88I CYCGRG 1 cut(s) 321
EcoNI CCTNNNNNAGG 1 cut(s) 667
EcoRI GAATTC 1 cut(s) 165
EcoRII CCWGG 2 cut(s) 276, 387
EcoT38I GRGCYC 2 cut(s) 194, 234
FaeI CATG 3 cut(s) 439, 728, 1199
FalI AAGNNNNNCTT 4 cut(s) 628, 660, 967, 999
FaqI GGGAC 1 cut(s) 1058
FatI CATG 3 cut(s) 435, 724, 1195
FblI GTMKAC 1 cut(s) 137
Fnu4HI GCNGC 9 cut(s) 74, 123, 149, 152, 155, 158, 375, 537, 1278
FokI GGATG 1 cut(s) 1158
FriOI GRGCYC 2 cut(s) 194, 234
Fsp4HI GCNGC 9 cut(s) 74, 123, 149, 152, 155, 158, 375, 537, 1278
FspBI CTAG 2 cut(s) 788, 1259
GluI GCNGC 9 cut(s) 74, 123, 149, 152, 155, 158, 375, 537, 1278
HaeIII GGCC 4 cut(s) 326, 432, 1064, 1191
HapII CCGG 6 cut(s) 77, 161, 172, 270, 344, 448
HgaI GACGC 2 cut(s) 580, 1218
Hin1I GRCGYC 2 cut(s) 591, 1229
Hin1II CATG 3 cut(s) 439, 728, 1199
HincII GTYRAC 1 cut(s) 837
HindII GTYRAC 1 cut(s) 837
HinfI GANTC 3 cut(s) 108, 215, 695
HpaII CCGG 6 cut(s) 77, 161, 172, 270, 344, 448
HphI GGTGA 5 cut(s) 95, 256, 459, 589, 809
Hpy166II GTNNAC 4 cut(s) 138, 568, 837, 943
Hpy188I TCNGA 8 cut(s) 94, 189, 355, 628, 938, 1115, 1224, 1237
Hpy188III TCNNGA 5 cut(s) 209, 344, 692, 737, 1014
Hpy8I GTNNAC 4 cut(s) 138, 568, 837, 943
Hpy99I CGWCG 5 cut(s) 98, 101, 122, 215, 596
HpyCH4III ACNGT 3 cut(s) 947, 1051, 1162
HpyCH4IV ACGT 1 cut(s) 132
HpyF10VI GCNNNNNNNGC 6 cut(s) 122, 154, 157, 403, 542, 852
HpyF3I CTNAG 3 cut(s) 621, 701, 1093
HpySE526I ACGT 1 cut(s) 132
Hsp92I GRCGYC 2 cut(s) 591, 1229
Hsp92II CATG 3 cut(s) 439, 728, 1199
Kpn2I TCCGGA 1 cut(s) 343
Kzo9I GATC 3 cut(s) 100, 337, 730
LmnI GCTCC 3 cut(s) 189, 278, 356
Lsp1109I GCAGC 4 cut(s) 138, 141, 160, 361
LweI GCATC 2 cut(s) 270, 554
MaeI CTAG 2 cut(s) 788, 1259
MaeII ACGT 1 cut(s) 132
MalI GATC 3 cut(s) 102, 339, 732
MbiI CCGCTC 1 cut(s) 351
MboI GATC 3 cut(s) 100, 337, 730
MboII GAAGA 8 cut(s) 301, 375, 584, 740, 975, 1073, 1095, 1165
MflI RGATCY 1 cut(s) 337
MhlI GDGCHC 4 cut(s) 194, 234, 996, 1091
MlsI TGGCCA 1 cut(s) 432
MluCI AATT 7 cut(s) 165, 197, 315, 709, 826, 930, 1109
MluNI TGGCCA 1 cut(s) 432
MlyI GAGTC 3 cut(s) 102, 209, 689
MmeI TCCRAC 2 cut(s) 117, 167
Mox20I TGGCCA 1 cut(s) 432
MroI TCCGGA 1 cut(s) 343
MroXI GAANNNNTTC 1 cut(s) 930
MscI TGGCCA 1 cut(s) 432
MseI TTAA 1 cut(s) 483
MslI CAYNNNNRTG 1 cut(s) 332
Msp20I TGGCCA 1 cut(s) 432
MspA1I CMGCKG 2 cut(s) 125, 151
MspI CCGG 6 cut(s) 77, 161, 172, 270, 344, 448
MspR9I CCNGG 5 cut(s) 78, 162, 278, 389, 449
Mva1269I GAATGC 1 cut(s) 1279
MvaI CCWGG 2 cut(s) 278, 389
MwoI GCNNNNNNNGC 6 cut(s) 122, 154, 157, 403, 542, 852
NciI CCSGG 3 cut(s) 78, 162, 449
NdeII GATC 3 cut(s) 100, 337, 730
NlaIII CATG 3 cut(s) 439, 728, 1199
NlaIV GGNNCC 4 cut(s) 191, 274, 339, 915
NspI RCATGY 2 cut(s) 439, 1199
PciI ACATGT 1 cut(s) 435
PctI GAATGC 1 cut(s) 1279
PdmI GAANNNNTTC 1 cut(s) 930
PflFI GACNNNGTC 1 cut(s) 1228
PflMI CCANNNNNTGG 2 cut(s) 683, 865
PkrI GCNGC 9 cut(s) 75, 124, 150, 153, 156, 159, 376, 538, 1279
PleI GAGTC 3 cut(s) 102, 209, 689
PpsI GAGTC 3 cut(s) 102, 209, 689
PscI ACATGT 1 cut(s) 435
Psp6I CCWGG 2 cut(s) 276, 387
PspGI CCWGG 2 cut(s) 276, 387
PspN4I GGNNCC 4 cut(s) 191, 274, 339, 915
PspPI GGNCC 3 cut(s) 324, 346, 1189
PstNI CAGNNNCTG 1 cut(s) 154
PsuI RGATCY 1 cut(s) 337
PsyI GACNNNGTC 1 cut(s) 1228
PvuII CAGCTG 1 cut(s) 151
RsaI GTAC 2 cut(s) 30, 63
RsaNI GTAC 2 cut(s) 29, 62
RseI CAYNNNNRTG 1 cut(s) 332
Rsr2I CGGWCCG 1 cut(s) 346
RsrII CGGWCCG 1 cut(s) 346
SaqAI TTAA 1 cut(s) 483
SatI GCNGC 9 cut(s) 74, 123, 149, 152, 155, 158, 375, 537, 1278
Sau3AI GATC 3 cut(s) 100, 337, 730
Sau96I GGNCC 3 cut(s) 324, 346, 1189
SchI GAGTC 3 cut(s) 102, 209, 689
ScrFI CCNGG 5 cut(s) 78, 162, 278, 389, 449
SduI GDGCHC 4 cut(s) 194, 234, 996, 1091
SfaNI GCATC 2 cut(s) 270, 554
SinI GGWCC 1 cut(s) 346
SmiMI CAYNNNNRTG 1 cut(s) 332
SmlI CTYRAG 1 cut(s) 652
SmoI CTYRAG 1 cut(s) 652
Sse9I AATT 7 cut(s) 165, 197, 315, 709, 826, 930, 1109
SsiI CCGC 6 cut(s) 74, 114, 123, 158, 349, 537
SspI AATATT 1 cut(s) 1059
SspMI CTAG 2 cut(s) 788, 1259
StyD4I CCNGG 5 cut(s) 76, 160, 276, 387, 447
TaaI ACNGT 3 cut(s) 947, 1051, 1162
TaiI ACGT 1 cut(s) 135
TaqI TCGA 2 cut(s) 210, 1183
TaqII GACCGA 1 cut(s) 173
TasI AATT 7 cut(s) 165, 197, 315, 709, 826, 930, 1109
TauI GCSGC 4 cut(s) 76, 125, 160, 539
Tru1I TTAA 1 cut(s) 483
Tru9I TTAA 1 cut(s) 483
TscAI CASTG 4 cut(s) 30, 244, 367, 1056
TseI GCWGC 5 cut(s) 148, 151, 154, 374, 1277
TspDTI ATGAA 1 cut(s) 741
TspGWI ACGGA 1 cut(s) 49
TspRI CASTG 4 cut(s) 30, 244, 367, 1056
Tth111I GACNNNGTC 1 cut(s) 1228
Van91I CCANNNNNTGG 2 cut(s) 683, 865
VpaK11BI GGWCC 1 cut(s) 346
XagI CCTNNNNNAGG 1 cut(s) 667
XapI RAATTY 3 cut(s) 165, 709, 1109
XceI RCATGY 2 cut(s) 439, 1199
XmiI GTMKAC 1 cut(s) 137
XmnI GAANNNNTTC 1 cut(s) 930
XspI CTAG 2 cut(s) 788, 1259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.