Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8222790.1

Orthogroup ID

OG0006884

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 654

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8222790.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 488 bp

atggagacaaaaatagaaagaattgctcgggccattgttgtggatcctccggaccgctccgagaacactggactatctgctgcccaatcttcccaggcaatgcttattctgccttgttgcactttccctgaaaatggccacatgttgttagaccgggaagttgcctatatatcacctctgttggcatttaacattgacttgcatacattgtgcttgaaatcgcttgtccatagaggggaagcggcgttggcatcttatttcggggatagagtggacgaagaggtgagtgggaaaggcgtcggggcttctgtgattggaatacaacctcagtcagagttgccaagatatgcttcgcacttgagggcttcctttgtgaggataccagaatgtggtagtcttgactctcttagaggaaattcggctgttgaacatgaagatcgtcaagaaatgatagatttggcactgcatagctactttgaagttgatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0017038 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0042886 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0065002 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

AAA

Protein Analysis

162

Amino Acids

17.79

Weight (kDa)

4.98

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03000
fragaria_vesca	FvH4_2g25060 FvH4_2g25060 FvH4_2g25060 FvH4_2g25060 FvH4_2g25060 FvH4_2g25060 FvH4_2g25060
malus_domestica	MD11G1301700.v1.1
prunus_persica	Prupe.8G255300_v2.0.a1 Prupe.8G255300_v2.0.a1 Prupe.8G255300_v2.0.a1
pyrus_communis	pycom11g26430
rosa_chinensis	RchiOBHm_Chr6g0293081
rosa_laevigata	RLG00000011973
rosa_multiflora	Rmu_co8222790.1_g000001 Rmu_sc0003615.1_g000004 Rmu_sc0033483.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174440
rosa_rugosa	Rorug06G0232600.1 Rorug06G0232700
rosa_samantha	Rh6AG345400 Rh6BG352900 Rh6CG359400 Rh6DG345400
rosa_wichuraiana	Rw6G030100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	389
AccBSI	CCGCTC	1 cut(s)	57
AccIII	TCCGGA	1 cut(s)	49
AciI	CCGC	2 cut(s)	55, 242
AclWI	GGATC	2 cut(s)	38, 51
AcoI	YGGCCR	1 cut(s)	136
AcsI	RAATTY	1 cut(s)	415
AcyI	GRCGYC	1 cut(s)	297
AfiI	CCNNNNNNNGG	4 cut(s)	134, 235, 375, 389
AflIII	ACRYGT	1 cut(s)	141
AgsI	TTSAA	3 cut(s)	217, 428, 479
AjnI	CCWGG	1 cut(s)	93
AjuI	GAANNNNNNNTTGG	2 cut(s)	334, 366
AluBI	AGCT	1 cut(s)	471
AluI	AGCT	1 cut(s)	471
AlwI	GGATC	2 cut(s)	38, 51
Ama87I	CYCGRG	1 cut(s)	27
Aor13HI	TCCGGA	1 cut(s)	49
AoxI	GGCC	2 cut(s)	30, 136
ApeKI	GCWGC	1 cut(s)	80
ApoI	RAATTY	1 cut(s)	415
AspS9I	GGNCC	2 cut(s)	30, 52
AsuC2I	CCSGG	1 cut(s)	155
AsuHPI	GGTGA	2 cut(s)	165, 295
AvaI	CYCGRG	1 cut(s)	27
AvaII	GGWCC	1 cut(s)	52
BalI	TGGCCA	1 cut(s)	138
BamHI	GGATCC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	67
BciT130I	CCWGG	1 cut(s)	95
BciVI	GTATCC	1 cut(s)	372
BcnI	CCSGG	1 cut(s)	155
BfuI	GTATCC	1 cut(s)	372
BisI	GCNGC	2 cut(s)	81, 243
BlsI	GCNGC	2 cut(s)	82, 244
Bme1390I	CCNGG	2 cut(s)	95, 155
Bme18I	GGWCC	1 cut(s)	52
BmeT110I	CYCGRG	1 cut(s)	27
BmgT120I	GGNCC	2 cut(s)	30, 52
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	2 cut(s)	95, 155
BmsI	GCATC	1 cut(s)	260
BpuEI	CTTGAG	1 cut(s)	379
BpuMI	CCSGG	1 cut(s)	155
BsaHI	GRCGYC	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	93
BsaWI	WCCGGW	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	4 cut(s)	134, 235, 375, 389
Bse1I	ACTGG	1 cut(s)	73
Bse3DI	GCAATG	1 cut(s)	105
BseAI	TCCGGA	1 cut(s)	49
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	1 cut(s)	93
BseLI	CCNNNNNNNGG	4 cut(s)	134, 235, 375, 389
BseMI	GCAATG	1 cut(s)	105
BseMII	CTCAG	1 cut(s)	341
BseNI	ACTGG	1 cut(s)	73
BseXI	GCAGC	1 cut(s)	67
BshFI	GGCC	2 cut(s)	32, 138
BsiHKCI	CYCGRG	1 cut(s)	27
BsiSI	CCGG	2 cut(s)	50, 154
BslI	CCNNNNNNNGG	4 cut(s)	134, 235, 375, 389
BsnI	GGCC	2 cut(s)	32, 138
BsoBI	CYCGRG	1 cut(s)	27
Bsp13I	TCCGGA	1 cut(s)	49
Bsp143I	GATC	2 cut(s)	43, 436
BspACI	CCGC	2 cut(s)	55, 242
BspANI	GGCC	2 cut(s)	32, 138
BspCNI	CTCAG	1 cut(s)	340
BspEI	TCCGGA	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	45
BspPI	GGATC	2 cut(s)	38, 51
BsrBI	CCGCTC	1 cut(s)	57
BsrDI	GCAATG	1 cut(s)	105
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	2 cut(s)	43, 436
BssNI	GRCGYC	1 cut(s)	297
Bst2UI	CCWGG	1 cut(s)	95
Bst6I	CTCTTC	1 cut(s)	273
BstACI	GRCGYC	1 cut(s)	297
BstDEI	CTNAG	2 cut(s)	327, 407
BstENI	CCTNNNNNAGG	1 cut(s)	373
BstKTI	GATC	2 cut(s)	46, 439
BstMBI	GATC	2 cut(s)	43, 436
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 248
BstNI	CCWGG	1 cut(s)	95
BstNSI	RCATGY	1 cut(s)	145
BstSCI	CCNGG	2 cut(s)	93, 153
BstV1I	GCAGC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	43
BstXI	CCANNNNNNTGG	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	43
BsuI	GTATCC	1 cut(s)	372
BsuRI	GGCC	2 cut(s)	32, 138
BtsI	GCAGTG	1 cut(s)	461
BtsIMutI	CAGTG	2 cut(s)	66, 461
Cfr13I	GGNCC	2 cut(s)	30, 52
CpoI	CGGWCCG	1 cut(s)	52
CseI	GACGC	1 cut(s)	286
CspI	CGGWCCG	1 cut(s)	52
CviAII	CATG	2 cut(s)	142, 431
CviJI	RGCY	6 cut(s)	32, 138, 305, 365, 422, 471
CviKI_1	RGCY	6 cut(s)	32, 138, 305, 365, 422, 471
DdeI	CTNAG	2 cut(s)	327, 407
DpnI	GATC	2 cut(s)	45, 438
DpnII	GATC	2 cut(s)	43, 436
EaeI	YGGCCR	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	52
Eco88I	CYCGRG	1 cut(s)	27
EcoNI	CCTNNNNNAGG	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	93
FaeI	CATG	2 cut(s)	145, 434
FaiI	YATR	8 cut(s)	143, 168, 170, 204, 231, 348, 432, 468
FalI	AAGNNNNNCTT	2 cut(s)	334, 366
FatI	CATG	2 cut(s)	141, 430
Fnu4HI	GCNGC	2 cut(s)	81, 243
Fsp4HI	GCNGC	2 cut(s)	81, 243
GluI	GCNGC	2 cut(s)	81, 243
HaeIII	GGCC	2 cut(s)	32, 138
HapII	CCGG	2 cut(s)	50, 154
HgaI	GACGC	1 cut(s)	286
Hin1I	GRCGYC	1 cut(s)	297
Hin1II	CATG	2 cut(s)	145, 434
HinfI	GANTC	1 cut(s)	401
HpaII	CCGG	2 cut(s)	50, 154
HphI	GGTGA	2 cut(s)	165, 295
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	2 cut(s)	61, 334
Hpy188III	TCNNGA	3 cut(s)	50, 398, 443
Hpy8I	GTNNAC	1 cut(s)	274
Hpy99I	CGWCG	1 cut(s)	302
HpyCH4V	TGCA	3 cut(s)	120, 202, 466
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 248
HpyF3I	CTNAG	2 cut(s)	327, 407
Hsp92I	GRCGYC	1 cut(s)	297
Hsp92II	CATG	2 cut(s)	145, 434
Kpn2I	TCCGGA	1 cut(s)	49
Kzo9I	GATC	2 cut(s)	43, 436
LmnI	GCTCC	1 cut(s)	62
LpnPI	CCDG	7 cut(s)	54, 63, 80, 107, 141, 167, 396
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	1 cut(s)	260
MalI	GATC	2 cut(s)	45, 438
MbiI	CCGCTC	1 cut(s)	57
MboI	GATC	2 cut(s)	43, 436
MboII	GAAGA	3 cut(s)	81, 290, 446
MflI	RGATCY	1 cut(s)	43
MlsI	TGGCCA	1 cut(s)	138
MluCI	AATT	2 cut(s)	21, 415
MluNI	TGGCCA	1 cut(s)	138
MlyI	GAGTC	1 cut(s)	395
MnlI	CCTC	8 cut(s)	57, 186, 227, 274, 336, 354, 369, 404
Mox20I	TGGCCA	1 cut(s)	138
MroI	TCCGGA	1 cut(s)	49
MscI	TGGCCA	1 cut(s)	138
MseI	TTAA	1 cut(s)	189
MslI	CAYNNNNRTG	1 cut(s)	38
Msp20I	TGGCCA	1 cut(s)	138
MspI	CCGG	2 cut(s)	50, 154
MspR9I	CCNGG	2 cut(s)	95, 155
MvaI	CCWGG	1 cut(s)	95
MwoI	GCNNNNNNNGC	2 cut(s)	109, 248
NciI	CCSGG	1 cut(s)	155
NdeII	GATC	2 cut(s)	43, 436
NlaIII	CATG	2 cut(s)	145, 434
NlaIV	GGNNCC	1 cut(s)	45
NspI	RCATGY	1 cut(s)	145
PciI	ACATGT	1 cut(s)	141
PflMI	CCANNNNNTGG	1 cut(s)	389
PkrI	GCNGC	2 cut(s)	82, 244
PleI	GAGTC	1 cut(s)	395
PpsI	GAGTC	1 cut(s)	395
PscI	ACATGT	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	2 cut(s)	30, 52
PsuI	RGATCY	1 cut(s)	43
RseI	CAYNNNNRTG	1 cut(s)	38
Rsr2I	CGGWCCG	1 cut(s)	52
RsrII	CGGWCCG	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	2 cut(s)	81, 243
Sau3AI	GATC	2 cut(s)	43, 436
Sau96I	GGNCC	2 cut(s)	30, 52
SchI	GAGTC	1 cut(s)	395
ScrFI	CCNGG	2 cut(s)	95, 155
SetI	ASST	4 cut(s)	178, 285, 328, 473
SfaNI	GCATC	1 cut(s)	260
SinI	GGWCC	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	358
SmoI	CTYRAG	1 cut(s)	358
Sse9I	AATT	2 cut(s)	21, 415
SsiI	CCGC	2 cut(s)	55, 242
StyD4I	CCNGG	2 cut(s)	93, 153
TasI	AATT	2 cut(s)	21, 415
TauI	GCSGC	1 cut(s)	245
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	2 cut(s)	73, 468
TseI	GCWGC	1 cut(s)	80
TspDTI	ATGAA	1 cut(s)	447
TspRI	CASTG	2 cut(s)	73, 468
Van91I	CCANNNNNTGG	1 cut(s)	389
VpaK11BI	GGWCC	1 cut(s)	52
XagI	CCTNNNNNAGG	1 cut(s)	373
XapI	RAATTY	1 cut(s)	415
XceI	RCATGY	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.