Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004584

Physical Location & Seq

Genomic Coordinates Forward (+)

42066632 .. 42069872

Gene Structure 3241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1306200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2067 bp

ATGCGTGCGTGGGCGTTGTCTGTTTGGTTTATCCGTGACGCTTTTTGGCTCTCTTCCCCCCTCCGTCCATGTCTTTTTCTTTCCTACTCCATTTTGCACTCCTTCCTCCACCATGAAAAAACGCTTCTCACTTTCAGAAGCTCAGCTCCTGCGAAAATGGACAGCTCAGATCACTCCTTCAGAGCTCCCCAATTGATCTCTCACCCTCACTTCGTCTCTCCCCTCAAGCCTCAAGCCTGCATATTCGTTGAAAAAATGGAGTCCTGTGATTGCATAGACGCGCAATGGCCCCCAGATGAGCTGCTGGTGAAATATCAGTACATCTCTGATGTGTTCATTGCCCTTGCCTATTTCTCCATTCCCTTGGAGCTCATATATTTTGTGCAGAAATCCGCTTTCTTTCCGTACAGATGGGTGCTTGTGCAGTTCGGTGCTTTCATTGTTCTTTGTGGAGCAACCCATTTCATAAATGTATGGACTTTCTCTATGCACACCAAAACTGTTGCCATATTCATGACTGTTGCCAAGGTTTCGTGTGCCGTTGTATCGTGTGCTACCGCTCTAATGCTCGTTCACATTATCCCGGATTTGCTAAGCGTCAAGAAACGGGAGCTGTCGCTGAAGAGCAGAGCTGAAGAGCTTGACAAGGAGATGGGGCTTATGCTCACTCAGGAAGAAACAGGAAGGCATGTTAGGATGCTGACTCATGAAATTCGAAGCACGTTGGATAGGCACACTATATTGAAAACTACCCTTGTTGAGTTGGGTAGAACTCTAGGCCTCCAGGAATGCGCGTTATGGATGCCGTCCAGAACTGGTATGAACCTACAGCTTTCTCACACTCTGAACTACCACATACAAGCTGGGTCATCTGTGTCAATGGACCTTCCTGTTGTCAACGAAGTCTTCAACAGTTCTCGGGCAATTCGTATACCATATACCTGCCCACTGGCAAGAATCAGACCGCTTGTGGGAAGATATGTACCACCTGAGGTTGTTGCTCTGCGGGTGCCCCTTTTAAATCTTTCAAATTTTCAAATCAATGACTGGCCGGATGTCTCTGCCAAAAGCTACGCAATCATGGTTTTGATTCTACCCACGGATGGCACCAGAAAGTGGCGAGAACATGAACTGGAGCTGGTTGATGTTGTGGCAGATCAGGTAGCTGTTGCTCTTTCACATGCTGCTATTCTGGAAGAGTCTATGCGAGCCCGTAAACAGCTCACGGAGCAGAACGATGCTTTAGATTTAGCTTGGAGAGAAGCAGAGATGGCAATCCATGCCCGCGATGATTTCCTTGCTGTCATGAACCATGAAATGAGGACACCAATGCATGCAATCATTGCATTGTCTTCTCTTCTGTTAGAGACGGAACTGACTCCGGAAGAAAGGCTTATGATAGAGACAGCACTAAAGAGTAGCAACCTTTTGGAAACACTTGTTAATGATGTTTTAGATCTTTCTAGACTTGAAGATGATAACCTAGAATTAGACACTGAAAGATTTAACCTCCATGGAATTTTCAGAGAGGTAATGAATTTGGTACAGCCCGTCGCATCTGTGAAGAAGTTGTCTATGACTTTGATTCAATCCCCTGACTTACCTGTGTATGCCGTTGGAGATGAGAATCGGCTGTTGCAAACTATTCTCAACGTTGCCGGTAATGCTGTGAAGTTCACAAAGCAGGGCTATATTTCAATTACAGCATCTGTTGCGAAATCAGAATCTTCAAGAGACTGGCAACCGCCGGAGTTTTATCCAGGGTCAACTGATGGTTACTTCTACCTACGAGTTCAGGTTAAGGATTCTGGCTGTGGTGTTCTCCCAGAAGATATTCCTCATCTTTTCACCAAGTTTTCTCAGCCCCGAAATGGATCCAATCAAATAAACAACGGTGCAGGACTTGGACTTGCCATTTGCAAACGGTTTGTAAACACCATGGGAGGTCATATTTGGATTGAAAGCGAGGGTATCGACAGAGGGAGTATCGTTGCATTCATCGTCCAACTAGGGATATGCGACAATCATAGTGATACAACAACACACCAGGTCCAGATTGCCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0012505 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023051 GO:0023057 GO:0036211 GO:0042562 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051740 GO:0065007 GO:0070297 GO:0070298 GO:0071704 GO:0072328 GO:0140096 GO:1901564 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

GAF HATPase_c HisKA Response_reg

Protein Analysis

689

Amino Acids

77.58

Weight (kDa)

6.01

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ETR1_N	PF25487	102 - 200	2.4e-37	Ethylene receptor 1-like, N-terminal domain
GAF	PF01590	243 - 392	6.7e-16	GAF domain
HisKA	PF00512	428 - 492	1.7e-16	His Kinase A (phospho-acceptor) domain
HATPase_c	PF02518	540 - 670	1.1e-21	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40940
fragaria_vesca	FvH4_2g26120 FvH4_2g26120 FvH4_2g26120
malus_domestica	MD03G1292200.v1.1 MD06G1001100.v1.1 MD11G1306200.v1.1
prunus_persica	Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1
pyrus_communis	pycom03g23140 pycom11g26800
rosa_chinensis	RchiOBHm_Chr6g0294491
rosa_laevigata	RLG00000011864
rosa_roxburghii	Rroxscaffold_7G00173280
rosa_rugosa	Rorug06G0245200 Rorug06G0245300 Rorug06G0245400
rosa_samantha	Rh6AG357700 Rh6BG364600 Rh6CG371700 Rh6DG358500
rosa_wichuraiana	Rw6G031200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	950
AccB1I	GGYRCC	2 cut(s)	1009, 1106
AccB7I	CCANNNNNTGG	1 cut(s)	1116
AccBSI	CCGCTC	1 cut(s)	560
AccI	GTMKAC	1 cut(s)	931
AccII	CGCG	3 cut(s)	281, 794, 1287
AccIII	TCCGGA	1 cut(s)	1381
AciI	CCGC	6 cut(s)	393, 558, 965, 1006, 1285, 1745
AclI	AACGTT	1 cut(s)	1653
AclWI	GGATC	2 cut(s)	1869, 1882
AcoI	YGGCCR	1 cut(s)	1049
AcsI	RAATTY	4 cut(s)	711, 1030, 1518, 1537
AcuI	CTGAAG	3 cut(s)	163, 641, 654
AfaI	GTAC	4 cut(s)	320, 407, 984, 1545
AfiI	CCNNNNNNNGG	4 cut(s)	971, 1103, 1116, 1871
AjnI	CCWGG	3 cut(s)	783, 1759, 2046
Alw21I	GWGCWC	2 cut(s)	187, 372
Alw26I	GTCTC	5 cut(s)	220, 1063, 1361, 1397, 1728
AlwI	GGATC	2 cut(s)	1869, 1882
AlwNI	CAGNNNCTG	2 cut(s)	149, 1709
Ama87I	CYCGRG	1 cut(s)	918
Aor13HI	TCCGGA	1 cut(s)	1381
AoxI	GGCC	3 cut(s)	287, 778, 1049
ApeKI	GCWGC	2 cut(s)	301, 1184
ApoI	RAATTY	4 cut(s)	711, 1030, 1518, 1537
ArsI	GACNNNNNNTTYG	2 cut(s)	1899, 1931
Asp700I	GAANNNNTTC	1 cut(s)	1833
AspLEI	GCGC	2 cut(s)	283, 794
AspS9I	GGNCC	3 cut(s)	288, 883, 2050
AsuC2I	CCSGG	1 cut(s)	584
AsuHPI	GGTGA	3 cut(s)	194, 319, 1840
AsuII	TTCGAA	1 cut(s)	715
AvaI	CYCGRG	1 cut(s)	918
AvaII	GGWCC	2 cut(s)	883, 2050
AxyI	CCTNAGG	1 cut(s)	990
BaeGI	GKGCMC	1 cut(s)	1014
BamHI	GGATCC	1 cut(s)	1874
BanI	GGYRCC	2 cut(s)	1009, 1106
BanII	GRGCYC	3 cut(s)	187, 372, 1213
BbsI	GAAGAC	2 cut(s)	898, 1344
Bbv12I	GWGCWC	2 cut(s)	187, 372
BbvI	GCAGC	2 cut(s)	288, 1171
BccI	CCATC	5 cut(s)	405, 646, 1097, 1264, 1766
BceAI	ACGGC	3 cut(s)	524, 790, 1598
BciT130I	CCWGG	3 cut(s)	785, 1761, 2048
BcnI	CCSGG	1 cut(s)	584
BcoDI	GTCTC	5 cut(s)	220, 1063, 1361, 1397, 1728
BfaI	CTAG	4 cut(s)	776, 1464, 1484, 2009
BfmI	CTRYAG	1 cut(s)	827
BfuAI	ACCTGC	1 cut(s)	950
BglII	AGATCT	1 cut(s)	1456
BisI	GCNGC	2 cut(s)	302, 1185
BlpI	GCTNAGC	2 cut(s)	142, 593
BlsI	GCNGC	2 cut(s)	303, 1186
Bme1390I	CCNGG	4 cut(s)	584, 785, 1761, 2048
Bme18I	GGWCC	2 cut(s)	883, 2050
BmeT110I	CYCGRG	1 cut(s)	918
BmgT120I	GGNCC	3 cut(s)	288, 883, 2050
BmiI	GGNNCC	4 cut(s)	290, 1011, 1108, 1876
BmrFI	CCNGG	4 cut(s)	584, 785, 1761, 2048
BmsI	GCATC	5 cut(s)	687, 792, 1228, 1565, 1715
BpiI	GAAGAC	2 cut(s)	898, 1344
BpmI	CTGGAG	2 cut(s)	767, 1154
Bpu1102I	GCTNAGC	2 cut(s)	142, 593
Bpu14I	TTCGAA	1 cut(s)	715
BpuEI	CTTGAG	2 cut(s)	209, 216
BpuMI	CCSGG	1 cut(s)	584
BsaBI	GATNNNNATC	2 cut(s)	1274, 1626
BsaJI	CCNNGG	6 cut(s)	363, 525, 1098, 1513, 1760, 1938
BsaWI	WCCGGW	1 cut(s)	1381
Bsc4I	CCNNNNNNNGG	4 cut(s)	971, 1103, 1116, 1871
Bse118I	RCCGGY	1 cut(s)	1658
Bse1I	ACTGG	5 cut(s)	820, 954, 1052, 1137, 1742
Bse21I	CCTNAGG	1 cut(s)	990
Bse3DI	GCAATG	3 cut(s)	290, 336, 1341
Bse8I	GATNNNNATC	2 cut(s)	1274, 1626
BseAI	TCCGGA	1 cut(s)	1381
BseBI	CCWGG	3 cut(s)	785, 1761, 2048
BseDI	CCNNGG	6 cut(s)	363, 525, 1098, 1513, 1760, 1938
BseGI	GGATG	4 cut(s)	702, 807, 1060, 1108
BseJI	GATNNNNATC	2 cut(s)	1274, 1626
BseLI	CCNNNNNNNGG	4 cut(s)	971, 1103, 1116, 1871
BseMI	GCAATG	3 cut(s)	290, 336, 1341
BseMII	CTCAG	5 cut(s)	156, 180, 683, 981, 1874
BseNI	ACTGG	5 cut(s)	820, 954, 1052, 1137, 1742
BseSI	GKGCMC	1 cut(s)	1014
BseXI	GCAGC	2 cut(s)	288, 1171
BseYI	CCCAGC	1 cut(s)	863
BsgI	GTGCAG	3 cut(s)	404, 443, 1917
Bsh1236I	CGCG	3 cut(s)	281, 794, 1287
BshFI	GGCC	3 cut(s)	289, 780, 1051
BshNI	GGYRCC	2 cut(s)	1009, 1106
BsiHKAI	GWGCWC	2 cut(s)	187, 372
BsiHKCI	CYCGRG	1 cut(s)	918
BsiSI	CCGG	5 cut(s)	584, 1052, 1382, 1659, 1748
BslI	CCNNNNNNNGG	4 cut(s)	971, 1103, 1116, 1871
BsmAI	GTCTC	5 cut(s)	220, 1063, 1361, 1397, 1728
BsmBI	CGTCTC	2 cut(s)	220, 1361
BsmI	GAATGC	2 cut(s)	794, 1994
BsnI	GGCC	3 cut(s)	289, 780, 1051
BsoBI	CYCGRG	1 cut(s)	918
Bsp119I	TTCGAA	1 cut(s)	715
Bsp1286I	GDGCHC	4 cut(s)	187, 372, 1014, 1213
Bsp13I	TCCGGA	1 cut(s)	1381
Bsp143I	GATC	5 cut(s)	169, 195, 1156, 1456, 1874
Bsp1720I	GCTNAGC	2 cut(s)	142, 593
Bsp19I	CCATGG	2 cut(s)	1513, 1938
BspACI	CCGC	6 cut(s)	393, 558, 965, 1006, 1285, 1745
BspANI	GGCC	3 cut(s)	289, 780, 1051
BspCNI	CTCAG	5 cut(s)	155, 179, 682, 982, 1873
BspEI	TCCGGA	1 cut(s)	1381
BspFNI	CGCG	3 cut(s)	281, 794, 1287
BspHI	TCATGA	3 cut(s)	513, 706, 1305
BspLI	GGNNCC	4 cut(s)	290, 1011, 1108, 1876
BspMI	ACCTGC	1 cut(s)	950
BspPI	GGATC	2 cut(s)	1869, 1882
BspQI	GCTCTTC	2 cut(s)	617, 630
BspT104I	TTCGAA	1 cut(s)	715
BspT107I	GGYRCC	2 cut(s)	1009, 1106
BsrBI	CCGCTC	1 cut(s)	560
BsrDI	GCAATG	3 cut(s)	290, 336, 1341
BsrFI	RCCGGY	1 cut(s)	1658
BsrI	ACTGG	5 cut(s)	820, 954, 1052, 1137, 1742
BssAI	RCCGGY	1 cut(s)	1658
BssECI	CCNNGG	6 cut(s)	363, 525, 1098, 1513, 1760, 1938
BssMI	GATC	5 cut(s)	169, 195, 1156, 1456, 1874
BssNAI	GTATAC	1 cut(s)	932
BssT1I	CCWWGG	4 cut(s)	363, 525, 1513, 1938
Bst1107I	GTATAC	1 cut(s)	932
Bst2UI	CCWGG	3 cut(s)	785, 1761, 2048
Bst4CI	ACNGT	5 cut(s)	502, 520, 914, 1895, 1926
Bst6I	CTCTTC	5 cut(s)	58, 617, 630, 1191, 1362
BstAPI	GCANNNNNTGC	3 cut(s)	1280, 1343, 1712
BstBI	TTCGAA	1 cut(s)	715
BstC8I	GCNNGC	5 cut(s)	6, 238, 1209, 1285, 1335
BstDEI	CTNAG	6 cut(s)	142, 166, 593, 669, 990, 1860
BstDSI	CCRYGG	3 cut(s)	1098, 1513, 1938
BstF5I	GGATG	4 cut(s)	702, 807, 1060, 1108
BstFNI	CGCG	3 cut(s)	281, 794, 1287
BstHHI	GCGC	2 cut(s)	283, 794
BstKTI	GATC	5 cut(s)	172, 198, 1159, 1459, 1877
BstMAI	GTCTC	5 cut(s)	220, 1063, 1361, 1397, 1728
BstMBI	GATC	5 cut(s)	169, 195, 1156, 1456, 1874
BstMWI	GCNNNNNNNGC	6 cut(s)	1228, 1271, 1280, 1343, 1664, 1712
BstNI	CCWGG	3 cut(s)	785, 1761, 2048
BstNSI	RCATGY	3 cut(s)	692, 1184, 1337
BstSCI	CCNGG	4 cut(s)	582, 783, 1759, 2046
BstSFI	CTRYAG	1 cut(s)	827
BstSLI	GKGCMC	1 cut(s)	1014
BstUI	CGCG	3 cut(s)	281, 794, 1287
BstV1I	GCAGC	2 cut(s)	288, 1171
BstV2I	GAAGAC	2 cut(s)	898, 1344
BstX2I	RGATCY	2 cut(s)	1456, 1874
BstXI	CCANNNNNNTGG	1 cut(s)	364
BstYI	RGATCY	2 cut(s)	1456, 1874
BstZ17I	GTATAC	1 cut(s)	932
Bsu36I	CCTNAGG	1 cut(s)	990
BsuRI	GGCC	3 cut(s)	289, 780, 1051
BtgI	CCRYGG	3 cut(s)	1098, 1513, 1938
BtgZI	GCGATG	1 cut(s)	1302
BtsCI	GGATG	4 cut(s)	702, 807, 1060, 1108
BtsIMutI	CAGTG	2 cut(s)	947, 1494
BveI	ACCTGC	1 cut(s)	950
Cac8I	GCNNGC	5 cut(s)	6, 238, 1209, 1285, 1335
CaiI	CAGNNNCTG	2 cut(s)	149, 1709
CciI	TCATGA	3 cut(s)	513, 706, 1305
CfoI	GCGC	2 cut(s)	283, 794
Cfr10I	RCCGGY	1 cut(s)	1658
Cfr13I	GGNCC	3 cut(s)	288, 883, 2050
CseI	GACGC	3 cut(s)	47, 287, 586
CsiI	ACCWGGT	1 cut(s)	2046
Csp6I	GTAC	4 cut(s)	319, 406, 983, 1544
CviQI	GTAC	4 cut(s)	319, 406, 983, 1544
DdeI	CTNAG	6 cut(s)	142, 166, 593, 669, 990, 1860
DpnI	GATC	5 cut(s)	171, 197, 1158, 1458, 1876
DpnII	GATC	5 cut(s)	169, 195, 1156, 1456, 1874
DraI	TTTAAA	1 cut(s)	1020
EaeI	YGGCCR	1 cut(s)	1049
Eam1104I	CTCTTC	5 cut(s)	58, 617, 630, 1191, 1362
EarI	CTCTTC	5 cut(s)	58, 617, 630, 1191, 1362
Ecl136II	GAGCTC	2 cut(s)	185, 370
Eco130I	CCWWGG	4 cut(s)	363, 525, 1513, 1938
Eco147I	AGGCCT	1 cut(s)	780
Eco24I	GRGCYC	3 cut(s)	187, 372, 1213
Eco47I	GGWCC	2 cut(s)	883, 2050
Eco53kI	GAGCTC	2 cut(s)	185, 370
Eco57I	CTGAAG	3 cut(s)	163, 641, 654
Eco81I	CCTNAGG	1 cut(s)	990
Eco88I	CYCGRG	1 cut(s)	918
EcoICRI	GAGCTC	2 cut(s)	185, 370
EcoRII	CCWGG	3 cut(s)	783, 1759, 2046
EcoT14I	CCWWGG	4 cut(s)	363, 525, 1513, 1938
EcoT22I	ATGCAT	1 cut(s)	1335
EcoT38I	GRGCYC	3 cut(s)	187, 372, 1213
ErhI	CCWWGG	4 cut(s)	363, 525, 1513, 1938
Esp3I	CGTCTC	2 cut(s)	220, 1361
FalI	AAGNNNNNCTT	2 cut(s)	1377, 1409
FauI	CCCGC	2 cut(s)	999, 1292
FblI	GTMKAC	1 cut(s)	931
Fnu4HI	GCNGC	2 cut(s)	302, 1185
FokI	GGATG	4 cut(s)	709, 814, 1067, 1115
FriOI	GRGCYC	3 cut(s)	187, 372, 1213
Fsp4HI	GCNGC	2 cut(s)	302, 1185
FspBI	CTAG	4 cut(s)	776, 1464, 1484, 2009
GlaI	GCGC	2 cut(s)	282, 793
GluI	GCNGC	2 cut(s)	302, 1185
GsaI	CCCAGC	1 cut(s)	867
GsuI	CTGGAG	2 cut(s)	767, 1154
HaeIII	GGCC	3 cut(s)	289, 780, 1051
HapII	CCGG	5 cut(s)	584, 1052, 1382, 1659, 1748
HgaI	GACGC	3 cut(s)	47, 287, 586
HhaI	GCGC	2 cut(s)	283, 794
Hin6I	GCGC	2 cut(s)	281, 792
HinP1I	GCGC	2 cut(s)	281, 792
HincII	GTYRAC	2 cut(s)	898, 1767
HindII	GTYRAC	2 cut(s)	898, 1767
HpaII	CCGG	5 cut(s)	584, 1052, 1382, 1659, 1748
HphI	GGTGA	3 cut(s)	194, 319, 1840
Hpy166II	GTNNAC	7 cut(s)	574, 898, 932, 1217, 1677, 1767, 1933
Hpy188I	TCNGA	8 cut(s)	137, 169, 182, 328, 846, 962, 1526, 1723
Hpy8I	GTNNAC	7 cut(s)	574, 898, 932, 1217, 1677, 1767, 1933
Hpy99I	CGWCG	1 cut(s)	1556
HpyAV	CCTTC	4 cut(s)	112, 187, 678, 896
HpyCH4III	ACNGT	5 cut(s)	502, 520, 914, 1895, 1926
HpyCH4IV	ACGT	2 cut(s)	722, 1653
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1228, 1271, 1280, 1343, 1664, 1712
HpyF3I	CTNAG	6 cut(s)	142, 166, 593, 669, 990, 1860
HpySE526I	ACGT	2 cut(s)	722, 1653
HspAI	GCGC	2 cut(s)	281, 792
Kpn2I	TCCGGA	1 cut(s)	1381
Kzo9I	GATC	5 cut(s)	169, 195, 1156, 1456, 1874
LguI	GCTCTTC	2 cut(s)	617, 630
LmnI	GCTCC	7 cut(s)	151, 190, 367, 452, 610, 1135, 1228
Lsp1109I	GCAGC	2 cut(s)	288, 1171
LweI	GCATC	5 cut(s)	687, 792, 1228, 1565, 1715
MabI	ACCWGGT	1 cut(s)	2046
MaeI	CTAG	4 cut(s)	776, 1464, 1484, 2009
MaeII	ACGT	2 cut(s)	722, 1653
MaeIII	GTNAC	2 cut(s)	35, 1775
MalI	GATC	5 cut(s)	171, 197, 1158, 1458, 1876
MbiI	CCGCTC	1 cut(s)	560
MboI	GATC	5 cut(s)	169, 195, 1156, 1456, 1874
MfeI	CAATTG	1 cut(s)	191
MflI	RGATCY	2 cut(s)	1456, 1874
MhlI	GDGCHC	4 cut(s)	187, 372, 1014, 1213
MluCI	AATT	8 cut(s)	191, 711, 924, 1030, 1487, 1518, 1537, 1698
MlyI	GAGTC	4 cut(s)	269, 697, 1208, 1372
MmeI	TCCRAC	3 cut(s)	705, 1597, 2029
Mph1103I	ATGCAT	1 cut(s)	1335
MroI	TCCGGA	1 cut(s)	1381
MroXI	GAANNNNTTC	1 cut(s)	1833
MseI	TTAA	4 cut(s)	1019, 1443, 1506, 1800
MslI	CAYNNNNRTG	1 cut(s)	512
MspI	CCGG	5 cut(s)	584, 1052, 1382, 1659, 1748
MspR9I	CCNGG	4 cut(s)	584, 785, 1761, 2048
MunI	CAATTG	1 cut(s)	191
Mva1269I	GAATGC	2 cut(s)	794, 1994
MvaI	CCWGG	3 cut(s)	785, 1761, 2048
MvnI	CGCG	3 cut(s)	281, 794, 1287
MwoI	GCNNNNNNNGC	6 cut(s)	1228, 1271, 1280, 1343, 1664, 1712
NciI	CCSGG	1 cut(s)	584
NcoI	CCATGG	2 cut(s)	1513, 1938
NdeII	GATC	5 cut(s)	169, 195, 1156, 1456, 1874
NlaIV	GGNNCC	4 cut(s)	290, 1011, 1108, 1876
NmuCI	GTSAC	1 cut(s)	35
NsiI	ATGCAT	1 cut(s)	1335
NspI	RCATGY	3 cut(s)	692, 1184, 1337
NspV	TTCGAA	1 cut(s)	715
PaeI	GCATGC	1 cut(s)	1337
PagI	TCATGA	3 cut(s)	513, 706, 1305
PceI	AGGCCT	1 cut(s)	780
PciSI	GCTCTTC	2 cut(s)	617, 630
PcsI	WCGNNNNNNNCGW	1 cut(s)	925
PctI	GAATGC	2 cut(s)	794, 1994
PdmI	GAANNNNTTC	1 cut(s)	1833
PfeI	GAWTC	6 cut(s)	957, 1090, 1585, 1627, 1724, 1805
PflMI	CCANNNNNTGG	1 cut(s)	1116
PfoI	TCCNGGA	2 cut(s)	582, 783
PkrI	GCNGC	2 cut(s)	303, 1186
PleI	GAGTC	4 cut(s)	268, 697, 1207, 1372
PpsI	GAGTC	4 cut(s)	268, 697, 1207, 1372
Psp124BI	GAGCTC	2 cut(s)	187, 372
Psp1406I	AACGTT	1 cut(s)	1653
Psp6I	CCWGG	3 cut(s)	783, 1759, 2046
PspFI	CCCAGC	1 cut(s)	863
PspGI	CCWGG	3 cut(s)	783, 1759, 2046
PspN4I	GGNNCC	4 cut(s)	290, 1011, 1108, 1876
PspPI	GGNCC	3 cut(s)	288, 883, 2050
PstNI	CAGNNNCTG	2 cut(s)	149, 1709
PsuI	RGATCY	2 cut(s)	1456, 1874
RsaI	GTAC	4 cut(s)	320, 407, 984, 1545
RsaNI	GTAC	4 cut(s)	319, 406, 983, 1544
RseI	CAYNNNNRTG	1 cut(s)	512
SacI	GAGCTC	2 cut(s)	187, 372
SapI	GCTCTTC	2 cut(s)	617, 630
SaqAI	TTAA	4 cut(s)	1019, 1443, 1506, 1800
SatI	GCNGC	2 cut(s)	302, 1185
Sau3AI	GATC	5 cut(s)	169, 195, 1156, 1456, 1874
Sau96I	GGNCC	3 cut(s)	288, 883, 2050
SchI	GAGTC	4 cut(s)	269, 697, 1208, 1372
ScrFI	CCNGG	4 cut(s)	584, 785, 1761, 2048
SduI	GDGCHC	4 cut(s)	187, 372, 1014, 1213
SexAI	ACCWGGT	1 cut(s)	2046
SfaNI	GCATC	5 cut(s)	687, 792, 1228, 1565, 1715
SfcI	CTRYAG	1 cut(s)	827
SfuI	TTCGAA	1 cut(s)	715
SinI	GGWCC	2 cut(s)	883, 2050
SmiMI	CAYNNNNRTG	1 cut(s)	512
SmlI	CTYRAG	2 cut(s)	224, 231
SmoI	CTYRAG	2 cut(s)	224, 231
SphI	GCATGC	1 cut(s)	1337
Sse9I	AATT	8 cut(s)	191, 711, 924, 1030, 1487, 1518, 1537, 1698
SseBI	AGGCCT	1 cut(s)	780
SsiI	CCGC	6 cut(s)	393, 558, 965, 1006, 1285, 1745
SspMI	CTAG	4 cut(s)	776, 1464, 1484, 2009
SstI	GAGCTC	2 cut(s)	187, 372
StuI	AGGCCT	1 cut(s)	780
StyD4I	CCNGG	4 cut(s)	582, 783, 1759, 2046
StyI	CCWWGG	4 cut(s)	363, 525, 1513, 1938
TaaI	ACNGT	5 cut(s)	502, 520, 914, 1895, 1926
TaiI	ACGT	2 cut(s)	725, 1656
TaqI	TCGA	2 cut(s)	715, 1974
TasI	AATT	8 cut(s)	191, 711, 924, 1030, 1487, 1518, 1537, 1698
TatI	WGTACW	1 cut(s)	318
TfiI	GAWTC	6 cut(s)	957, 1090, 1585, 1627, 1724, 1805
Tru1I	TTAA	4 cut(s)	1019, 1443, 1506, 1800
Tru9I	TTAA	4 cut(s)	1019, 1443, 1506, 1800
TscAI	CASTG	2 cut(s)	954, 1501
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	2 cut(s)	301, 1184
Tsp45I	GTSAC	1 cut(s)	35
TspGWI	ACGGA	6 cut(s)	23, 53, 393, 1115, 1241, 1385
TspRI	CASTG	2 cut(s)	954, 1501
Van91I	CCANNNNNTGG	1 cut(s)	1116
VpaK11BI	GGWCC	2 cut(s)	883, 2050
XapI	RAATTY	4 cut(s)	711, 1030, 1518, 1537
XbaI	TCTAGA	1 cut(s)	1463
XceI	RCATGY	3 cut(s)	692, 1184, 1337
XcmI	CCANNNNNNNNNTGG	1 cut(s)	860
XmiI	GTMKAC	1 cut(s)	931
XmnI	GAANNNNTTC	1 cut(s)	1833
XspI	CTAG	4 cut(s)	776, 1464, 1484, 2009
Zsp2I	ATGCAT	1 cut(s)	1335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.