Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004584

Physical Location & Seq

Genomic Coordinates Forward (+)

13400023 .. 13407710

Gene Structure 7688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011864

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3273 bp

ATGACATCTGATTCAGCGTCATTTAGAGAGGAACGGGACACATTTGGACCCATAAATGTTCCTTCAGACAAGTTATGGGGAGCGCAGACTCAAAGATCCTTGCAGAATTTCGATATAGGAGGCGAGCGTGAACGAATGCCCGAACCTATTATTCGGGCCTTTGGCGTCCTCAAAAAATGTGCTGCCAAGGTGAACATGGAGTATGGTCTTGATCAATCTATAGGGATCGCTATAATGGAAGCTGCCCAAGAAGTGGCTGAGGGAAAGCTAAACCAACATTTTCCACTTGTTGTTTGGCAAACTGGTAGTGGAACCCAAAGCAACATGAATGCCAATGAGGTCATTGCAAACAGAGCAGCCGAGATACTTGGCCATAAGCGCGGGGAGAAGTTTGTGCACCCAAATGACCATGTCAACAAATCACAATCTTCTAACGACACTTTCCCAACTGTCATGCACATTGCAACAGCAATGGAACTAAATTCAAGACTGATACCGAGTTTGAAAGTTTTACATGCTGCTTTAGATTCAAAGGCTAATGAATTCAAAGACATTGTTAAAATCGGACGTACTCACACGCAAGATGCAACACCTTTGACTCTTGGGCAAGAGTTTAGCGGCTATTCTACACAAGTGAAGTATGGAATCGATCGAGTCTTGGGCACTCTTCCCCGAATGTATCAGCTTGCACAGGGCGGTACTGCTGTTGGGACTGGATTGAACACGAAGAAGGGATTTGATGTAAAGATAGCTGCAGCGGTAGCTGAGGAAACAAAGTTGCCATTTGTTACAGCAGAAAACAAGTTTGAAGCCTTGGCGGCCCATGATGCTTTCGTGGAAACTAGTGGAGCCCTAAATACAGTTGGTACTTCTCTGATGAAGATTGCAAATGACATACGTTTCTTAGGAAGCGGTCCACGTTGTGGCCTTGGTGAACTTAATCTTCCAGAAAACGAGCCTGGAAGCAGCATTATGCCTGGAAAGGTTAATCCTACCCAGTGTGAGGCTCTCACAATGGTCTGTGCTCAGGTTATGGGTAATCATGTGGCCATTACAGTTGGCGGATCAAACGGTCACTTTGAACTTAACGTATTCAAACCGATGATGGCTAGTAATCTTCTACATTCTCTAAGGTTACTGGCTGATGCATCTGTCTCATTTGAAAAGAACTGCGTGAAAGGAATTCAAGCCAACAAGGAAAGAATTTCGAAGTTACTTCATGAGTCGCTAATGCTGGTGACCTCCTTGAATCCTGTGGTGCCACCGCACCCGGCTCCCCACCTAACCTCTGCTAGTGATCTTTCACCCTTCACTTTCTCCTATCAAGCTTCAAGCCTGGTTTTAGACAGTAGCTGCATAATGGAGTCATGTGATTGTGTTGAACCACAATGGCCCCCTGATGAACTTCTGGTGAAGTATCAGTACATCTCTGATGTGTTTATTGCGTTGGCGTATTTCTCAATTCCATTGGAGCTCATATACTTTGTGCAGAAATCCGCTTTCTTCCCATATAGATGGGTGCTTATGCAGTTTGGTGCTTTCATTGTGCTTTGCGGCGCAACCCATTTCATAAACGTGTGGACATTCTCTATGCACACGAAAACTGTTGCCATTGTGATGACTATTGCAAAGGTCTCTTGTGCTGTTGTATCGTGTGCAACGGCGCTGATGCTTGTTCACATTATTCCGGATTTGTTGTCTGTCAGGACCCGGGAGCTCTTTCTCAAGAACAGGGCCGAAGAGCTTGACAGGGAGATGGGCCGTATTCTAACTCAAGAAGAAACAGGAAGGCATGTTAGAATGCTGACACATGAAATTAGAAGCACACTTGACAGACACACTATACTGAAAACCACTCTTGTTGAGCTGGGAAGGACTTTAGGCCTTGAGGAATGCGCTTTGTGGATGCCGTGCAGGAGTGGTATGAACCTTCAACTTTCTCATACTCTCAACTATGAAGCACAAATTGGGTCTACTGTGCCATTTAGCCTTCCTATAGTTAGTGAAGTTTTCAAGAGCTCTCGAGCAATGCGTATACCATATACCTGCCCCTTGGCCCGGATCAGACCGCTCGTGGGAAAATATGTGCAACCTGAGGTTGTTGCTTTGCGTGTACCGCTGTTGAATCTTTCAAATTTCCAAATCAACGACTGGCCTGATGTCTCTGCGAAAAGCTATGCCATCATGGTTCTGATTCTACCAACAGATGGCACTAGAAAGTGGCGAGACCATGAACTTGAACTGGTGGATGTTGTTGCAGATCAGGTCGCTGTTGCTCTTTCACATGCTGCTATTCTTGAAGAGTCTATGCGAGCGAGTGATCAGCTCGTAGAGCAGAATGGTGCTTTAGATTCGGCCCGGAGAGAGGCAGAGCTGGCAATCCATGCTCGCAACGACTTCCTTGCTGTCCTGAACCATGAAATGAGGACACCAATGCATGCAATTATTGCGTTGTCTTCACTTCTTTTAGAAACAGAACTAACACTAGAACATAGGGTTATGATAGAATCGATACTAAAGAGTAGCAACCTTTTGGAAACTCTTATTAATGATGTTCTAGATCTTTCTAGACTTGAAGATGGCAGCCTAGACTTGGACATTGGAAAGTTTAACCTCCATGGAGTTTTCAGAGAGGCAATCGATTTGATAAAGCCTATTGCAACTGTGAAGAAGTTATCTATGACTTTAATTCTGGCCCCAGATGTGCCTGTGTGTGCTGTTGGAGATGAGAATCGGCTTATGCAAACTATTTTAAATGTTGCTGGTAATGCTGTCAAGTTTACAAAGGAGGGTTATATTTCAGTTATAGCATCTATTGCAAAACCAGATTCTTCAAGAGATTGGCGACCGCCTGAATTTTATCCAGCGTCAAGTGACAGCCATTTTTACCTACGAGTTCAGGTAAAAGATTCTGGCAGTGGTATTCTTCCACAAGATATTCCTCATATTTTCACCAAATTTGCTCAGCCCAGAAATGGATCCAATCGAGTAAATAATGGTGCAGGACTCGGACTTGCTATTTGCAAACGGTTTGTGAATACGATGGGAGGTCATATTTGGATCGAGAGTGAGGGCATTGACAAGGGGACTCTTGTTGTATTCATCGTCAAACTCGGGATATGCGACAATTGTGGTAATACAACAATAGCGCATCAAAAAGCACCCAAAGGGGAGGCAAATCATGGAAGTGCAGATCTCATTGGATACAAACCAGCTTTTAGAGATGGTTACGGTTTAGCTTCCACAAATCCGCGTTATCAAAGAAGTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0012505 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023051 GO:0023057 GO:0036211 GO:0042562 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051740 GO:0065007 GO:0070297 GO:0070298 GO:0071704 GO:0072328 GO:0140096 GO:1901564 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

GAF HATPase_c HisKA Response_reg

Protein Analysis

1091

Amino Acids

119.91

Weight (kDa)

6.33

Isoelectric Point (pI)

31.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lyase_1	PF00206	16 - 346	6.3e-114	Lyase
ETR1_N	PF25487	470 - 568	3.6e-37	Ethylene receptor 1-like, N-terminal domain
GAF	PF01590	611 - 760	2.7e-15	GAF domain
HisKA	PF00512	796 - 861	1.4e-16	His Kinase A (phospho-acceptor) domain
HATPase_c	PF02518	908 - 1038	1e-21	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40940
fragaria_vesca	FvH4_2g26120 FvH4_2g26120 FvH4_2g26120
malus_domestica	MD03G1292200.v1.1 MD06G1001100.v1.1 MD11G1306200.v1.1
prunus_persica	Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1
pyrus_communis	pycom03g23140 pycom11g26800
rosa_chinensis	RchiOBHm_Chr6g0294491
rosa_laevigata	RLG00000011864
rosa_roxburghii	Rroxscaffold_7G00173280
rosa_rugosa	Rorug06G0245200 Rorug06G0245300 Rorug06G0245400
rosa_samantha	Rh6AG357700 Rh6BG364600 Rh6CG371700 Rh6DG358500
rosa_wichuraiana	Rw6G031200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2054
AccB1I	GGYRCC	1 cut(s)	1258
AccB7I	CCANNNNNTGG	3 cut(s)	253, 923, 2207
AccBSI	CCGCTC	1 cut(s)	2071
AccI	GTMKAC	2 cut(s)	1973, 2035
AccII	CGCG	2 cut(s)	381, 3253
AccIII	TCCGGA	1 cut(s)	1687
AclWI	GGATC	7 cut(s)	90, 233, 1072, 2069, 2973, 2986, 3068
AcoI	YGGCCR	2 cut(s)	370, 1047
AcsI	RAATTY	8 cut(s)	106, 481, 542, 1182, 1203, 2134, 2855, 2957
AcuI	CTGAAG	1 cut(s)	48
AcyI	GRCGYC	1 cut(s)	165
AdeI	CACNNNGTG	1 cut(s)	923
AfaI	GTAC	5 cut(s)	571, 700, 868, 1424, 2115
AfiI	CCNNNNNNNGG	9 cut(s)	253, 923, 1003, 2058, 2075, 2207, 2365, 2593, 2975
AflIII	ACRYGT	1 cut(s)	1575
AhlI	ACTAGT	1 cut(s)	842
AjnI	CCWGG	3 cut(s)	958, 976, 1335
AjuI	GAANNNNNNNTTGG	2 cut(s)	1950, 1982
Alw21I	GWGCWC	5 cut(s)	399, 1027, 1476, 1719, 2021
Alw26I	GTCTC	4 cut(s)	1159, 1639, 2167, 2220
Alw44I	GTGCAC	1 cut(s)	395
AlwI	GGATC	7 cut(s)	90, 233, 1072, 2069, 2973, 2986, 3068
AlwNI	CAGNNNCTG	1 cut(s)	1353
Ama87I	CYCGRG	3 cut(s)	1710, 2022, 3113
Aor13HI	TCCGGA	1 cut(s)	1687
ApaLI	GTGCAC	1 cut(s)	395
ApoI	RAATTY	8 cut(s)	106, 481, 542, 1182, 1203, 2134, 2855, 2957
ArsI	GACNNNNNNTTYG	2 cut(s)	3003, 3035
AseI	ATTAAT	1 cut(s)	2547
AspLEI	GCGC	6 cut(s)	85, 381, 1559, 1666, 1898, 3151
AsuC2I	CCSGG	5 cut(s)	1271, 1711, 1712, 2059, 2359
AsuHPI	GGTGA	6 cut(s)	202, 944, 1249, 1296, 1423, 2944
AsuII	TTCGAA	1 cut(s)	1208
AvaI	CYCGRG	3 cut(s)	1710, 2022, 3113
AvaII	GGWCC	3 cut(s)	47, 914, 1707
AxyI	CCTNAGG	1 cut(s)	2094
BaeGI	GKGCMC	2 cut(s)	399, 665
BaeI	ACNNNNGTAYC	2 cut(s)	690, 723
BalI	TGGCCA	2 cut(s)	372, 1049
BamHI	GGATCC	1 cut(s)	2978
BanI	GGYRCC	1 cut(s)	1258
BanII	GRGCYC	4 cut(s)	853, 1476, 1719, 2021
BarI	GAAGNNNNNNTAC	2 cut(s)	1406, 1438
BauI	CACGAG	1 cut(s)	2072
BbsI	GAAGAC	1 cut(s)	2448
Bbv12I	GWGCWC	5 cut(s)	399, 1027, 1476, 1719, 2021
BbvCI	CCTCAGC	2 cut(s)	258, 765
BccI	CCATC	8 cut(s)	1099, 1509, 1750, 2189, 2201, 2573, 3037, 3218
BceAI	ACGGC	3 cut(s)	1677, 1746, 1894
BcgI	CGANNNNNNTGC	2 cut(s)	2384, 2418
BciT130I	CCWGG	3 cut(s)	960, 978, 1337
BciVI	GTATCC	1 cut(s)	3197
BclI	TGATCA	2 cut(s)	211, 2320
BcnI	CCSGG	5 cut(s)	1271, 1711, 1712, 2059, 2359
BcoDI	GTCTC	4 cut(s)	1159, 1639, 2167, 2220
BcuI	ACTAGT	1 cut(s)	842
BfaI	CTAG	8 cut(s)	843, 1110, 1293, 2214, 2486, 2558, 2568, 2588
BfmI	CTRYAG	3 cut(s)	219, 753, 1995
BfoI	RGCGCY	1 cut(s)	1667
BfuAI	ACCTGC	1 cut(s)	2054
BfuI	GTATCC	1 cut(s)	3197
BglI	GCCNNNNNGGC	1 cut(s)	818
BglII	AGATCT	2 cut(s)	2560, 3193
BlpI	GCTNAGC	1 cut(s)	2964
Bme1390I	CCNGG	8 cut(s)	960, 978, 1271, 1337, 1711, 1712, 2059, 2359
Bme18I	GGWCC	3 cut(s)	47, 914, 1707
BmeT110I	CYCGRG	3 cut(s)	1710, 2022, 3113
BmiI	GGNNCC	9 cut(s)	49, 313, 850, 1260, 1275, 1394, 1709, 2697, 2980
BmrFI	CCNGG	8 cut(s)	960, 978, 1271, 1337, 1711, 1712, 2059, 2359
BmrI	ACTGGG	1 cut(s)	991
BmsI	GCATC	8 cut(s)	574, 817, 1135, 1157, 1659, 1896, 2819, 3160
BmuI	ACTGGG	1 cut(s)	991
BpiI	GAAGAC	1 cut(s)	2448
Bpu10I	CCTNAGC	3 cut(s)	258, 765, 1026
Bpu1102I	GCTNAGC	1 cut(s)	2964
Bpu14I	TTCGAA	1 cut(s)	1208
BpuEI	CTTGAG	3 cut(s)	1709, 1758, 1907
BpuMI	CCSGG	5 cut(s)	1271, 1711, 1712, 2059, 2359
Bsa29I	ATCGAT	3 cut(s)	648, 2510, 2640
BsaBI	GATNNNNATC	1 cut(s)	2730
BsaHI	GRCGYC	1 cut(s)	165
BsaI	GGTCTC	2 cut(s)	1639, 2220
BsaJI	CCNNGG	6 cut(s)	186, 813, 928, 1710, 2052, 2617
BsaWI	WCCGGW	1 cut(s)	1687
Bsc4I	CCNNNNNNNGG	9 cut(s)	253, 923, 1003, 2058, 2075, 2207, 2365, 2593, 2975
Bse1I	ACTGG	6 cut(s)	307, 718, 997, 1143, 2156, 2247
Bse21I	CCTNAGG	1 cut(s)	2094
Bse3DI	GCAATG	4 cut(s)	342, 459, 477, 2034
Bse8I	GATNNNNATC	1 cut(s)	2730
BseAI	TCCGGA	1 cut(s)	1687
BseBI	CCWGG	3 cut(s)	960, 978, 1337
BseCI	ATCGAT	3 cut(s)	648, 2510, 2640
BseDI	CCNNGG	6 cut(s)	186, 813, 928, 1710, 2052, 2617
BseGI	GGATG	2 cut(s)	1911, 2254
BseJI	GATNNNNATC	1 cut(s)	2730
BseLI	CCNNNNNNNGG	9 cut(s)	253, 923, 1003, 2058, 2075, 2207, 2365, 2593, 2975
BseMI	GCAATG	4 cut(s)	342, 459, 477, 2034
BseMII	CTCAG	5 cut(s)	249, 756, 1040, 2085, 2978
BseNI	ACTGG	6 cut(s)	307, 718, 997, 1143, 2156, 2247
BseSI	GKGCMC	2 cut(s)	399, 665
BseYI	CCCAGC	1 cut(s)	1867
BsgI	GTGCAG	4 cut(s)	1508, 1933, 3021, 3210
Bsh1236I	CGCG	2 cut(s)	381, 3253
Bsh1285I	CGRYCG	2 cut(s)	652, 2849
BshNI	GGYRCC	1 cut(s)	1258
BshVI	ATCGAT	3 cut(s)	648, 2510, 2640
BsiEI	CGRYCG	2 cut(s)	652, 2849
BsiHKAI	GWGCWC	5 cut(s)	399, 1027, 1476, 1719, 2021
BsiHKCI	CYCGRG	3 cut(s)	1710, 2022, 3113
BsiSI	CCGG	5 cut(s)	1271, 1688, 1711, 2059, 2359
BslFI	GGGAC	3 cut(s)	50, 724, 3100
BslI	CCNNNNNNNGG	9 cut(s)	253, 923, 1003, 2058, 2075, 2207, 2365, 2593, 2975
BsmAI	GTCTC	4 cut(s)	1159, 1639, 2167, 2220
BsmFI	GGGAC	3 cut(s)	50, 724, 3100
BsmI	GAATGC	4 cut(s)	141, 334, 1806, 1898
Bso31I	GGTCTC	2 cut(s)	1639, 2220
BsoBI	CYCGRG	3 cut(s)	1710, 2022, 3113
Bsp119I	TTCGAA	1 cut(s)	1208
Bsp1286I	GDGCHC	7 cut(s)	399, 665, 853, 1027, 1476, 1719, 2021
Bsp13I	TCCGGA	1 cut(s)	1687
Bsp1720I	GCTNAGC	1 cut(s)	2964
Bsp19I	CCATGG	1 cut(s)	2617
BspCNI	CTCAG	5 cut(s)	250, 757, 1039, 2086, 2977
BspDI	ATCGAT	3 cut(s)	648, 2510, 2640
BspEI	TCCGGA	1 cut(s)	1687
BspFNI	CGCG	2 cut(s)	381, 3253
BspHI	TCATGA	1 cut(s)	1219
BspLI	GGNNCC	9 cut(s)	49, 313, 850, 1260, 1275, 1394, 1709, 2697, 2980
BspMAI	CTGCAG	1 cut(s)	757
BspMI	ACCTGC	1 cut(s)	2054
BspPI	GGATC	7 cut(s)	90, 233, 1072, 2069, 2973, 2986, 3068
BspQI	GCTCTTC	1 cut(s)	1734
BspT104I	TTCGAA	1 cut(s)	1208
BspT107I	GGYRCC	1 cut(s)	1258
BspTNI	GGTCTC	2 cut(s)	1639, 2220
BsrBI	CCGCTC	1 cut(s)	2071
BsrDI	GCAATG	4 cut(s)	342, 459, 477, 2034
BsrI	ACTGG	6 cut(s)	307, 718, 997, 1143, 2156, 2247
BssECI	CCNNGG	6 cut(s)	186, 813, 928, 1710, 2052, 2617
BssNAI	GTATAC	1 cut(s)	2036
BssNI	GRCGYC	1 cut(s)	165
BssSI	CACGAG	1 cut(s)	2072
BssT1I	CCWWGG	5 cut(s)	186, 813, 928, 2052, 2617
Bst1107I	GTATAC	1 cut(s)	2036
Bst2BI	CACGAG	1 cut(s)	2072
Bst2UI	CCWGG	3 cut(s)	960, 978, 1337
Bst6I	CTCTTC	3 cut(s)	672, 1734, 2295
BstACI	GRCGYC	1 cut(s)	165
BstAPI	GCANNNNNTGC	3 cut(s)	2384, 2447, 2816
BstBI	TTCGAA	1 cut(s)	1208
BstC8I	GCNNGC	6 cut(s)	125, 687, 2313, 2376, 2389, 2439
BstDEI	CTNAG	7 cut(s)	258, 765, 904, 1026, 1130, 2094, 2964
BstDSI	CCRYGG	1 cut(s)	2617
BstEII	GGTNACC	1 cut(s)	1237
BstF5I	GGATG	2 cut(s)	1911, 2254
BstFNI	CGCG	2 cut(s)	381, 3253
BstH2I	RGCGCY	1 cut(s)	1667
BstHHI	GCGC	6 cut(s)	85, 381, 1559, 1666, 1898, 3151
BstMAI	GTCTC	4 cut(s)	1159, 1639, 2167, 2220
BstMCI	CGRYCG	2 cut(s)	652, 2849
BstNI	CCWGG	3 cut(s)	960, 978, 1337
BstNSI	RCATGY	4 cut(s)	518, 1796, 2288, 2441
BstPI	GGTNACC	1 cut(s)	1237
BstSCI	CCNGG	8 cut(s)	958, 976, 1269, 1335, 1709, 1710, 2057, 2357
BstSFI	CTRYAG	3 cut(s)	219, 753, 1995
BstSLI	GKGCMC	2 cut(s)	399, 665
BstUI	CGCG	2 cut(s)	381, 3253
BstV2I	GAAGAC	1 cut(s)	2448
BstX2I	RGATCY	4 cut(s)	95, 2560, 2978, 3193
BstXI	CCANNNNNNTGG	1 cut(s)	1515
BstYI	RGATCY	4 cut(s)	95, 2560, 2978, 3193
BstZ17I	GTATAC	1 cut(s)	2036
Bsu15I	ATCGAT	3 cut(s)	648, 2510, 2640
Bsu36I	CCTNAGG	1 cut(s)	2094
BsuI	GTATCC	1 cut(s)	3197
BsuTUI	ATCGAT	3 cut(s)	648, 2510, 2640
BtgI	CCRYGG	1 cut(s)	2617
BtsCI	GGATG	2 cut(s)	1911, 2254
BtsI	GCAGTG	1 cut(s)	2923
BtsIMutI	CAGTG	2 cut(s)	1004, 2923
BveI	ACCTGC	1 cut(s)	2054
Cac8I	GCNNGC	6 cut(s)	125, 687, 2313, 2376, 2389, 2439
CaiI	CAGNNNCTG	1 cut(s)	1353
CciI	TCATGA	1 cut(s)	1219
CfoI	GCGC	6 cut(s)	85, 381, 1559, 1666, 1898, 3151
Cfr9I	CCCGGG	1 cut(s)	1710
ClaI	ATCGAT	3 cut(s)	648, 2510, 2640
CseI	GACGC	3 cut(s)	6, 154, 2856
Csp6I	GTAC	5 cut(s)	570, 699, 867, 1423, 2114
CspCI	CAANNNNNGTGG	2 cut(s)	1843, 1878
CviQI	GTAC	5 cut(s)	570, 699, 867, 1423, 2114
DdeI	CTNAG	7 cut(s)	258, 765, 904, 1026, 1130, 2094, 2964
DraI	TTTAAA	1 cut(s)	2754
DraIII	CACNNNGTG	1 cut(s)	923
EaeI	YGGCCR	2 cut(s)	370, 1047
Eam1104I	CTCTTC	3 cut(s)	672, 1734, 2295
EarI	CTCTTC	3 cut(s)	672, 1734, 2295
EciI	GGCGGA	1 cut(s)	1077
Ecl136II	GAGCTC	3 cut(s)	1474, 1717, 2019
Eco130I	CCWWGG	5 cut(s)	186, 813, 928, 2052, 2617
Eco147I	AGGCCT	1 cut(s)	1884
Eco24I	GRGCYC	4 cut(s)	853, 1476, 1719, 2021
Eco31I	GGTCTC	2 cut(s)	1639, 2220
Eco47I	GGWCC	3 cut(s)	47, 914, 1707
Eco53kI	GAGCTC	3 cut(s)	1474, 1717, 2019
Eco57I	CTGAAG	1 cut(s)	48
Eco81I	CCTNAGG	1 cut(s)	2094
Eco88I	CYCGRG	3 cut(s)	1710, 2022, 3113
Eco91I	GGTNACC	1 cut(s)	1237
EcoICRI	GAGCTC	3 cut(s)	1474, 1717, 2019
EcoO109I	RGGNCCY	1 cut(s)	1707
EcoO65I	GGTNACC	1 cut(s)	1237
EcoRI	GAATTC	2 cut(s)	542, 1182
EcoRII	CCWGG	3 cut(s)	958, 976, 1335
EcoT14I	CCWWGG	5 cut(s)	186, 813, 928, 2052, 2617
EcoT22I	ATGCAT	2 cut(s)	1150, 2439
EcoT38I	GRGCYC	4 cut(s)	853, 1476, 1719, 2021
ErhI	CCWWGG	5 cut(s)	186, 813, 928, 2052, 2617
FaqI	GGGAC	3 cut(s)	50, 724, 3100
FauI	CCCGC	1 cut(s)	374
FbaI	TGATCA	2 cut(s)	211, 2320
FblI	GTMKAC	2 cut(s)	1973, 2035
FokI	GGATG	2 cut(s)	1918, 2261
FriOI	GRGCYC	4 cut(s)	853, 1476, 1719, 2021
FspBI	CTAG	8 cut(s)	843, 1110, 1293, 2214, 2486, 2558, 2568, 2588
GlaI	GCGC	6 cut(s)	84, 380, 1558, 1665, 1897, 3150
GsaI	CCCAGC	1 cut(s)	1871
HaeII	RGCGCY	1 cut(s)	1667
HapII	CCGG	5 cut(s)	1271, 1688, 1711, 2059, 2359
HgaI	GACGC	3 cut(s)	6, 154, 2856
HhaI	GCGC	6 cut(s)	85, 381, 1559, 1666, 1898, 3151
Hin1I	GRCGYC	1 cut(s)	165
Hin6I	GCGC	6 cut(s)	83, 379, 1557, 1664, 1896, 3149
HinP1I	GCGC	6 cut(s)	83, 379, 1557, 1664, 1896, 3149
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HindIII	AAGCTT	1 cut(s)	1326
HpaII	CCGG	5 cut(s)	1271, 1688, 1711, 2059, 2359
HphI	GGTGA	6 cut(s)	202, 944, 1249, 1296, 1423, 2944
HpyAV	CCTTC	7 cut(s)	72, 724, 1318, 1782, 1866, 1940, 2000
HpyCH4IV	ACGT	5 cut(s)	568, 898, 919, 1089, 1575
HpyF3I	CTNAG	7 cut(s)	258, 765, 904, 1026, 1130, 2094, 2964
HpySE526I	ACGT	5 cut(s)	568, 898, 919, 1089, 1575
Hsp92I	GRCGYC	1 cut(s)	165
HspAI	GCGC	6 cut(s)	83, 379, 1557, 1664, 1896, 3149
Kpn2I	TCCGGA	1 cut(s)	1687
Ksp22I	TGATCA	2 cut(s)	211, 2320
LguI	GCTCTTC	1 cut(s)	1734
LmnI	GCTCC	5 cut(s)	80, 848, 1279, 1471, 1714
LweI	GCATC	8 cut(s)	574, 817, 1135, 1157, 1659, 1896, 2819, 3160
MaeI	CTAG	8 cut(s)	843, 1110, 1293, 2214, 2486, 2558, 2568, 2588
MaeII	ACGT	5 cut(s)	568, 898, 919, 1089, 1575
MaeIII	GTNAC	7 cut(s)	787, 1073, 1134, 1212, 1237, 2873, 3227
MbiI	CCGCTC	1 cut(s)	2071
MfeI	CAATTG	1 cut(s)	3127
MflI	RGATCY	4 cut(s)	95, 2560, 2978, 3193
MhlI	GDGCHC	7 cut(s)	399, 665, 853, 1027, 1476, 1719, 2021
MlsI	TGGCCA	2 cut(s)	372, 1049
MluNI	TGGCCA	2 cut(s)	372, 1049
MlyI	GAGTC	8 cut(s)	82, 592, 663, 1232, 1373, 2312, 3000, 3082
MmeI	TCCRAC	1 cut(s)	2701
Mox20I	TGGCCA	2 cut(s)	372, 1049
Mph1103I	ATGCAT	2 cut(s)	1150, 2439
MroI	TCCGGA	1 cut(s)	1687
MscI	TGGCCA	2 cut(s)	372, 1049
MseI	TTAA	8 cut(s)	558, 939, 987, 1086, 2547, 2610, 2687, 2753
MslI	CAYNNNNRTG	5 cut(s)	402, 1513, 1574, 1616, 3186
Msp20I	TGGCCA	2 cut(s)	372, 1049
MspA1I	CMGCKG	2 cut(s)	758, 2119
MspI	CCGG	5 cut(s)	1271, 1688, 1711, 2059, 2359
MspR9I	CCNGG	8 cut(s)	960, 978, 1271, 1337, 1711, 1712, 2059, 2359
MunI	CAATTG	1 cut(s)	3127
Mva1269I	GAATGC	4 cut(s)	141, 334, 1806, 1898
MvaI	CCWGG	3 cut(s)	960, 978, 1337
MvnI	CGCG	2 cut(s)	381, 3253
NciI	CCSGG	5 cut(s)	1271, 1711, 1712, 2059, 2359
NcoI	CCATGG	1 cut(s)	2617
NlaIV	GGNNCC	9 cut(s)	49, 313, 850, 1260, 1275, 1394, 1709, 2697, 2980
NmeAIII	GCCGAG	1 cut(s)	385
NmuCI	GTSAC	3 cut(s)	1073, 1237, 2873
NsiI	ATGCAT	2 cut(s)	1150, 2439
NspI	RCATGY	4 cut(s)	518, 1796, 2288, 2441
NspV	TTCGAA	1 cut(s)	1208
PaeI	GCATGC	1 cut(s)	2441
PaeR7I	CTCGAG	1 cut(s)	2022
PagI	TCATGA	1 cut(s)	1219
PceI	AGGCCT	1 cut(s)	1884
PciSI	GCTCTTC	1 cut(s)	1734
PcsI	WCGNNNNNNNCGW	2 cut(s)	2029, 3120
PctI	GAATGC	4 cut(s)	141, 334, 1806, 1898
PflFI	GACNNNGTC	1 cut(s)	410
PflMI	CCANNNNNTGG	3 cut(s)	253, 923, 2207
Ple19I	CGATCG	1 cut(s)	652
PleI	GAGTC	8 cut(s)	82, 592, 662, 1231, 1372, 2311, 3000, 3082
PpsI	GAGTC	8 cut(s)	82, 592, 662, 1231, 1372, 2311, 3000, 3082
PpuMI	RGGWCCY	1 cut(s)	1707
PshBI	ATTAAT	1 cut(s)	2547
Psp124BI	GAGCTC	3 cut(s)	1476, 1719, 2021
Psp5II	RGGWCCY	1 cut(s)	1707
Psp6I	CCWGG	3 cut(s)	958, 976, 1335
PspEI	GGTNACC	1 cut(s)	1237
PspFI	CCCAGC	1 cut(s)	1867
PspGI	CCWGG	3 cut(s)	958, 976, 1335
PspN4I	GGNNCC	9 cut(s)	49, 313, 850, 1260, 1275, 1394, 1709, 2697, 2980
PspPPI	RGGWCCY	1 cut(s)	1707
PstI	CTGCAG	1 cut(s)	757
PstNI	CAGNNNCTG	1 cut(s)	1353
PsuI	RGATCY	4 cut(s)	95, 2560, 2978, 3193
PsyI	GACNNNGTC	1 cut(s)	410
PvuI	CGATCG	1 cut(s)	652
RsaI	GTAC	5 cut(s)	571, 700, 868, 1424, 2115
RsaNI	GTAC	5 cut(s)	570, 699, 867, 1423, 2114
RseI	CAYNNNNRTG	5 cut(s)	402, 1513, 1574, 1616, 3186
SacI	GAGCTC	3 cut(s)	1476, 1719, 2021
SapI	GCTCTTC	1 cut(s)	1734
SaqAI	TTAA	8 cut(s)	558, 939, 987, 1086, 2547, 2610, 2687, 2753
SchI	GAGTC	8 cut(s)	82, 592, 663, 1232, 1373, 2312, 3000, 3082
ScrFI	CCNGG	8 cut(s)	960, 978, 1271, 1337, 1711, 1712, 2059, 2359
SduI	GDGCHC	7 cut(s)	399, 665, 853, 1027, 1476, 1719, 2021
SfaNI	GCATC	8 cut(s)	574, 817, 1135, 1157, 1659, 1896, 2819, 3160
SfcI	CTRYAG	3 cut(s)	219, 753, 1995
Sfr274I	CTCGAG	1 cut(s)	2022
SfuI	TTCGAA	1 cut(s)	1208
SinI	GGWCC	3 cut(s)	47, 914, 1707
SlaI	CTCGAG	1 cut(s)	2022
SmaI	CCCGGG	1 cut(s)	1712
SmiMI	CAYNNNNRTG	5 cut(s)	402, 1513, 1574, 1616, 3186
SmlI	CTYRAG	4 cut(s)	1724, 1773, 1886, 2022
SmoI	CTYRAG	4 cut(s)	1724, 1773, 1886, 2022
SpeI	ACTAGT	1 cut(s)	842
SphI	GCATGC	1 cut(s)	2441
SseBI	AGGCCT	1 cut(s)	1884
SspMI	CTAG	8 cut(s)	843, 1110, 1293, 2214, 2486, 2558, 2568, 2588
SstI	GAGCTC	3 cut(s)	1476, 1719, 2021
StuI	AGGCCT	1 cut(s)	1884
StyD4I	CCNGG	8 cut(s)	958, 976, 1269, 1335, 1709, 1710, 2057, 2357
StyI	CCWWGG	5 cut(s)	186, 813, 928, 2052, 2617
TaiI	ACGT	5 cut(s)	571, 901, 922, 1092, 1578
TaqI	TCGA	9 cut(s)	111, 648, 652, 1208, 2023, 2510, 2640, 2986, 3063
TatI	WGTACW	1 cut(s)	1422
TauI	GCSGC	3 cut(s)	621, 821, 1557
Tru1I	TTAA	8 cut(s)	558, 939, 987, 1086, 2547, 2610, 2687, 2753
Tru9I	TTAA	8 cut(s)	558, 939, 987, 1086, 2547, 2610, 2687, 2753
TscAI	CASTG	2 cut(s)	1004, 2923
TseFI	GTSAC	3 cut(s)	1073, 1237, 2873
Tsp45I	GTSAC	3 cut(s)	1073, 1237, 2873
TspMI	CCCGGG	1 cut(s)	1710
TspRI	CASTG	2 cut(s)	1004, 2923
Tth111I	GACNNNGTC	1 cut(s)	410
Van91I	CCANNNNNTGG	3 cut(s)	253, 923, 2207
VneI	GTGCAC	1 cut(s)	395
VpaK11BI	GGWCC	3 cut(s)	47, 914, 1707
VspI	ATTAAT	1 cut(s)	2547
XapI	RAATTY	8 cut(s)	106, 481, 542, 1182, 1203, 2134, 2855, 2957
XbaI	TCTAGA	2 cut(s)	2557, 2567
XceI	RCATGY	4 cut(s)	518, 1796, 2288, 2441
XcmI	CCANNNNNNNNNTGG	2 cut(s)	193, 291
XhoI	CTCGAG	1 cut(s)	2022
XmaI	CCCGGG	1 cut(s)	1710
XmiI	GTMKAC	2 cut(s)	1973, 2035
XspI	CTAG	8 cut(s)	843, 1110, 1293, 2214, 2486, 2558, 2568, 2588
Zsp2I	ATGCAT	2 cut(s)	1150, 2439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.