Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004584

Physical Location & Seq

Genomic Coordinates Reverse (-)

39162145 .. 39165796

Gene Structure 3652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0245400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGAAAGAAGACTAGTAGCTGATGTACCTGATGAAAATAAACTTTGGCAACTGGTAGAGATTGTTGATCCTCTTCACTGTCTAGTGGTTACGATGCCGCCGTATAGTAAAGAACCTGCTAATAAGGTAATAACAACTTTCATGTCACCTGCACTGGCCTCAACCTACCTGGCATTTCATCCTTTGAACAGCAACATCATAACGATTGTAACAGAAAATTCAATCATTTACATTTACTATCTTAGAGTTGATGAGGTGATCAGACCAAAATTCAAGTGCCATCAGAAACACATTCCTGGATTTGCATTTTCTGTCAACCTTAAAGTCATGGTTTCATCAGAGGCTGATGCTCAAGCTCAACTACGCTTTTGGAACATGGAAACCTGGGATAAGAGGAAATTAGTTAGGATTCAACTGCCAACTGGAAAGGCGCCTACTGGTGATACTCAAGTGCAATTCTACTCTGATCAAATCCTGTTGTTGGTATTGGTTAAGACTCAACCAGCACTATATGATGGTGCCAAAACAGAATGCATTCAGCAGTGGATGCCACGAGATGTGCTGCCTGCACCGATAACATGTGCAGCATATTCCCCAAATAATCAACTCTATGGGGCTTTATCTGATAGCAATGTTGGAGTATTTGATACTGACAGTCTGAAACTTAGATGTCGTATAGCCATGTCAGTGTACTTTGTAGAAGCATCCCGCAACAGGTTCAAGGTTCCTCAACCTGGTTCAAACGCTGGGATTGGTGCTGTGCTAGTGACTGCTCAGGAAGTGGAAGCTCATAGTGAAAAGGGTCTGCTTGTTGGAGTGGTTGCAGAGAGTGATGCTACTGAGGACCCCGTTTTTCCTGGAGAGCGCATGAGCAAGATGAAGGACGCAGCTGGGGTATCTCTCAGAGTATTTTTGGCGACACCAGGAGGAAGATTTTTACTGTTGCTGAGACTGAGCTCAACAAAACTGCTGCTGCTGCTGATCTCCAAGGCAGTTGAATACACAACACTAGTGATTTACACTACTGCTTCCATGATCCATCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0012505 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023051 GO:0023057 GO:0036211 GO:0042562 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051740 GO:0065007 GO:0070297 GO:0070298 GO:0071704 GO:0072328 GO:0140096 GO:1901564 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

GAF HATPase_c HisKA Response_reg

Protein Analysis

348

Amino Acids

38.74

Weight (kDa)

8.17

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40940
fragaria_vesca	FvH4_2g26120 FvH4_2g26120 FvH4_2g26120
malus_domestica	MD03G1292200.v1.1 MD06G1001100.v1.1 MD11G1306200.v1.1
prunus_persica	Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1
pyrus_communis	pycom03g23140 pycom11g26800
rosa_chinensis	RchiOBHm_Chr6g0294491
rosa_laevigata	RLG00000011864
rosa_roxburghii	Rroxscaffold_7G00173280
rosa_rugosa	Rorug06G0245200 Rorug06G0245300 Rorug06G0245400
rosa_samantha	Rh6AG357700 Rh6BG364600 Rh6CG371700 Rh6DG358500
rosa_wichuraiana	Rw6G031200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	157
Acc36I	ACCTGC	2 cut(s)	124, 157
AccB1I	GGYRCC	2 cut(s)	430, 518
AciI	CCGC	2 cut(s)	98, 709
AclWI	GGATC	2 cut(s)	62, 1030
AcsI	RAATTY	2 cut(s)	217, 269
AcyI	GRCGYC	1 cut(s)	431
AfaI	GTAC	2 cut(s)	27, 692
AfiI	CCNNNNNNNGG	3 cut(s)	481, 714, 734
AflIII	ACRYGT	1 cut(s)	578
AgsI	TTSAA	7 cut(s)	187, 222, 274, 413, 721, 741, 998
AhlI	ACTAGT	2 cut(s)	13, 1009
AjnI	CCWGG	6 cut(s)	168, 295, 383, 733, 856, 922
AluBI	AGCT	5 cut(s)	20, 356, 788, 890, 957
AluI	AGCT	5 cut(s)	20, 356, 788, 890, 957
Alw21I	GWGCWC	1 cut(s)	959
Alw26I	GTCTC	1 cut(s)	943
AlwI	GGATC	2 cut(s)	62, 1030
AlwNI	CAGNNNCTG	1 cut(s)	344
AoxI	GGCC	1 cut(s)	156
ApeKI	GCWGC	6 cut(s)	562, 584, 887, 970, 973, 976
ApoI	RAATTY	2 cut(s)	217, 269
Asp700I	GAANNNNTTC	1 cut(s)	534
AspLEI	GCGC	2 cut(s)	433, 867
AspS9I	GGNCC	1 cut(s)	844
AsuHPI	GGTGA	3 cut(s)	138, 268, 452
AvaII	GGWCC	1 cut(s)	844
BaeI	ACNNNNGTAYC	2 cut(s)	435, 468
BanI	GGYRCC	2 cut(s)	430, 518
BanII	GRGCYC	1 cut(s)	959
BauI	CACGAG	1 cut(s)	552
BbsI	GAAGAC	1 cut(s)	16
Bbv12I	GWGCWC	1 cut(s)	959
BbvI	GCAGC	6 cut(s)	549, 596, 899, 957, 960, 963
BccI	CCATC	2 cut(s)	288, 509
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	6 cut(s)	170, 297, 385, 735, 858, 924
BclI	TGATCA	2 cut(s)	258, 466
BcoDI	GTCTC	1 cut(s)	943
BcuI	ACTAGT	2 cut(s)	13, 1009
BfaI	CTAG	4 cut(s)	14, 83, 764, 1010
BfoI	RGCGCY	1 cut(s)	434
BfuAI	ACCTGC	2 cut(s)	124, 157
BisI	GCNGC	7 cut(s)	98, 563, 585, 888, 971, 974, 977
BlsI	GCNGC	7 cut(s)	99, 564, 586, 889, 972, 975, 978
Bme1390I	CCNGG	6 cut(s)	170, 297, 385, 735, 858, 924
Bme18I	GGWCC	1 cut(s)	844
BmgT120I	GGNCC	1 cut(s)	844
BmiI	GGNNCC	4 cut(s)	432, 520, 726, 846
BmrFI	CCNGG	6 cut(s)	170, 297, 385, 735, 858, 924
BmsI	GCATC	5 cut(s)	84, 337, 537, 713, 823
BpiI	GAAGAC	1 cut(s)	16
BpmI	CTGGAG	1 cut(s)	879
Bpu10I	CCTNAGC	1 cut(s)	774
BpuEI	CTTGAG	2 cut(s)	336, 432
BsaHI	GRCGYC	1 cut(s)	431
BsaJI	CCNNGG	2 cut(s)	384, 987
Bsc4I	CCNNNNNNNGG	3 cut(s)	481, 714, 734
Bse1I	ACTGG	4 cut(s)	57, 159, 427, 442
Bse3DI	GCAATG	1 cut(s)	637
BseBI	CCWGG	6 cut(s)	170, 297, 385, 735, 858, 924
BseDI	CCNNGG	2 cut(s)	384, 987
BseGI	GGATG	3 cut(s)	178, 552, 704
BseLI	CCNNNNNNNGG	3 cut(s)	481, 714, 734
BseMI	GCAATG	1 cut(s)	637
BseMII	CTCAG	5 cut(s)	788, 831, 916, 938, 944
BseNI	ACTGG	4 cut(s)	57, 159, 427, 442
BseXI	GCAGC	6 cut(s)	549, 596, 899, 957, 960, 963
BseYI	CCCAGC	2 cut(s)	746, 890
BsgI	GTGCAG	3 cut(s)	135, 552, 603
BshFI	GGCC	1 cut(s)	158
BshNI	GGYRCC	2 cut(s)	430, 518
BsiHKAI	GWGCWC	1 cut(s)	959
BslI	CCNNNNNNNGG	3 cut(s)	481, 714, 734
BsmAI	GTCTC	1 cut(s)	943
BsmI	GAATGC	2 cut(s)	534, 536
BsnI	GGCC	1 cut(s)	158
Bsp1286I	GDGCHC	1 cut(s)	959
Bsp143I	GATC	5 cut(s)	67, 258, 466, 981, 1035
BspACI	CCGC	2 cut(s)	98, 709
BspANI	GGCC	1 cut(s)	158
BspCNI	CTCAG	5 cut(s)	787, 832, 915, 939, 945
BspLI	GGNNCC	4 cut(s)	432, 520, 726, 846
BspMI	ACCTGC	2 cut(s)	124, 157
BspPI	GGATC	2 cut(s)	62, 1030
BspT107I	GGYRCC	2 cut(s)	430, 518
BsrDI	GCAATG	1 cut(s)	637
BsrI	ACTGG	4 cut(s)	57, 159, 427, 442
BssECI	CCNNGG	2 cut(s)	384, 987
BssMI	GATC	5 cut(s)	67, 258, 466, 981, 1035
BssNI	GRCGYC	1 cut(s)	431
BssSI	CACGAG	1 cut(s)	552
BssT1I	CCWWGG	1 cut(s)	987
Bst2BI	CACGAG	1 cut(s)	552
Bst2UI	CCWGG	6 cut(s)	170, 297, 385, 735, 858, 924
Bst4CI	ACNGT	3 cut(s)	80, 656, 942
Bst6I	CTCTTC	1 cut(s)	78
BstACI	GRCGYC	1 cut(s)	431
BstAPI	GCANNNNNTGC	1 cut(s)	547
BstC8I	GCNNGC	1 cut(s)	567
BstDEI	CTNAG	7 cut(s)	242, 665, 774, 840, 902, 947, 953
BstF5I	GGATG	3 cut(s)	178, 552, 704
BstH2I	RGCGCY	1 cut(s)	434
BstHHI	GCGC	2 cut(s)	433, 867
BstKTI	GATC	5 cut(s)	70, 261, 469, 984, 1038
BstMAI	GTCTC	1 cut(s)	943
BstMBI	GATC	5 cut(s)	67, 258, 466, 981, 1035
BstMWI	GCNNNNNNNGC	2 cut(s)	547, 976
BstNI	CCWGG	6 cut(s)	170, 297, 385, 735, 858, 924
BstNSI	RCATGY	1 cut(s)	582
BstSCI	CCNGG	6 cut(s)	168, 295, 383, 733, 856, 922
BstV1I	GCAGC	6 cut(s)	549, 596, 899, 957, 960, 963
BstV2I	GAAGAC	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	158
BtsCI	GGATG	3 cut(s)	178, 552, 704
BtsI	GCAGTG	1 cut(s)	548
BtsIMutI	CAGTG	4 cut(s)	76, 152, 548, 693
BveI	ACCTGC	2 cut(s)	124, 157
Cac8I	GCNNGC	1 cut(s)	567
CaiI	CAGNNNCTG	1 cut(s)	344
CfoI	GCGC	2 cut(s)	433, 867
Cfr13I	GGNCC	1 cut(s)	844
CseI	GACGC	1 cut(s)	893
CsiI	ACCWGGT	1 cut(s)	733
Csp6I	GTAC	2 cut(s)	26, 691
CviAII	CATG	7 cut(s)	142, 328, 376, 579, 682, 868, 1033
CviJI	RGCY	9 cut(s)	20, 158, 344, 356, 617, 680, 788, 890, 957
CviKI_1	RGCY	9 cut(s)	20, 158, 344, 356, 617, 680, 788, 890, 957
CviQI	GTAC	2 cut(s)	26, 691
DdeI	CTNAG	7 cut(s)	242, 665, 774, 840, 902, 947, 953
DinI	GGCGCC	1 cut(s)	432
DpnI	GATC	5 cut(s)	69, 260, 468, 983, 1037
DpnII	GATC	5 cut(s)	67, 258, 466, 981, 1035
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Ecl136II	GAGCTC	1 cut(s)	957
Eco130I	CCWWGG	1 cut(s)	987
Eco24I	GRGCYC	1 cut(s)	959
Eco47I	GGWCC	1 cut(s)	844
Eco53kI	GAGCTC	1 cut(s)	957
EcoICRI	GAGCTC	1 cut(s)	957
EcoO109I	RGGNCCY	1 cut(s)	844
EcoRII	CCWGG	6 cut(s)	168, 295, 383, 733, 856, 922
EcoT14I	CCWWGG	1 cut(s)	987
EcoT22I	ATGCAT	1 cut(s)	536
EcoT38I	GRGCYC	1 cut(s)	959
EgeI	GGCGCC	1 cut(s)	432
EheI	GGCGCC	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	987
FaeI	CATG	7 cut(s)	145, 331, 379, 582, 685, 871, 1036
FatI	CATG	7 cut(s)	141, 327, 375, 578, 681, 867, 1032
FauI	CCCGC	1 cut(s)	716
FbaI	TGATCA	2 cut(s)	258, 466
Fnu4HI	GCNGC	7 cut(s)	98, 563, 585, 888, 971, 974, 977
FokI	GGATG	3 cut(s)	165, 559, 691
FriOI	GRGCYC	1 cut(s)	959
Fsp4HI	GCNGC	7 cut(s)	98, 563, 585, 888, 971, 974, 977
FspBI	CTAG	4 cut(s)	14, 83, 764, 1010
GlaI	GCGC	2 cut(s)	432, 866
GluI	GCNGC	7 cut(s)	98, 563, 585, 888, 971, 974, 977
GsaI	CCCAGC	2 cut(s)	750, 894
GsuI	CTGGAG	1 cut(s)	879
HaeII	RGCGCY	1 cut(s)	434
HaeIII	GGCC	1 cut(s)	158
HgaI	GACGC	1 cut(s)	893
HhaI	GCGC	2 cut(s)	433, 867
Hin1I	GRCGYC	1 cut(s)	431
Hin1II	CATG	7 cut(s)	145, 331, 379, 582, 685, 871, 1036
Hin6I	GCGC	2 cut(s)	431, 865
HinP1I	GCGC	2 cut(s)	431, 865
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	2 cut(s)	409, 496
HphI	GGTGA	3 cut(s)	138, 268, 452
Hpy166II	GTNNAC	2 cut(s)	316, 691
Hpy188I	TCNGA	7 cut(s)	263, 285, 340, 466, 625, 660, 905
Hpy188III	TCNNGA	1 cut(s)	776
Hpy8I	GTNNAC	2 cut(s)	316, 691
HpyAV	CCTTC	1 cut(s)	874
HpyCH4III	ACNGT	3 cut(s)	80, 656, 942
HpyCH4V	TGCA	7 cut(s)	152, 305, 454, 534, 569, 584, 824
HpyF10VI	GCNNNNNNNGC	2 cut(s)	547, 976
HpyF3I	CTNAG	7 cut(s)	242, 665, 774, 840, 902, 947, 953
Hsp92I	GRCGYC	1 cut(s)	431
Hsp92II	CATG	7 cut(s)	145, 331, 379, 582, 685, 871, 1036
HspAI	GCGC	2 cut(s)	431, 865
KasI	GGCGCC	1 cut(s)	430
Ksp22I	TGATCA	2 cut(s)	258, 466
Kzo9I	GATC	5 cut(s)	67, 258, 466, 981, 1035
Lsp1109I	GCAGC	6 cut(s)	549, 596, 899, 957, 960, 963
LweI	GCATC	5 cut(s)	84, 337, 537, 713, 823
MabI	ACCWGGT	1 cut(s)	733
MaeI	CTAG	4 cut(s)	14, 83, 764, 1010
MaeIII	GTNAC	4 cut(s)	88, 144, 208, 766
MalI	GATC	5 cut(s)	69, 260, 468, 983, 1037
MboI	GATC	5 cut(s)	67, 258, 466, 981, 1035
MboII	GAAGA	3 cut(s)	21, 65, 942
MhlI	GDGCHC	1 cut(s)	959
MluCI	AATT	4 cut(s)	217, 269, 398, 455
Mly113I	GGCGCC	1 cut(s)	431
MlyI	GAGTC	1 cut(s)	490
MmeI	TCCRAC	2 cut(s)	616, 793
MnlI	CCTC	8 cut(s)	81, 169, 247, 334, 387, 738, 835, 920
Mph1103I	ATGCAT	1 cut(s)	536
MroXI	GAANNNNTTC	1 cut(s)	534
MseI	TTAA	2 cut(s)	321, 492
MslI	CAYNNNNRTG	1 cut(s)	686
MspA1I	CMGCKG	1 cut(s)	890
MspR9I	CCNGG	6 cut(s)	170, 297, 385, 735, 858, 924
Mva1269I	GAATGC	2 cut(s)	534, 536
MvaI	CCWGG	6 cut(s)	170, 297, 385, 735, 858, 924
MwoI	GCNNNNNNNGC	2 cut(s)	547, 976
NarI	GGCGCC	1 cut(s)	431
NdeII	GATC	5 cut(s)	67, 258, 466, 981, 1035
NlaIII	CATG	7 cut(s)	145, 331, 379, 582, 685, 871, 1036
NlaIV	GGNNCC	4 cut(s)	432, 520, 726, 846
NmuCI	GTSAC	2 cut(s)	144, 766
NsiI	ATGCAT	1 cut(s)	536
NspI	RCATGY	1 cut(s)	582
PaqCI	CACCTGC	1 cut(s)	157
PciI	ACATGT	1 cut(s)	578
PcsI	WCGNNNNNNNCGW	1 cut(s)	98
PctI	GAATGC	2 cut(s)	534, 536
PdmI	GAANNNNTTC	1 cut(s)	534
PfeI	GAWTC	1 cut(s)	409
PfoI	TCCNGGA	2 cut(s)	295, 856
PkrI	GCNGC	7 cut(s)	99, 564, 586, 889, 972, 975, 978
PleI	GAGTC	1 cut(s)	490
PluTI	GGCGCC	1 cut(s)	434
PpsI	GAGTC	1 cut(s)	490
PpuMI	RGGWCCY	1 cut(s)	844
PscI	ACATGT	1 cut(s)	578
Psp124BI	GAGCTC	1 cut(s)	959
Psp5II	RGGWCCY	1 cut(s)	844
Psp6I	CCWGG	6 cut(s)	168, 295, 383, 733, 856, 922
PspFI	CCCAGC	2 cut(s)	746, 890
PspGI	CCWGG	6 cut(s)	168, 295, 383, 733, 856, 922
PspN4I	GGNNCC	4 cut(s)	432, 520, 726, 846
PspPI	GGNCC	1 cut(s)	844
PspPPI	RGGWCCY	1 cut(s)	844
PstNI	CAGNNNCTG	1 cut(s)	344
PvuII	CAGCTG	1 cut(s)	890
RsaI	GTAC	2 cut(s)	27, 692
RsaNI	GTAC	2 cut(s)	26, 691
RseI	CAYNNNNRTG	1 cut(s)	686
SacI	GAGCTC	1 cut(s)	959
SaqAI	TTAA	2 cut(s)	321, 492
SatI	GCNGC	7 cut(s)	98, 563, 585, 888, 971, 974, 977
Sau3AI	GATC	5 cut(s)	67, 258, 466, 981, 1035
Sau96I	GGNCC	1 cut(s)	844
SchI	GAGTC	1 cut(s)	490
ScrFI	CCNGG	6 cut(s)	170, 297, 385, 735, 858, 924
SduI	GDGCHC	1 cut(s)	959
SexAI	ACCWGGT	1 cut(s)	733
SfaNI	GCATC	5 cut(s)	84, 337, 537, 713, 823
SfoI	GGCGCC	1 cut(s)	432
SinI	GGWCC	1 cut(s)	844
SmiMI	CAYNNNNRTG	1 cut(s)	686
SmlI	CTYRAG	2 cut(s)	351, 447
SmoI	CTYRAG	2 cut(s)	351, 447
SpeI	ACTAGT	2 cut(s)	13, 1009
Sse9I	AATT	4 cut(s)	217, 269, 398, 455
SsiI	CCGC	2 cut(s)	98, 709
SspDI	GGCGCC	1 cut(s)	430
SspMI	CTAG	4 cut(s)	14, 83, 764, 1010
SstI	GAGCTC	1 cut(s)	959
StyD4I	CCNGG	6 cut(s)	168, 295, 383, 733, 856, 922
StyI	CCWWGG	1 cut(s)	987
TaaI	ACNGT	3 cut(s)	80, 656, 942
TasI	AATT	4 cut(s)	217, 269, 398, 455
TatI	WGTACW	1 cut(s)	690
TauI	GCSGC	1 cut(s)	100
TfiI	GAWTC	1 cut(s)	409
Tru1I	TTAA	2 cut(s)	321, 492
Tru9I	TTAA	2 cut(s)	321, 492
TscAI	CASTG	4 cut(s)	83, 159, 548, 693
TseFI	GTSAC	2 cut(s)	144, 766
TseI	GCWGC	6 cut(s)	562, 584, 887, 970, 973, 976
Tsp45I	GTSAC	2 cut(s)	144, 766
TspDTI	ATGAA	5 cut(s)	48, 130, 167, 324, 893
TspRI	CASTG	4 cut(s)	83, 159, 548, 693
VpaK11BI	GGWCC	1 cut(s)	844
XapI	RAATTY	2 cut(s)	217, 269
XceI	RCATGY	1 cut(s)	582
XmnI	GAANNNNTTC	1 cut(s)	534
XspI	CTAG	4 cut(s)	14, 83, 764, 1010
Zsp2I	ATGCAT	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.