Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004584

Physical Location & Seq

Genomic Coordinates Forward (+)

39161410 .. 39161904

Gene Structure 495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0245300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGAAGGCCATGAGGACAACGAGGAAGGCAATAACAACGAAGAAGAAGAAGGGGATGATAATAACATGGAAGATAATGAGGAGCATGAGAGCATTCTTGAGTGGGCTGGACAAATCTTACTCAGTGTTTATGCTAAAGCAAAGCAACTAAACCCAGATTTTAATATTGACAAGGAAGATCCAGAGACAATATGTTTTAGAGTATACAAGATTGATCCAGACAATAACTACTATCATAAGGTAGAAAACCTAGGGGATCAAATATTTTTTGTGGCAGAGGATGGTTCTTCCTTGTCCCTTCTAGCTAGTGATTTCAAAGAGTTACAAGGGAATTGCATCTATTTTGCAACAACAGGAAGTAATATAGAAACTTCCTGCATCTCTTGTGAGGTCGGCATTTTCTACCTGGATAGTGGAAAAATTGAGCAACCCTTTCCAATTGTTAAGATGCCAAGGTACTCTCATCTTAGTTGGTTCACCCCGAGTTTATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0012505 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023051 GO:0023057 GO:0036211 GO:0042562 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051740 GO:0065007 GO:0070297 GO:0070298 GO:0071704 GO:0072328 GO:0140096 GO:1901564 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

GAF HATPase_c HisKA Response_reg

Protein Analysis

164

Amino Acids

18.81

Weight (kDa)

4.14

Isoelectric Point (pI)

54.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	25 - 116	2.6e-15	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40940
fragaria_vesca	FvH4_2g26120 FvH4_2g26120 FvH4_2g26120
malus_domestica	MD03G1292200.v1.1 MD06G1001100.v1.1 MD11G1306200.v1.1
prunus_persica	Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1
pyrus_communis	pycom03g23140 pycom11g26800
rosa_chinensis	RchiOBHm_Chr6g0294491
rosa_laevigata	RLG00000011864
rosa_roxburghii	Rroxscaffold_7G00173280
rosa_rugosa	Rorug06G0245200 Rorug06G0245300 Rorug06G0245400
rosa_samantha	Rh6AG357700 Rh6BG364600 Rh6CG371700 Rh6DG358500
rosa_wichuraiana	Rw6G031200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	204
AclWI	GGATC	3 cut(s)	173, 209, 264
AfaI	GTAC	1 cut(s)	458
AgsI	TTSAA	1 cut(s)	316
AjnI	CCWGG	1 cut(s)	405
AluBI	AGCT	1 cut(s)	305
AluI	AGCT	1 cut(s)	305
Alw26I	GTCTC	1 cut(s)	179
AlwI	GGATC	3 cut(s)	173, 209, 264
Ama87I	CYCGRG	1 cut(s)	481
AoxI	GGCC	1 cut(s)	7
AspA2I	CCTAGG	1 cut(s)	250
AsuHPI	GGTGA	1 cut(s)	469
AvaI	CYCGRG	1 cut(s)	481
AvrII	CCTAGG	1 cut(s)	250
BccI	CCATC	1 cut(s)	275
BciT130I	CCWGG	1 cut(s)	407
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	3 cut(s)	251, 302, 306
BlnI	CCTAGG	1 cut(s)	250
Bme1390I	CCNGG	1 cut(s)	407
BmeT110I	CYCGRG	1 cut(s)	481
BmrFI	CCNGG	1 cut(s)	407
BmsI	GCATC	3 cut(s)	345, 387, 438
BpuEI	CTTGAG	1 cut(s)	119
BsaJI	CCNNGG	2 cut(s)	250, 452
BseBI	CCWGG	1 cut(s)	407
BseDI	CCNNGG	2 cut(s)	250, 452
BseGI	GGATG	2 cut(s)	61, 286
BseMII	CTCAG	1 cut(s)	136
BseRI	GAGGAG	1 cut(s)	95
BshFI	GGCC	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	481
BslFI	GGGAC	1 cut(s)	280
BsmAI	GTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	280
BsmI	GAATGC	1 cut(s)	93
BsnI	GGCC	1 cut(s)	9
BsoBI	CYCGRG	1 cut(s)	481
Bsp143I	GATC	3 cut(s)	178, 214, 256
BspANI	GGCC	1 cut(s)	9
BspCNI	CTCAG	1 cut(s)	135
BspPI	GGATC	3 cut(s)	173, 209, 264
BssECI	CCNNGG	2 cut(s)	250, 452
BssMI	GATC	3 cut(s)	178, 214, 256
BssNAI	GTATAC	1 cut(s)	205
BssT1I	CCWWGG	2 cut(s)	250, 452
Bst1107I	GTATAC	1 cut(s)	205
Bst2UI	CCWGG	1 cut(s)	407
BstDEI	CTNAG	2 cut(s)	122, 467
BstF5I	GGATG	2 cut(s)	61, 286
BstKTI	GATC	3 cut(s)	181, 217, 259
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	3 cut(s)	178, 214, 256
BstNI	CCWGG	1 cut(s)	407
BstSCI	CCNGG	1 cut(s)	405
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BstZ17I	GTATAC	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	9
BtsCI	GGATG	2 cut(s)	61, 286
BtsIMutI	CAGTG	1 cut(s)	130
Csp6I	GTAC	1 cut(s)	457
CviAII	CATG	3 cut(s)	11, 67, 86
CviJI	RGCY	3 cut(s)	9, 107, 305
CviKI_1	RGCY	3 cut(s)	9, 107, 305
CviQI	GTAC	1 cut(s)	457
DdeI	CTNAG	2 cut(s)	122, 467
DpnI	GATC	3 cut(s)	180, 216, 258
DpnII	GATC	3 cut(s)	178, 214, 256
Eco130I	CCWWGG	2 cut(s)	250, 452
Eco88I	CYCGRG	1 cut(s)	481
EcoRII	CCWGG	1 cut(s)	405
EcoT14I	CCWWGG	2 cut(s)	250, 452
ErhI	CCWWGG	2 cut(s)	250, 452
FaeI	CATG	3 cut(s)	14, 70, 89
FaiI	YATR	9 cut(s)	12, 68, 87, 132, 193, 205, 237, 365, 490
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	3 cut(s)	10, 66, 85
FblI	GTMKAC	1 cut(s)	204
FokI	GGATG	2 cut(s)	68, 293
FspBI	CTAG	3 cut(s)	251, 302, 306
HaeIII	GGCC	1 cut(s)	9
Hin1II	CATG	3 cut(s)	14, 70, 89
HphI	GGTGA	1 cut(s)	469
Hpy166II	GTNNAC	2 cut(s)	205, 477
Hpy188III	TCNNGA	3 cut(s)	98, 182, 218
Hpy8I	GTNNAC	2 cut(s)	205, 477
HpyAV	CCTTC	3 cut(s)	20, 44, 308
HpyCH4V	TGCA	3 cut(s)	336, 347, 378
HpyF3I	CTNAG	2 cut(s)	122, 467
Hsp92II	CATG	3 cut(s)	14, 70, 89
Kzo9I	GATC	3 cut(s)	178, 214, 256
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	8 cut(s)	93, 168, 195, 231, 339, 388, 392, 419
LweI	GCATC	3 cut(s)	345, 387, 438
MaeI	CTAG	3 cut(s)	251, 302, 306
MaeIII	GTNAC	1 cut(s)	321
MalI	GATC	3 cut(s)	180, 216, 258
MboI	GATC	3 cut(s)	178, 214, 256
MboII	GAAGA	6 cut(s)	53, 56, 59, 83, 188, 279
MfeI	CAATTG	1 cut(s)	438
MflI	RGATCY	1 cut(s)	178
MluCI	AATT	3 cut(s)	331, 420, 438
MnlI	CCTC	5 cut(s)	7, 16, 73, 271, 382
MseI	TTAA	2 cut(s)	162, 444
MspR9I	CCNGG	1 cut(s)	407
MunI	CAATTG	1 cut(s)	438
Mva1269I	GAATGC	1 cut(s)	93
MvaI	CCWGG	1 cut(s)	407
NdeII	GATC	3 cut(s)	178, 214, 256
NlaIII	CATG	3 cut(s)	14, 70, 89
PctI	GAATGC	1 cut(s)	93
Psp6I	CCWGG	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	405
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	1 cut(s)	458
RsaNI	GTAC	1 cut(s)	457
SaqAI	TTAA	2 cut(s)	162, 444
Sau3AI	GATC	3 cut(s)	178, 214, 256
ScrFI	CCNGG	1 cut(s)	407
SetI	ASST	6 cut(s)	243, 252, 307, 393, 408, 458
SfaNI	GCATC	3 cut(s)	345, 387, 438
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	3 cut(s)	331, 420, 438
SspI	AATATT	2 cut(s)	166, 264
SspMI	CTAG	3 cut(s)	251, 302, 306
StyD4I	CCNGG	1 cut(s)	405
StyI	CCWWGG	2 cut(s)	250, 452
TasI	AATT	3 cut(s)	331, 420, 438
Tru1I	TTAA	2 cut(s)	162, 444
Tru9I	TTAA	2 cut(s)	162, 444
TscAI	CASTG	1 cut(s)	130
TspRI	CASTG	1 cut(s)	130
XmaJI	CCTAGG	1 cut(s)	250
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	3 cut(s)	251, 302, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.