Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004584

Physical Location & Seq

Genomic Coordinates Forward (+)

13349216 .. 13352714

Gene Structure 3499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00173280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2037 bp

ATGTCAATTGGGTCATTCGCACGTGTAAAGGGCCCTTGTATTCTCTCATTCGTTTATCGACCCCGTGCGTCGCCTTCGTTGTCTGTGACCACTGACTACGCTTTTTGGCTCCGCTTTACTCATCCCACTCCTCCTCCTCCTCCTCCTCCTTCTCTGTTTCTGAAATGGGTTAGAAGCTTTGAAGCTCTGCTAGACAGTAGCTGCATAATGGAGTCATGTGATTGTGTTGAACCACAATGGCCCCCTGATGAACTTCTGGTGAAGTATCAGTACATCTCTGATGTGTTTATTGCGTTGGCGTATTTCTCAATTCCATTGGAGCTCATATACTTTGTGCACAAATCCGCTTTCTTCCCATATAGATGGGTGCTTATGCAGTTTGGCGCTTTCATTGTTCTTTGTGGCGCAACCCATTTCATAAACGTGTGGACATTCTCTATGCACACCAAAACTGTTGCCATTGTGATGACTATTGCAAAGGTCTCTTGTGCTGTTGTATCGTGTGCAACCGCGCTGATGCTTGTTCACATTATTCCGGATTTGTTGTCTGTCAAGACCCGGGAGCTCTTTCTCAAGAACAGGGCCGAAGAGCTTGACAGGGAGATGGGCCGTATTCTAACTCAAGAAGAAACAGGAAGGCATGTTAGAATGCTGACTCATGAAATTAGAAGCACACTTGACAGACACACTATACTGAAAACCACTCTTGTTGAGCTGGGAAGGACTTTAGGCCTTGAGGAATGCGCTTTGTGGATGCCGTGCAGGAATGGTATGAACCTTGAACTTTCTCATTCTCTCAACTATGAAGCACAAATTGGGTCTACTGTGCCATTTAGCCTTCCTATAGTTAGTGAAGTTTTCAAGAGCTCTCGAGCAATGCGTATACCATATACCTGCCCCTTGGCCCGGATCAGACCACTCATGGGAACATATGTGCCACCTGAGGTTGTTGCTTTGCGTGTACCGCTGTTGAATCTTTCAAATTTCCAAATCAATGACTGGCCTGATGTCTCTGCGAAAAGCTATGCCATCATGGTTCTGATTCTACCAACAGATAGCACTAGAATGTGGCGAGACCATGAACTTGAACTGGTTGATGTTGTTGCAGATCAGGTCGCTGTTGCTCTTTCACACGCTGCTATTCTTGAAGAGTCTATGCGAGCCAGTGATCAGCTTGTAGAGCAGAATGTTGCTTTAGATTTGGCCCGGAGAGAGGCAGAGCGGGCAATCCATGCTCGCAACGACTTCCTTGCTGTCCTGAACCATGAAATGAGGACACCAATGCATGCAATTATTGCATTGTCTTCACTTCTTTTAGAAACGGAACTAACACTAGAACATAGGGTTATGATAGAATCGATACTAAAGAGTAGCAACCTTTTGGAAACTCTTATTAATGATGTTCTAGATCTTTCTAGACTTGAAGATGGCAGCCTAGACTTGGACATTGGAAAGTTTAACCTCCATGGAGTTTTCAGAGAGGCAATCGATTTGATAAAGCCTATTGCAACTGTGAAGAAGTTATCTATGACTTTAATTCTGGCCCCAGATGTGCCTGTGTGTGCTGTCGGAGATGAGAACCGGCTTATGCAAACTATTTTAAATGTTGCTGGTAATGCTGTCAAGTTTACAAAGGAGGGTTATATTTCAGTTATAGCATCTATTGCAAAACCAGATTCTTCAAGAGATTGGCGGCCGCCTGAATTTTATCCAGCATCAAGTGATGGCCATTTTTACCTACGAGTTCAGGGTGTAGTCGTTTTGGCTCAACAATCATGTATTGTGACCCAGTGGTTTGTGAATACCATGGGAGGTCATATTTGGATCGAGAGTGAGGGCATTGACAAGGGGACTCTTGTTGTATTCATCGTCAAACTCGGGATATGCGACAATTGTGGTAATACAACAATAGCACATCAAAAAGTACCCAAAGGGGAGGCAAATCATGGAAGTGCAGATCTCATTGGATACAAACCAGCTTTTAGAGATGGTTACGGTTTAGCTTCAACAAATCCGCGTTATCAAAGAAGTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0012505 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023051 GO:0023057 GO:0036211 GO:0042562 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051740 GO:0065007 GO:0070297 GO:0070298 GO:0071704 GO:0072328 GO:0140096 GO:1901564 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

GAF HATPase_c HisKA Response_reg

Protein Analysis

678

Amino Acids

75.99

Weight (kDa)

6.15

Isoelectric Point (pI)

37.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ETR1_N	PF25487	86 - 184	3.4e-37	Ethylene receptor 1-like, N-terminal domain
GAF	PF01590	227 - 376	4e-15	GAF domain
HisKA	PF00512	412 - 477	7.4e-17	His Kinase A (phospho-acceptor) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40940
fragaria_vesca	FvH4_2g26120 FvH4_2g26120 FvH4_2g26120
malus_domestica	MD03G1292200.v1.1 MD06G1001100.v1.1 MD11G1306200.v1.1
prunus_persica	Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1
pyrus_communis	pycom03g23140 pycom11g26800
rosa_chinensis	RchiOBHm_Chr6g0294491
rosa_laevigata	RLG00000011864
rosa_roxburghii	Rroxscaffold_7G00173280
rosa_rugosa	Rorug06G0245200 Rorug06G0245300 Rorug06G0245400
rosa_samantha	Rh6AG357700 Rh6BG364600 Rh6CG371700 Rh6DG358500
rosa_wichuraiana	Rw6G031200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	902
AccBSI	CCGCTC	1 cut(s)	1222
AccI	GTMKAC	2 cut(s)	821, 883
AccII	CGCG	2 cut(s)	512, 2017
AccIII	TCCGGA	1 cut(s)	535
AciI	CCGC	8 cut(s)	112, 345, 510, 965, 1222, 1693, 1697, 2015
AclWI	GGATC	2 cut(s)	917, 1832
AcoI	YGGCCR	2 cut(s)	1694, 1726
AcsI	RAATTY	2 cut(s)	982, 1703
AcvI	CACGTG	1 cut(s)	23
AfaI	GTAC	3 cut(s)	272, 963, 1926
AfiI	CCNNNNNNNGG	4 cut(s)	906, 923, 1213, 1441
AflIII	ACRYGT	2 cut(s)	22, 423
AjuI	GAANNNNNNNTTGG	2 cut(s)	798, 830
Alw21I	GWGCWC	4 cut(s)	324, 339, 567, 869
Alw26I	GTCTC	3 cut(s)	487, 1015, 1068
Alw44I	GTGCAC	1 cut(s)	335
AlwI	GGATC	2 cut(s)	917, 1832
AlwNI	CAGNNNCTG	1 cut(s)	201
Ama87I	CYCGRG	3 cut(s)	558, 870, 1877
Aor13HI	TCCGGA	1 cut(s)	535
ApaI	GGGCCC	1 cut(s)	35
ApaLI	GTGCAC	1 cut(s)	335
ApeKI	GCWGC	3 cut(s)	201, 1136, 1431
ApoI	RAATTY	2 cut(s)	982, 1703
AseI	ATTAAT	1 cut(s)	1395
AspLEI	GCGC	4 cut(s)	386, 407, 514, 746
AspS9I	GGNCC	8 cut(s)	31, 32, 240, 582, 607, 904, 1204, 1543
AsuC2I	CCSGG	4 cut(s)	559, 560, 907, 1207
AsuHPI	GGTGA	1 cut(s)	271
AvaI	CYCGRG	3 cut(s)	558, 870, 1877
AxyI	CCTNAGG	1 cut(s)	942
BaeGI	GKGCMC	2 cut(s)	35, 339
BalI	TGGCCA	1 cut(s)	1728
BanII	GRGCYC	4 cut(s)	35, 324, 567, 869
BarI	GAAGNNNNNNTAC	2 cut(s)	254, 286
BbrPI	CACGTG	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	1296
Bbv12I	GWGCWC	4 cut(s)	324, 339, 567, 869
BbvI	GCAGC	3 cut(s)	188, 1123, 1443
BccI	CCATC	6 cut(s)	357, 598, 1037, 1421, 1718, 1982
BceAI	ACGGC	2 cut(s)	594, 742
BcgI	CGANNNNNNTGC	2 cut(s)	1232, 1266
BciVI	GTATCC	1 cut(s)	1961
BclI	TGATCA	1 cut(s)	1168
BcnI	CCSGG	4 cut(s)	559, 560, 907, 1207
BcoDI	GTCTC	3 cut(s)	487, 1015, 1068
BfaI	CTAG	6 cut(s)	191, 1062, 1334, 1406, 1416, 1436
BfmI	CTRYAG	1 cut(s)	843
BfoI	RGCGCY	1 cut(s)	387
BfuAI	ACCTGC	1 cut(s)	902
BfuI	GTATCC	1 cut(s)	1961
BglII	AGATCT	2 cut(s)	1408, 1957
BisI	GCNGC	5 cut(s)	202, 1137, 1432, 1694, 1697
BlsI	GCNGC	5 cut(s)	203, 1138, 1433, 1695, 1698
Bme1390I	CCNGG	4 cut(s)	559, 560, 907, 1207
BmeT110I	CYCGRG	3 cut(s)	558, 870, 1877
BmgT120I	GGNCC	8 cut(s)	31, 32, 240, 582, 607, 904, 1204, 1543
BmiI	GGNNCC	4 cut(s)	33, 110, 242, 1545
BmrFI	CCNGG	4 cut(s)	559, 560, 907, 1207
BmrI	ACTGGG	1 cut(s)	1783
BmsI	GCATC	4 cut(s)	507, 744, 1667, 1724
BmuI	ACTGGG	1 cut(s)	1783
BpiI	GAAGAC	1 cut(s)	1296
BpuEI	CTTGAG	3 cut(s)	557, 606, 755
BpuMI	CCSGG	4 cut(s)	559, 560, 907, 1207
Bsa29I	ATCGAT	2 cut(s)	1358, 1488
BsaAI	YACGTR	1 cut(s)	23
BsaI	GGTCTC	2 cut(s)	487, 1068
BsaJI	CCNNGG	4 cut(s)	558, 900, 1465, 1806
BsaWI	WCCGGW	1 cut(s)	535
BsaXI	ACNNNNNCTCC	2 cut(s)	118, 148
Bsc4I	CCNNNNNNNGG	4 cut(s)	906, 923, 1213, 1441
Bse118I	RCCGGY	1 cut(s)	1581
Bse1I	ACTGG	4 cut(s)	1004, 1095, 1164, 1789
Bse21I	CCTNAGG	1 cut(s)	942
Bse3DI	GCAATG	1 cut(s)	882
BseAI	TCCGGA	1 cut(s)	535
BseCI	ATCGAT	2 cut(s)	1358, 1488
BseDI	CCNNGG	4 cut(s)	558, 900, 1465, 1806
BseGI	GGATG	2 cut(s)	121, 759
BseLI	CCNNNNNNNGG	4 cut(s)	906, 923, 1213, 1441
BseMI	GCAATG	1 cut(s)	882
BseMII	CTCAG	1 cut(s)	933
BseNI	ACTGG	4 cut(s)	1004, 1095, 1164, 1789
BseRI	GAGGAG	6 cut(s)	120, 123, 126, 129, 132, 135
BseSI	GKGCMC	2 cut(s)	35, 339
BseX3I	CGGCCG	1 cut(s)	1694
BseXI	GCAGC	3 cut(s)	188, 1123, 1443
BseYI	CCCAGC	1 cut(s)	715
BsgI	GTGCAG	2 cut(s)	781, 1974
Bsh1236I	CGCG	2 cut(s)	512, 2017
Bsh1285I	CGRYCG	1 cut(s)	1697
BshVI	ATCGAT	2 cut(s)	1358, 1488
BsiEI	CGRYCG	1 cut(s)	1697
BsiHKAI	GWGCWC	4 cut(s)	324, 339, 567, 869
BsiHKCI	CYCGRG	3 cut(s)	558, 870, 1877
BsiSI	CCGG	5 cut(s)	536, 559, 907, 1207, 1582
BslFI	GGGAC	1 cut(s)	1864
BslI	CCNNNNNNNGG	4 cut(s)	906, 923, 1213, 1441
BsmAI	GTCTC	3 cut(s)	487, 1015, 1068
BsmFI	GGGAC	1 cut(s)	1864
BsmI	GAATGC	2 cut(s)	654, 746
Bso31I	GGTCTC	2 cut(s)	487, 1068
BsoBI	CYCGRG	3 cut(s)	558, 870, 1877
Bsp120I	GGGCCC	1 cut(s)	31
Bsp1286I	GDGCHC	5 cut(s)	35, 324, 339, 567, 869
Bsp13I	TCCGGA	1 cut(s)	535
Bsp143I	GATC	6 cut(s)	909, 1108, 1168, 1408, 1824, 1957
Bsp19I	CCATGG	2 cut(s)	1465, 1806
BspACI	CCGC	8 cut(s)	112, 345, 510, 965, 1222, 1693, 1697, 2015
BspCNI	CTCAG	1 cut(s)	934
BspDI	ATCGAT	2 cut(s)	1358, 1488
BspEI	TCCGGA	1 cut(s)	535
BspFNI	CGCG	2 cut(s)	512, 2017
BspHI	TCATGA	1 cut(s)	658
BspLI	GGNNCC	4 cut(s)	33, 110, 242, 1545
BspMI	ACCTGC	1 cut(s)	902
BspPI	GGATC	2 cut(s)	917, 1832
BspQI	GCTCTTC	1 cut(s)	582
BspTNI	GGTCTC	2 cut(s)	487, 1068
BsrBI	CCGCTC	1 cut(s)	1222
BsrDI	GCAATG	1 cut(s)	882
BsrFI	RCCGGY	1 cut(s)	1581
BsrI	ACTGG	4 cut(s)	1004, 1095, 1164, 1789
BssAI	RCCGGY	1 cut(s)	1581
BssECI	CCNNGG	4 cut(s)	558, 900, 1465, 1806
BssMI	GATC	6 cut(s)	909, 1108, 1168, 1408, 1824, 1957
BssNAI	GTATAC	1 cut(s)	884
BssT1I	CCWWGG	3 cut(s)	900, 1465, 1806
Bst1107I	GTATAC	1 cut(s)	884
Bst4CI	ACNGT	5 cut(s)	197, 454, 826, 1513, 1997
Bst6I	CTCTTC	2 cut(s)	582, 1143
BstAPI	GCANNNNNTGC	3 cut(s)	1232, 1295, 1664
BstBAI	YACGTR	1 cut(s)	23
BstC8I	GCNNGC	4 cut(s)	1161, 1224, 1237, 1287
BstDEI	CTNAG	1 cut(s)	942
BstDSI	CCRYGG	2 cut(s)	1465, 1806
BstF5I	GGATG	2 cut(s)	121, 759
BstFNI	CGCG	2 cut(s)	512, 2017
BstH2I	RGCGCY	1 cut(s)	387
BstHHI	GCGC	4 cut(s)	386, 407, 514, 746
BstKTI	GATC	6 cut(s)	912, 1111, 1171, 1411, 1827, 1960
BstMAI	GTCTC	3 cut(s)	487, 1015, 1068
BstMBI	GATC	6 cut(s)	909, 1108, 1168, 1408, 1824, 1957
BstMCI	CGRYCG	1 cut(s)	1697
BstMWI	GCNNNNNNNGC	7 cut(s)	964, 1180, 1223, 1232, 1295, 1616, 1664
BstNSI	RCATGY	2 cut(s)	644, 1289
BstSCI	CCNGG	4 cut(s)	557, 558, 905, 1205
BstSFI	CTRYAG	1 cut(s)	843
BstSLI	GKGCMC	2 cut(s)	35, 339
BstUI	CGCG	2 cut(s)	512, 2017
BstV1I	GCAGC	3 cut(s)	188, 1123, 1443
BstV2I	GAAGAC	1 cut(s)	1296
BstX2I	RGATCY	2 cut(s)	1408, 1957
BstXI	CCANNNNNNTGG	1 cut(s)	363
BstYI	RGATCY	2 cut(s)	1408, 1957
BstZ17I	GTATAC	1 cut(s)	884
BstZI	CGGCCG	1 cut(s)	1694
Bsu15I	ATCGAT	2 cut(s)	1358, 1488
Bsu36I	CCTNAGG	1 cut(s)	942
BsuI	GTATCC	1 cut(s)	1961
BsuTUI	ATCGAT	2 cut(s)	1358, 1488
BtgI	CCRYGG	2 cut(s)	1465, 1806
BtsCI	GGATG	2 cut(s)	121, 759
BtsIMutI	CAGTG	3 cut(s)	90, 1171, 1796
BveI	ACCTGC	1 cut(s)	902
Cac8I	GCNNGC	4 cut(s)	1161, 1224, 1237, 1287
CaiI	CAGNNNCTG	1 cut(s)	201
CciI	TCATGA	1 cut(s)	658
CciNI	GCGGCCGC	1 cut(s)	1694
CfoI	GCGC	4 cut(s)	386, 407, 514, 746
Cfr10I	RCCGGY	1 cut(s)	1581
Cfr13I	GGNCC	8 cut(s)	31, 32, 240, 582, 607, 904, 1204, 1543
Cfr9I	CCCGGG	1 cut(s)	558
ClaI	ATCGAT	2 cut(s)	1358, 1488
CseI	GACGC	1 cut(s)	57
Csp6I	GTAC	3 cut(s)	271, 962, 1925
CspCI	CAANNNNNGTGG	2 cut(s)	691, 726
CviQI	GTAC	3 cut(s)	271, 962, 1925
DdeI	CTNAG	1 cut(s)	942
DpnI	GATC	6 cut(s)	911, 1110, 1170, 1410, 1826, 1959
DpnII	GATC	6 cut(s)	909, 1108, 1168, 1408, 1824, 1957
DraI	TTTAAA	1 cut(s)	1602
EaeI	YGGCCR	2 cut(s)	1694, 1726
EagI	CGGCCG	1 cut(s)	1694
Eam1104I	CTCTTC	2 cut(s)	582, 1143
EarI	CTCTTC	2 cut(s)	582, 1143
Ecl136II	GAGCTC	3 cut(s)	322, 565, 867
EclXI	CGGCCG	1 cut(s)	1694
Eco130I	CCWWGG	3 cut(s)	900, 1465, 1806
Eco147I	AGGCCT	1 cut(s)	732
Eco24I	GRGCYC	4 cut(s)	35, 324, 567, 869
Eco31I	GGTCTC	2 cut(s)	487, 1068
Eco52I	CGGCCG	1 cut(s)	1694
Eco53kI	GAGCTC	3 cut(s)	322, 565, 867
Eco72I	CACGTG	1 cut(s)	23
Eco81I	CCTNAGG	1 cut(s)	942
Eco88I	CYCGRG	3 cut(s)	558, 870, 1877
EcoICRI	GAGCTC	3 cut(s)	322, 565, 867
EcoO109I	RGGNCCY	2 cut(s)	31, 32
EcoT14I	CCWWGG	3 cut(s)	900, 1465, 1806
EcoT22I	ATGCAT	1 cut(s)	1287
EcoT38I	GRGCYC	4 cut(s)	35, 324, 567, 869
ErhI	CCWWGG	3 cut(s)	900, 1465, 1806
FaqI	GGGAC	1 cut(s)	1864
FauI	CCCGC	1 cut(s)	1215
FauNDI	CATATG	1 cut(s)	931
FbaI	TGATCA	1 cut(s)	1168
FblI	GTMKAC	2 cut(s)	821, 883
Fnu4HI	GCNGC	5 cut(s)	202, 1137, 1432, 1694, 1697
FokI	GGATG	2 cut(s)	108, 766
FriOI	GRGCYC	4 cut(s)	35, 324, 567, 869
Fsp4HI	GCNGC	5 cut(s)	202, 1137, 1432, 1694, 1697
FspBI	CTAG	6 cut(s)	191, 1062, 1334, 1406, 1416, 1436
GlaI	GCGC	4 cut(s)	385, 406, 513, 745
GluI	GCNGC	5 cut(s)	202, 1137, 1432, 1694, 1697
GsaI	CCCAGC	1 cut(s)	719
HaeII	RGCGCY	1 cut(s)	387
HapII	CCGG	5 cut(s)	536, 559, 907, 1207, 1582
HgaI	GACGC	1 cut(s)	57
HhaI	GCGC	4 cut(s)	386, 407, 514, 746
Hin6I	GCGC	4 cut(s)	384, 405, 512, 744
HinP1I	GCGC	4 cut(s)	384, 405, 512, 744
HindIII	AAGCTT	1 cut(s)	175
HinfI	GANTC	8 cut(s)	212, 655, 973, 1042, 1151, 1355, 1676, 1852
HpaII	CCGG	5 cut(s)	536, 559, 907, 1207, 1582
HphI	GGTGA	1 cut(s)	271
Hpy166II	GTNNAC	7 cut(s)	337, 429, 526, 822, 884, 962, 1629
Hpy188I	TCNGA	6 cut(s)	162, 280, 914, 1041, 1478, 1571
Hpy8I	GTNNAC	7 cut(s)	337, 429, 526, 822, 884, 962, 1629
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	5 cut(s)	84, 159, 630, 714, 848
HpyCH4III	ACNGT	5 cut(s)	197, 454, 826, 1513, 1997
HpyCH4IV	ACGT	2 cut(s)	22, 423
HpyF10VI	GCNNNNNNNGC	7 cut(s)	964, 1180, 1223, 1232, 1295, 1616, 1664
HpyF3I	CTNAG	1 cut(s)	942
HpySE526I	ACGT	2 cut(s)	22, 423
HspAI	GCGC	4 cut(s)	384, 405, 512, 744
Kpn2I	TCCGGA	1 cut(s)	535
Ksp22I	TGATCA	1 cut(s)	1168
Kzo9I	GATC	6 cut(s)	909, 1108, 1168, 1408, 1824, 1957
LguI	GCTCTTC	1 cut(s)	582
LmnI	GCTCC	3 cut(s)	114, 319, 562
Lsp1109I	GCAGC	3 cut(s)	188, 1123, 1443
LweI	GCATC	4 cut(s)	507, 744, 1667, 1724
MaeI	CTAG	6 cut(s)	191, 1062, 1334, 1406, 1416, 1436
MaeII	ACGT	2 cut(s)	22, 423
MaeIII	GTNAC	3 cut(s)	85, 1783, 1991
MalI	GATC	6 cut(s)	911, 1110, 1170, 1410, 1826, 1959
MbiI	CCGCTC	1 cut(s)	1222
MboI	GATC	6 cut(s)	909, 1108, 1168, 1408, 1824, 1957
MboII	GAAGA	8 cut(s)	343, 599, 638, 1160, 1296, 1436, 1528, 1671
MfeI	CAATTG	2 cut(s)	6, 1891
MflI	RGATCY	2 cut(s)	1408, 1957
MhlI	GDGCHC	5 cut(s)	35, 324, 339, 567, 869
MlsI	TGGCCA	1 cut(s)	1728
MluCI	AATT	9 cut(s)	6, 309, 663, 813, 982, 1290, 1536, 1703, 1891
MluNI	TGGCCA	1 cut(s)	1728
MlyI	GAGTC	4 cut(s)	221, 649, 1160, 1846
MmeI	TCCRAC	1 cut(s)	1549
Mox20I	TGGCCA	1 cut(s)	1728
Mph1103I	ATGCAT	1 cut(s)	1287
MroI	TCCGGA	1 cut(s)	535
MscI	TGGCCA	1 cut(s)	1728
MseI	TTAA	4 cut(s)	1395, 1458, 1535, 1601
MslI	CAYNNNNRTG	5 cut(s)	361, 422, 464, 1064, 1950
Msp20I	TGGCCA	1 cut(s)	1728
MspA1I	CMGCKG	1 cut(s)	967
MspI	CCGG	5 cut(s)	536, 559, 907, 1207, 1582
MspR9I	CCNGG	4 cut(s)	559, 560, 907, 1207
MunI	CAATTG	2 cut(s)	6, 1891
Mva1269I	GAATGC	2 cut(s)	654, 746
MvnI	CGCG	2 cut(s)	512, 2017
MwoI	GCNNNNNNNGC	7 cut(s)	964, 1180, 1223, 1232, 1295, 1616, 1664
NciI	CCSGG	4 cut(s)	559, 560, 907, 1207
NcoI	CCATGG	2 cut(s)	1465, 1806
NdeI	CATATG	1 cut(s)	931
NdeII	GATC	6 cut(s)	909, 1108, 1168, 1408, 1824, 1957
NlaIV	GGNNCC	4 cut(s)	33, 110, 242, 1545
NmuCI	GTSAC	2 cut(s)	85, 1783
NotI	GCGGCCGC	1 cut(s)	1694
NsiI	ATGCAT	1 cut(s)	1287
NspI	RCATGY	2 cut(s)	644, 1289
PaeI	GCATGC	1 cut(s)	1289
PaeR7I	CTCGAG	1 cut(s)	870
PagI	TCATGA	1 cut(s)	658
PceI	AGGCCT	1 cut(s)	732
PciSI	GCTCTTC	1 cut(s)	582
PcsI	WCGNNNNNNNCGW	2 cut(s)	877, 1884
PctI	GAATGC	2 cut(s)	654, 746
PfeI	GAWTC	4 cut(s)	973, 1042, 1355, 1676
PkrI	GCNGC	5 cut(s)	203, 1138, 1433, 1695, 1698
PleI	GAGTC	4 cut(s)	220, 649, 1159, 1846
PmaCI	CACGTG	1 cut(s)	23
PmlI	CACGTG	1 cut(s)	23
PpsI	GAGTC	4 cut(s)	220, 649, 1159, 1846
Ppu21I	YACGTR	1 cut(s)	23
PshBI	ATTAAT	1 cut(s)	1395
Psp124BI	GAGCTC	3 cut(s)	324, 567, 869
PspCI	CACGTG	1 cut(s)	23
PspFI	CCCAGC	1 cut(s)	715
PspN4I	GGNNCC	4 cut(s)	33, 110, 242, 1545
PspOMI	GGGCCC	1 cut(s)	31
PspPI	GGNCC	8 cut(s)	31, 32, 240, 582, 607, 904, 1204, 1543
PstNI	CAGNNNCTG	1 cut(s)	201
PsuI	RGATCY	2 cut(s)	1408, 1957
RsaI	GTAC	3 cut(s)	272, 963, 1926
RsaNI	GTAC	3 cut(s)	271, 962, 1925
RseI	CAYNNNNRTG	5 cut(s)	361, 422, 464, 1064, 1950
SacI	GAGCTC	3 cut(s)	324, 567, 869
SapI	GCTCTTC	1 cut(s)	582
SaqAI	TTAA	4 cut(s)	1395, 1458, 1535, 1601
SatI	GCNGC	5 cut(s)	202, 1137, 1432, 1694, 1697
Sau3AI	GATC	6 cut(s)	909, 1108, 1168, 1408, 1824, 1957
Sau96I	GGNCC	8 cut(s)	31, 32, 240, 582, 607, 904, 1204, 1543
SchI	GAGTC	4 cut(s)	221, 649, 1160, 1846
ScrFI	CCNGG	4 cut(s)	559, 560, 907, 1207
SduI	GDGCHC	5 cut(s)	35, 324, 339, 567, 869
SfaNI	GCATC	4 cut(s)	507, 744, 1667, 1724
SfcI	CTRYAG	1 cut(s)	843
Sfr274I	CTCGAG	1 cut(s)	870
SlaI	CTCGAG	1 cut(s)	870
SmaI	CCCGGG	1 cut(s)	560
SmiMI	CAYNNNNRTG	5 cut(s)	361, 422, 464, 1064, 1950
SmlI	CTYRAG	4 cut(s)	572, 621, 734, 870
SmoI	CTYRAG	4 cut(s)	572, 621, 734, 870
SphI	GCATGC	1 cut(s)	1289
Sse9I	AATT	9 cut(s)	6, 309, 663, 813, 982, 1290, 1536, 1703, 1891
SseBI	AGGCCT	1 cut(s)	732
SsiI	CCGC	8 cut(s)	112, 345, 510, 965, 1222, 1693, 1697, 2015
SspMI	CTAG	6 cut(s)	191, 1062, 1334, 1406, 1416, 1436
SstI	GAGCTC	3 cut(s)	324, 567, 869
StuI	AGGCCT	1 cut(s)	732
StyD4I	CCNGG	4 cut(s)	557, 558, 905, 1205
StyI	CCWWGG	3 cut(s)	900, 1465, 1806
TaaI	ACNGT	5 cut(s)	197, 454, 826, 1513, 1997
TaiI	ACGT	2 cut(s)	25, 426
TaqI	TCGA	5 cut(s)	58, 871, 1358, 1488, 1827
TasI	AATT	9 cut(s)	6, 309, 663, 813, 982, 1290, 1536, 1703, 1891
TatI	WGTACW	1 cut(s)	270
TauI	GCSGC	2 cut(s)	1696, 1699
TfiI	GAWTC	4 cut(s)	973, 1042, 1355, 1676
Tru1I	TTAA	4 cut(s)	1395, 1458, 1535, 1601
Tru9I	TTAA	4 cut(s)	1395, 1458, 1535, 1601
TscAI	CASTG	3 cut(s)	97, 1171, 1796
TseFI	GTSAC	2 cut(s)	85, 1783
TseI	GCWGC	3 cut(s)	201, 1136, 1431
Tsp45I	GTSAC	2 cut(s)	85, 1783
TspDTI	ATGAA	9 cut(s)	264, 379, 406, 675, 788, 819, 1095, 1281, 1855
TspGWI	ACGGA	1 cut(s)	1337
TspMI	CCCGGG	1 cut(s)	558
TspRI	CASTG	3 cut(s)	97, 1171, 1796
VneI	GTGCAC	1 cut(s)	335
VspI	ATTAAT	1 cut(s)	1395
XapI	RAATTY	2 cut(s)	982, 1703
XbaI	TCTAGA	2 cut(s)	1405, 1415
XceI	RCATGY	2 cut(s)	644, 1289
XhoI	CTCGAG	1 cut(s)	870
XmaI	CCCGGG	1 cut(s)	558
XmiI	GTMKAC	2 cut(s)	821, 883
XspI	CTAG	6 cut(s)	191, 1062, 1334, 1406, 1416, 1436
Zsp2I	ATGCAT	1 cut(s)	1287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.