Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004584

Physical Location & Seq

Genomic Coordinates Forward (+)

39160773 .. 39161390

Gene Structure 618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0245200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGAAGTCGAGGCTGGCCAGGCTAGTTCCGAGATGTTTCCATCTGCAATGGTTTATTTGTTCTTCCAAAGGTTGGTTGATTTTGTGGAAGTGGGACTATGTCGGGCTAAAACGTGAGACGTTTATCTTTCTATTAAATCCAGTTTCAGGAGCCCAACACCAACTTCCATCGTTAAAAACAATTCCATCTTATGGAAAACATTCTACCATTGATGGATTGGTTTTATCCAGCCCAGACATCTCAGAATGTATGGTGGCAGCAGTTCATAATAGTGGCGAACTGGCTTTGTGTAGACCTAGAGACAAAAGCTGGAGTGTCTACCAAGTATTTGAAGAAAATGAAAATCTTGTCGAGAGAGTCAACAGAATATTGTTTTCCAGCACTGGCGTGCTATATGCCTTGGTTACAGGTAACCGCAATGGTCGTGGTGTTGATGCAGACCGCACTTTAAAGTTCGGAGATGAGGCAGTGAAATTGAAGCTGATCTATGACATAGAGGACTGGTGGATTGATGCCGGGGTTGATCCGGTAGGGCTTTTGTGCATGGCATACTTGTTGGAATCAACAAACAACGAAATTTTATTAATTGATCCATCAAATTCTGAGAATGGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0012505 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023051 GO:0023057 GO:0036211 GO:0042562 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051740 GO:0065007 GO:0070297 GO:0070298 GO:0071704 GO:0072328 GO:0140096 GO:1901564 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

GAF HATPase_c HisKA Response_reg

Protein Analysis

205

Amino Acids

23.15

Weight (kDa)

5.82

Isoelectric Point (pI)

36.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	12 - 141	4.4e-16	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40940
fragaria_vesca	FvH4_2g26120 FvH4_2g26120 FvH4_2g26120
malus_domestica	MD03G1292200.v1.1 MD06G1001100.v1.1 MD11G1306200.v1.1
prunus_persica	Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1 Prupe.8G265200_v2.0.a1
pyrus_communis	pycom03g23140 pycom11g26800
rosa_chinensis	RchiOBHm_Chr6g0294491
rosa_laevigata	RLG00000011864
rosa_roxburghii	Rroxscaffold_7G00173280
rosa_rugosa	Rorug06G0245200 Rorug06G0245300 Rorug06G0245400
rosa_samantha	Rh6AG357700 Rh6BG364600 Rh6CG371700 Rh6DG358500
rosa_wichuraiana	Rw6G031200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	72, 191
AccI	GTMKAC	2 cut(s)	292, 318
AciI	CCGC	2 cut(s)	415, 442
AclWI	GGATC	2 cut(s)	518, 584
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	2 cut(s)	576, 598
AfiI	CCNNNNNNNGG	3 cut(s)	72, 146, 191
AgsI	TTSAA	2 cut(s)	332, 478
AjnI	CCWGG	1 cut(s)	17
AjuI	GAANNNNNNNTTGG	2 cut(s)	147, 179
AleI	CACNNNNGTG	1 cut(s)	386
AluBI	AGCT	2 cut(s)	309, 481
AluI	AGCT	2 cut(s)	309, 481
Alw26I	GTCTC	2 cut(s)	110, 294
AlwI	GGATC	2 cut(s)	518, 584
AoxI	GGCC	1 cut(s)	15
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	2 cut(s)	576, 598
AseI	ATTAAT	1 cut(s)	584
Asp700I	GAANNNNTTC	1 cut(s)	199
AsuC2I	CCSGG	1 cut(s)	517
BalI	TGGCCA	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	269
BccI	CCATC	5 cut(s)	48, 175, 193, 206, 601
BciT130I	CCWGG	1 cut(s)	19
BcnI	CCSGG	1 cut(s)	517
BcoDI	GTCTC	2 cut(s)	110, 294
BfaI	CTAG	2 cut(s)	23, 297
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	2 cut(s)	19, 517
BmiI	GGNNCC	1 cut(s)	151
BmrFI	CCNGG	2 cut(s)	19, 517
BmsI	GCATC	2 cut(s)	424, 502
BpmI	CTGGAG	1 cut(s)	331
BpuMI	CCSGG	1 cut(s)	517
BsaJI	CCNNGG	2 cut(s)	399, 516
BsaWI	WCCGGW	1 cut(s)	526
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 146, 191
Bse1I	ACTGG	4 cut(s)	140, 285, 388, 506
Bse3DI	GCAATG	2 cut(s)	53, 424
BseBI	CCWGG	1 cut(s)	19
BseDI	CCNNGG	2 cut(s)	399, 516
BseGI	GGATG	1 cut(s)	617
BseLI	CCNNNNNNNGG	3 cut(s)	72, 146, 191
BseMI	GCAATG	2 cut(s)	53, 424
BseMII	CTCAG	2 cut(s)	255, 594
BseNI	ACTGG	4 cut(s)	140, 285, 388, 506
BseXI	GCAGC	1 cut(s)	269
BshFI	GGCC	1 cut(s)	17
BsiSI	CCGG	2 cut(s)	516, 527
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	3 cut(s)	72, 146, 191
BsmAI	GTCTC	2 cut(s)	110, 294
BsmBI	CGTCTC	1 cut(s)	110
BsmFI	GGGAC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	3 cut(s)	483, 523, 589
BspACI	CCGC	2 cut(s)	415, 442
BspANI	GGCC	1 cut(s)	17
BspCNI	CTCAG	2 cut(s)	254, 595
BspLI	GGNNCC	1 cut(s)	151
BspPI	GGATC	2 cut(s)	518, 584
BsrDI	GCAATG	2 cut(s)	53, 424
BsrI	ACTGG	4 cut(s)	140, 285, 388, 506
BssECI	CCNNGG	2 cut(s)	399, 516
BssMI	GATC	3 cut(s)	483, 523, 589
BssT1I	CCWWGG	1 cut(s)	399
Bst2UI	CCWGG	1 cut(s)	19
BstC8I	GCNNGC	2 cut(s)	15, 389
BstDEI	CTNAG	2 cut(s)	241, 603
BstEII	GGTNACC	1 cut(s)	410
BstF5I	GGATG	1 cut(s)	617
BstKTI	GATC	3 cut(s)	486, 526, 592
BstMAI	GTCTC	2 cut(s)	110, 294
BstMBI	GATC	3 cut(s)	483, 523, 589
BstMWI	GCNNNNNNNGC	1 cut(s)	19
BstNI	CCWGG	1 cut(s)	19
BstPI	GGTNACC	1 cut(s)	410
BstSCI	CCNGG	2 cut(s)	17, 515
BstV1I	GCAGC	1 cut(s)	269
BsuRI	GGCC	1 cut(s)	17
BtsCI	GGATG	1 cut(s)	617
BtsI	GCAGTG	1 cut(s)	474
BtsIMutI	CAGTG	2 cut(s)	381, 474
Cac8I	GCNNGC	2 cut(s)	15, 389
CspCI	CAANNNNNGTGG	2 cut(s)	406, 441
CviAII	CATG	1 cut(s)	544
DdeI	CTNAG	2 cut(s)	241, 603
DpnI	GATC	3 cut(s)	485, 525, 591
DpnII	GATC	3 cut(s)	483, 523, 589
DraI	TTTAAA	1 cut(s)	450
EaeI	YGGCCR	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	154
Eco91I	GGTNACC	1 cut(s)	410
EcoO65I	GGTNACC	1 cut(s)	410
EcoRII	CCWGG	1 cut(s)	17
EcoT14I	CCWWGG	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	399
Esp3I	CGTCTC	1 cut(s)	110
FaeI	CATG	1 cut(s)	547
FaqI	GGGAC	1 cut(s)	107
FatI	CATG	1 cut(s)	543
FblI	GTMKAC	2 cut(s)	292, 318
Fnu4HI	GCNGC	1 cut(s)	258
FriOI	GRGCYC	1 cut(s)	154
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	2 cut(s)	23, 297
GluI	GCNGC	1 cut(s)	258
GsuI	CTGGAG	1 cut(s)	331
HaeIII	GGCC	1 cut(s)	17
HapII	CCGG	2 cut(s)	516, 527
Hin1II	CATG	1 cut(s)	547
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	2 cut(s)	357, 560
HpaII	CCGG	2 cut(s)	516, 527
Hpy166II	GTNNAC	3 cut(s)	293, 319, 361
Hpy188I	TCNGA	4 cut(s)	30, 244, 458, 604
Hpy188III	TCNNGA	2 cut(s)	147, 352
Hpy8I	GTNNAC	3 cut(s)	293, 319, 361
HpyCH4IV	ACGT	2 cut(s)	112, 119
HpyCH4V	TGCA	3 cut(s)	46, 437, 543
HpyF10VI	GCNNNNNNNGC	1 cut(s)	19
HpyF3I	CTNAG	2 cut(s)	241, 603
HpySE526I	ACGT	2 cut(s)	112, 119
Hsp92II	CATG	1 cut(s)	547
Kzo9I	GATC	3 cut(s)	483, 523, 589
LmnI	GCTCC	1 cut(s)	149
Lsp1109I	GCAGC	1 cut(s)	269
LweI	GCATC	2 cut(s)	424, 502
MaeI	CTAG	2 cut(s)	23, 297
MaeII	ACGT	2 cut(s)	112, 119
MaeIII	GTNAC	2 cut(s)	403, 410
MalI	GATC	3 cut(s)	485, 525, 591
MboI	GATC	3 cut(s)	483, 523, 589
MboII	GAAGA	2 cut(s)	54, 344
MhlI	GDGCHC	1 cut(s)	154
MlsI	TGGCCA	1 cut(s)	17
MluCI	AATT	5 cut(s)	180, 473, 576, 585, 598
MluNI	TGGCCA	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	366
MmeI	TCCRAC	1 cut(s)	537
MnlI	CCTC	3 cut(s)	3, 457, 490
Mox20I	TGGCCA	1 cut(s)	17
MroXI	GAANNNNTTC	1 cut(s)	199
MscI	TGGCCA	1 cut(s)	17
MseI	TTAA	4 cut(s)	134, 173, 449, 584
MslI	CAYNNNNRTG	2 cut(s)	270, 386
Msp20I	TGGCCA	1 cut(s)	17
MspI	CCGG	2 cut(s)	516, 527
MspR9I	CCNGG	2 cut(s)	19, 517
MvaI	CCWGG	1 cut(s)	19
MwoI	GCNNNNNNNGC	1 cut(s)	19
NciI	CCSGG	1 cut(s)	517
NdeII	GATC	3 cut(s)	483, 523, 589
NlaIII	CATG	1 cut(s)	547
NlaIV	GGNNCC	1 cut(s)	151
OliI	CACNNNNGTG	1 cut(s)	386
PdmI	GAANNNNTTC	1 cut(s)	199
PfeI	GAWTC	1 cut(s)	560
PflFI	GACNNNGTC	1 cut(s)	98
PflMI	CCANNNNNTGG	2 cut(s)	72, 191
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	1 cut(s)	365
PpsI	GAGTC	1 cut(s)	365
PshBI	ATTAAT	1 cut(s)	584
Psp6I	CCWGG	1 cut(s)	17
PspEI	GGTNACC	1 cut(s)	410
PspGI	CCWGG	1 cut(s)	17
PspN4I	GGNNCC	1 cut(s)	151
PsyI	GACNNNGTC	1 cut(s)	98
RseI	CAYNNNNRTG	2 cut(s)	270, 386
SaqAI	TTAA	4 cut(s)	134, 173, 449, 584
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	3 cut(s)	483, 523, 589
SchI	GAGTC	1 cut(s)	366
ScrFI	CCNGG	2 cut(s)	19, 517
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	7 cut(s)	73, 115, 122, 298, 311, 412, 483
SfaNI	GCATC	2 cut(s)	424, 502
SmiMI	CAYNNNNRTG	2 cut(s)	270, 386
Sse9I	AATT	5 cut(s)	180, 473, 576, 585, 598
SsiI	CCGC	2 cut(s)	415, 442
SspI	AATATT	1 cut(s)	369
SspMI	CTAG	2 cut(s)	23, 297
StyD4I	CCNGG	2 cut(s)	17, 515
StyI	CCWWGG	1 cut(s)	399
TaiI	ACGT	2 cut(s)	115, 122
TaqI	TCGA	2 cut(s)	8, 351
TasI	AATT	5 cut(s)	180, 473, 576, 585, 598
TfiI	GAWTC	1 cut(s)	560
Tru1I	TTAA	4 cut(s)	134, 173, 449, 584
Tru9I	TTAA	4 cut(s)	134, 173, 449, 584
TscAI	CASTG	2 cut(s)	388, 474
TseI	GCWGC	1 cut(s)	257
TspDTI	ATGAA	3 cut(s)	17, 254, 354
TspRI	CASTG	2 cut(s)	388, 474
Tth111I	GACNNNGTC	1 cut(s)	98
Van91I	CCANNNNNTGG	2 cut(s)	72, 191
VspI	ATTAAT	1 cut(s)	584
XapI	RAATTY	2 cut(s)	576, 598
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214
XmiI	GTMKAC	2 cut(s)	292, 318
XmnI	GAANNNNTTC	1 cut(s)	199
XspI	CTAG	2 cut(s)	23, 297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.