MD11G1316200.v1.1

BRCT domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0007323
Physical Location & Seq
Reverse (-)
42808194 .. 42809970
1777 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1316200.v1.1.491

Sequence Viewer

Length: 1158 bp
ATGAAGGAGAACAGGCCAACTGTTGGTGGAGATCAAACTGTAAGCAAGTCCAAACAGCAGGCAGAAAAATCAACAGCTAAATCTGATACAACTCCGTTGAAGATAATTCAAACATCTGTGGAGAGAAGTGACAATCCTTCAACACCTGAAGGGAAGGCTCCAAGCAAAGTTAAAATTGAACCTGTAAGGTTTATTCTGAGTGGGCACCGATTTCAAAGAAAGGAGTTTCAGAAAGTTATCAAGCGTTTGAAAGCAAAATGTTGCCGGGATTCTCATCACTGGTCTTACCAGGCAACGCACTTCATCTCTCCAGATCGAGTTGGCAGGACAGAGAAGTTTTTCGCAGCTGTAGCGTCTGGAAGGTGGATTCTTAAGAGTGATTATCTGGAAGCTAGTGATAAGGAAGGAAGGTTTTTGGAAGAAGAACCTTATGAATGGTACAAGAATGGCCTTGGTGAAGATGGTACCATCAATTTGGAGGCCCCAAGGAAGTGGCGGCTCTTGAGAGAGAGAACAGGCCATGGTGCTTTCCACGGAATGCGCATTATCATATATGGCGAATGTATTGCACCACCTTTGGATACTCTGAAGCGTGTCATGAAGGCTGGTGATGGAACAATTTTGGCGACTTCTCCTCCTTACACCCGCTTCCTTAAGTCGGGGGTTGACTATGCCATTGTCAGTCCAGGCATGCCCCGTGCTGATATGTGGGTACAAGAGTTGTTGAAGCATGAGATACCCTGCGTTGTGGCCGATTACTTGGTTGAGTACGTGTGCAAACCTGGGCACCGGCTTGACAGACACGTGCTATACAACACCAATGCGTGGGCGGAGAAGTCATTTGAGAGAGTACAGAGCAGGGCGGAGGACATGGTGGAGGAAGCGTTTACAGGTGAGGATGGTGATGATTCTAGTTGCAGCGATGGTAGTGATATAGCTTGCGTGGTGTGTGGGTGTGGGGAGAGAGGAGAGGTGATGTTGATATGCGGCAACGAAATTGGGAGCGTGGGGTGTGGAATTGGTACTCATATCGAGTGCTGCAATCCACCGCTTGAAAGTGTTCCGGAGGATGACTGGTTTTGTCCAAACTGTAGTTGGAGCAAAAACAGCACCAAATCTTCCAAGAAAAGGAAAATGGGTTTGTTGGTTGACAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
BRCT PHD PTCB-BRCT

Protein Analysis

386

Amino Acids

43.12

Weight (kDa)

7.1

Isoelectric Point (pI)

37.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RTT107_BRCT_5 PF16770 58 - 144 8.1e-06 Regulator of Ty1 transposition protein 107 BRCT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 542
Acc65I GGTACC 1 cut(s) 464
AccB1I GGYRCC 3 cut(s) 204, 464, 786
AccB7I CCANNNNNTGG 2 cut(s) 23, 825
AccIII TCCGGA 1 cut(s) 1063
AciI CCGC 6 cut(s) 496, 646, 830, 863, 987, 1049
AcoI YGGCCR 1 cut(s) 750
AcuI CTGAAG 2 cut(s) 168, 608
AcvI CACGTG 1 cut(s) 805
AfaI GTAC 6 cut(s) 440, 466, 714, 770, 852, 1024
AfiI CCNNNNNNNGG 4 cut(s) 23, 658, 825, 1128
AflII CTTAAG 2 cut(s) 371, 653
AflIII ACRYGT 2 cut(s) 771, 802
AgsI TTSAA 8 cut(s) 100, 110, 141, 179, 215, 250, 727, 1055
AjnI CCWGG 3 cut(s) 288, 685, 781
AluBI AGCT 4 cut(s) 77, 347, 392, 938
AluI AGCT 4 cut(s) 77, 347, 392, 938
Aor13HI TCCGGA 1 cut(s) 1063
AoxI GGCC 5 cut(s) 14, 448, 480, 517, 750
ApeKI GCWGC 3 cut(s) 344, 918, 1038
Asp700I GAANNNNTTC 2 cut(s) 338, 1059
Asp718I GGTACC 1 cut(s) 464
AspLEI GCGC 1 cut(s) 543
AspS9I GGNCC 1 cut(s) 481
AsuC2I CCSGG 1 cut(s) 266
AsuHPI GGTGA 5 cut(s) 467, 620, 905, 914, 985
BaeGI GKGCMC 2 cut(s) 207, 789
BaeI ACNNNNGTAYC 2 cut(s) 704, 737
BanI GGYRCC 3 cut(s) 204, 464, 786
BbrPI CACGTG 1 cut(s) 805
BbvI GCAGC 3 cut(s) 356, 930, 1025
BccI CCATC 5 cut(s) 455, 476, 605, 893, 917
BcgI CGANNNNNNTGC 2 cut(s) 548, 582
BciT130I CCWGG 3 cut(s) 290, 687, 783
BciVI GTATCC 1 cut(s) 574
BcnI CCSGG 1 cut(s) 266
BfaI CTAG 2 cut(s) 393, 912
BfmI CTRYAG 2 cut(s) 348, 1090
BfrI CTTAAG 2 cut(s) 371, 653
BfuI GTATCC 1 cut(s) 574
BisI GCNGC 5 cut(s) 345, 497, 919, 988, 1039
BlsI GCNGC 5 cut(s) 346, 498, 920, 989, 1040
Bme1390I CCNGG 4 cut(s) 266, 290, 687, 783
BmgT120I GGNCC 1 cut(s) 481
BmiI GGNNCC 5 cut(s) 159, 206, 466, 483, 788
BmrFI CCNGG 4 cut(s) 266, 290, 687, 783
BpmI CTGGAG 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 523
BpuMI CCSGG 1 cut(s) 266
BsaAI YACGTR 2 cut(s) 772, 805
BsaBI GATNNNNATC 1 cut(s) 273
BsaJI CCNNGG 5 cut(s) 451, 485, 520, 532, 782
BsaWI WCCGGW 1 cut(s) 1063
BsaXI ACNNNNNCTCC 4 cut(s) 619, 649, 869, 899
Bsc4I CCNNNNNNNGG 4 cut(s) 23, 658, 825, 1128
Bse118I RCCGGY 1 cut(s) 789
Bse1I ACTGG 2 cut(s) 284, 1079
Bse8I GATNNNNATC 1 cut(s) 273
BseAI TCCGGA 1 cut(s) 1063
BseBI CCWGG 3 cut(s) 290, 687, 783
BseDI CCNNGG 5 cut(s) 451, 485, 520, 532, 782
BseGI GGATG 2 cut(s) 904, 1075
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 4 cut(s) 23, 658, 825, 1128
BseMII CTCAG 1 cut(s) 188
BseNI ACTGG 2 cut(s) 284, 1079
BseRI GAGGAG 2 cut(s) 624, 981
BseSI GKGCMC 2 cut(s) 207, 789
BseXI GCAGC 3 cut(s) 356, 930, 1025
BshFI GGCC 5 cut(s) 16, 450, 482, 519, 752
BshNI GGYRCC 3 cut(s) 204, 464, 786
BsiSI CCGG 3 cut(s) 265, 790, 1064
BslI CCNNNNNNNGG 4 cut(s) 23, 658, 825, 1128
BsmI GAATGC 1 cut(s) 543
BsnI GGCC 5 cut(s) 16, 450, 482, 519, 752
Bsp1286I GDGCHC 2 cut(s) 207, 789
Bsp13I TCCGGA 1 cut(s) 1063
Bsp143I GATC 2 cut(s) 31, 313
Bsp19I CCATGG 1 cut(s) 520
BspACI CCGC 6 cut(s) 496, 646, 830, 863, 987, 1049
BspANI GGCC 5 cut(s) 16, 450, 482, 519, 752
BspCNI CTCAG 1 cut(s) 189
BspEI TCCGGA 1 cut(s) 1063
BspHI TCATGA 1 cut(s) 597
BspLI GGNNCC 5 cut(s) 159, 206, 466, 483, 788
BspT107I GGYRCC 3 cut(s) 204, 464, 786
BspTI CTTAAG 2 cut(s) 371, 653
BsrFI RCCGGY 1 cut(s) 789
BsrI ACTGG 2 cut(s) 284, 1079
BssAI RCCGGY 1 cut(s) 789
BssECI CCNNGG 5 cut(s) 451, 485, 520, 532, 782
BssMI GATC 2 cut(s) 31, 313
BssT1I CCWWGG 3 cut(s) 451, 485, 520
Bst2UI CCWGG 3 cut(s) 290, 687, 783
Bst4CI ACNGT 4 cut(s) 22, 40, 1091, 1154
BstAFI CTTAAG 2 cut(s) 371, 653
BstBAI YACGTR 2 cut(s) 772, 805
BstC8I GCNNGC 3 cut(s) 60, 692, 940
BstDEI CTNAG 1 cut(s) 197
BstDSI CCRYGG 2 cut(s) 520, 532
BstF5I GGATG 2 cut(s) 904, 1075
BstHHI GCGC 1 cut(s) 543
BstKTI GATC 2 cut(s) 34, 316
BstMBI GATC 2 cut(s) 31, 313
BstMWI GCNNNNNNNGC 2 cut(s) 350, 1107
BstNI CCWGG 3 cut(s) 290, 687, 783
BstNSI RCATGY 1 cut(s) 694
BstSCI CCNGG 4 cut(s) 264, 288, 685, 781
BstSFI CTRYAG 2 cut(s) 348, 1090
BstSLI GKGCMC 2 cut(s) 207, 789
BstV1I GCAGC 3 cut(s) 356, 930, 1025
BstXI CCANNNNNNTGG 2 cut(s) 475, 492
BsuI GTATCC 1 cut(s) 574
BsuRI GGCC 5 cut(s) 16, 450, 482, 519, 752
BtgI CCRYGG 2 cut(s) 520, 532
BtgZI GCGATG 1 cut(s) 936
BtsCI GGATG 2 cut(s) 904, 1075
BtsIMutI CAGTG 1 cut(s) 277
Cac8I GCNNGC 3 cut(s) 60, 692, 940
CciI TCATGA 1 cut(s) 597
CfoI GCGC 1 cut(s) 543
Cfr10I RCCGGY 1 cut(s) 789
Cfr13I GGNCC 1 cut(s) 481
CseI GACGC 1 cut(s) 342
Csp6I GTAC 6 cut(s) 439, 465, 713, 769, 851, 1023
CviAII CATG 5 cut(s) 521, 598, 691, 731, 871
CviQI GTAC 6 cut(s) 439, 465, 713, 769, 851, 1023
DdeI CTNAG 1 cut(s) 197
DpnI GATC 2 cut(s) 33, 315
DpnII GATC 2 cut(s) 31, 313
EaeI YGGCCR 1 cut(s) 750
EciI GGCGGA 2 cut(s) 845, 878
Eco130I CCWWGG 3 cut(s) 451, 485, 520
Eco57I CTGAAG 2 cut(s) 168, 608
Eco72I CACGTG 1 cut(s) 805
EcoO109I RGGNCCY 1 cut(s) 481
EcoRII CCWGG 3 cut(s) 288, 685, 781
EcoT14I CCWWGG 3 cut(s) 451, 485, 520
ErhI CCWWGG 3 cut(s) 451, 485, 520
FaeI CATG 5 cut(s) 524, 601, 694, 734, 874
FatI CATG 5 cut(s) 520, 597, 690, 730, 870
FauI CCCGC 1 cut(s) 653
Fnu4HI GCNGC 5 cut(s) 345, 497, 919, 988, 1039
FokI GGATG 2 cut(s) 911, 1082
Fsp4HI GCNGC 5 cut(s) 345, 497, 919, 988, 1039
FspAI RTGCGCAY 1 cut(s) 542
FspBI CTAG 2 cut(s) 393, 912
FspI TGCGCA 1 cut(s) 542
GlaI GCGC 1 cut(s) 542
GluI GCNGC 5 cut(s) 345, 497, 919, 988, 1039
GsuI CTGGAG 1 cut(s) 294
HaeIII GGCC 5 cut(s) 16, 450, 482, 519, 752
HapII CCGG 3 cut(s) 265, 790, 1064
HgaI GACGC 1 cut(s) 342
HhaI GCGC 1 cut(s) 543
Hin1II CATG 5 cut(s) 524, 601, 694, 734, 874
Hin6I GCGC 1 cut(s) 541
HinP1I GCGC 1 cut(s) 541
HincII GTYRAC 2 cut(s) 667, 1150
HindII GTYRAC 2 cut(s) 667, 1150
HinfI GANTC 3 cut(s) 269, 367, 908
HpaII CCGG 3 cut(s) 265, 790, 1064
HphI GGTGA 5 cut(s) 467, 620, 905, 914, 985
Hpy166II GTNNAC 3 cut(s) 667, 888, 1150
Hpy188I TCNGA 4 cut(s) 85, 198, 231, 588
Hpy188III TCNNGA 6 cut(s) 311, 357, 386, 502, 598, 1064
Hpy8I GTNNAC 3 cut(s) 667, 888, 1150
HpyAV CCTTC 7 cut(s) 143, 147, 148, 354, 398, 402, 595
HpyCH4III ACNGT 4 cut(s) 22, 40, 1091, 1154
HpyCH4IV ACGT 2 cut(s) 771, 804
HpyCH4V TGCA 4 cut(s) 569, 777, 918, 1041
HpyF10VI GCNNNNNNNGC 2 cut(s) 350, 1107
HpyF3I CTNAG 1 cut(s) 197
HpySE526I ACGT 2 cut(s) 771, 804
Hsp92II CATG 5 cut(s) 524, 601, 694, 734, 874
HspAI GCGC 1 cut(s) 541
Kpn2I TCCGGA 1 cut(s) 1063
KpnI GGTACC 1 cut(s) 468
Kzo9I GATC 2 cut(s) 31, 313
LmnI GCTCC 3 cut(s) 163, 1002, 1098
Lsp1109I GCAGC 3 cut(s) 356, 930, 1025
MaeI CTAG 2 cut(s) 393, 912
MaeII ACGT 2 cut(s) 771, 804
MaeIII GTNAC 1 cut(s) 128
MalI GATC 2 cut(s) 33, 315
MboI GATC 2 cut(s) 31, 313
MboII GAAGA 5 cut(s) 112, 431, 434, 470, 1110
MhlI GDGCHC 2 cut(s) 207, 789
MluCI AATT 6 cut(s) 105, 174, 472, 618, 996, 1017
MmeI TCCRAC 1 cut(s) 1076
MnlI CCTC 8 cut(s) 472, 645, 859, 871, 889, 959, 964, 1060
MroI TCCGGA 1 cut(s) 1063
MroXI GAANNNNTTC 2 cut(s) 338, 1059
MseI TTAA 4 cut(s) 171, 372, 654, 1156
MspA1I CMGCKG 1 cut(s) 347
MspCI CTTAAG 2 cut(s) 371, 653
MspI CCGG 3 cut(s) 265, 790, 1064
MspR9I CCNGG 4 cut(s) 266, 290, 687, 783
Mva1269I GAATGC 1 cut(s) 543
MvaI CCWGG 3 cut(s) 290, 687, 783
MwoI GCNNNNNNNGC 2 cut(s) 350, 1107
NciI CCSGG 1 cut(s) 266
NcoI CCATGG 1 cut(s) 520
NdeII GATC 2 cut(s) 31, 313
NlaIII CATG 5 cut(s) 524, 601, 694, 734, 874
NlaIV GGNNCC 5 cut(s) 159, 206, 466, 483, 788
NmuCI GTSAC 1 cut(s) 128
NsbI TGCGCA 1 cut(s) 542
NspI RCATGY 1 cut(s) 694
PaeI GCATGC 1 cut(s) 694
PagI TCATGA 1 cut(s) 597
PctI GAATGC 1 cut(s) 543
PdmI GAANNNNTTC 2 cut(s) 338, 1059
PfeI GAWTC 3 cut(s) 269, 367, 908
PflMI CCANNNNNTGG 2 cut(s) 23, 825
PkrI GCNGC 5 cut(s) 346, 498, 920, 989, 1040
PmaCI CACGTG 1 cut(s) 805
PmlI CACGTG 1 cut(s) 805
Ppu21I YACGTR 2 cut(s) 772, 805
Psp6I CCWGG 3 cut(s) 288, 685, 781
PspCI CACGTG 1 cut(s) 805
PspGI CCWGG 3 cut(s) 288, 685, 781
PspN4I GGNNCC 5 cut(s) 159, 206, 466, 483, 788
PspPI GGNCC 1 cut(s) 481
PvuII CAGCTG 1 cut(s) 347
RsaI GTAC 6 cut(s) 440, 466, 714, 770, 852, 1024
RsaNI GTAC 6 cut(s) 439, 465, 713, 769, 851, 1023
SaqAI TTAA 4 cut(s) 171, 372, 654, 1156
SatI GCNGC 5 cut(s) 345, 497, 919, 988, 1039
Sau3AI GATC 2 cut(s) 31, 313
Sau96I GGNCC 1 cut(s) 481
ScrFI CCNGG 4 cut(s) 266, 290, 687, 783
SduI GDGCHC 2 cut(s) 207, 789
SfcI CTRYAG 2 cut(s) 348, 1090
SmlI CTYRAG 3 cut(s) 371, 502, 653
SmoI CTYRAG 3 cut(s) 371, 502, 653
SphI GCATGC 1 cut(s) 694
Sse9I AATT 6 cut(s) 105, 174, 472, 618, 996, 1017
SsiI CCGC 6 cut(s) 496, 646, 830, 863, 987, 1049
SspMI CTAG 2 cut(s) 393, 912
StyD4I CCNGG 4 cut(s) 264, 288, 685, 781
StyI CCWWGG 3 cut(s) 451, 485, 520
TaaI ACNGT 4 cut(s) 22, 40, 1091, 1154
TaiI ACGT 2 cut(s) 774, 807
TaqI TCGA 2 cut(s) 316, 1032
TasI AATT 6 cut(s) 105, 174, 472, 618, 996, 1017
TatI WGTACW 1 cut(s) 850
TauI GCSGC 2 cut(s) 499, 990
TfiI GAWTC 3 cut(s) 269, 367, 908
Tru1I TTAA 4 cut(s) 171, 372, 654, 1156
Tru9I TTAA 4 cut(s) 171, 372, 654, 1156
TscAI CASTG 1 cut(s) 284
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 3 cut(s) 344, 918, 1038
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 4 cut(s) 17, 292, 447, 614
TspGWI ACGGA 2 cut(s) 84, 549
TspRI CASTG 1 cut(s) 284
Van91I CCANNNNNTGG 2 cut(s) 23, 825
Vha464I CTTAAG 2 cut(s) 371, 653
XceI RCATGY 1 cut(s) 694
XcmI CCANNNNNNNNNTGG 1 cut(s) 1092
XmnI GAANNNNTTC 2 cut(s) 338, 1059
XspI CTAG 2 cut(s) 393, 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.