Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8474925.1

Orthogroup ID

OG0007323

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1802

Gene Structure 1802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8474925.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

tccgagccctgtgtccgtggtgatttaatggcctcagtggaaaagataaaaggaaatgaacaaggagagtcagtttctatgctggttgattcaaccttgaaaggagatggtgctaaaggaaagaagaactatgggaaaaagcgtcctttgggcagaaccaagttgaagacatctcctaccgccactgagactgagagcactgaggagacagagatggaagaggaaggacttgcatgtccagtaggcaaatctaagtgctgcagtgaacccaaaagtaagccagtggactcgtctgaactgaaggaaaacaggccaattgcttgtggagatcaaaatataagcaaggcaaaagagcaagcagaaaaatcacatgttaaatgtaattatactccaatggagatcaatcaaaagttggcgaagatcagtcggaattcttcaatgcaagaggtgaaggcttcagacagagttaaaactcaacctgaatggtttattttgagtggacatcagtttgaaagaaaggagtttcagcaaattatcaagcgcttgaagggaaggtgctgccgtgattcacataactggtcttaccaggcgacacatttcatcattccagaaccaattcgcaggatagaaaagttttttgctgctgcagcatctggaaggtggattcttaaaagtgattatttggcagctagtaatcaggcaggaaaatttgtggctgaggaaccttatgaatggtacaagagtggcctaagtgaagatggcacaatcaatttagaggctccaagaaagtggcggctcttgagagagagaacaggtcatggtgcctttcatggaatgcgcattattatatatggcgactgcattgcaccacgtctggatactctgaagcgcgtggtgaaggctggtgatgggacaatattagcaacttgtcctccttacacccgcttccttaactcaggagtcgactttgccattgttagcccaggcatgccgcgtgtggatatgtgggtacaggagtttttaaaacatgagataccctgtgttgtagctgattacttggtcgagtatgtgtgcaaacctggatacccccttgagagacatgtgctatacaatactcatgcttgggcagaaaagtcatttggccgtctgcaaaacaaggccgaagaggttttggttgtggtggaggaagaggaggagaaccgtacatatacacctatggatgattctggtaacagtgatataccctgcgtggtttgcaggtcttgtgacagaggagaggtgatgctgatatgtggcaacgaaagtggctctgttggctgtgggattggcactcatattgactgctgcagtccgccacttgaagatgttccagagggtgactggttctgtccacagtgtcgtagccaaagcaaaaacgccagtaatccctctaagaaaaggaaaaagggtaagagcaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

BRCT PHD PTCB-BRCT

Protein Analysis

486

Amino Acids

54.42

Weight (kDa)

8.24

Isoelectric Point (pI)

41.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02110 AT4G02110
fragaria_vesca	FvH4_5g39450 FvH4_5g39450 FvH4_5g39450 FvH4_5g39450
malus_domestica	MD03G1296700.v1.1 MD11G1316200.v1.1 MD11G1316300.v1.1
prunus_persica	Prupe.8G270500_v2.0.a1 Prupe.8G270500_v2.0.a1
pyrus_communis	pycom03g23520 pycom11g27600
rosa_chinensis	RchiOBHm_Chr7g0241761
rosa_laevigata	RLG00000000546
rosa_multiflora	Rmu_co8474925.1_g000001 Rmu_sc0010095.1_g000004
rosa_roxburghii	Rroxscaffold_3G00218690
rosa_rugosa	Rorug07G0346900 Rorug07G0347000
rosa_samantha	Rh7AG501500 Rh7BG472800 Rh7CG517800 Rh7DG486600
rosa_wichuraiana	Rw7G042390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	234
Acc16I	TGCGCA	1 cut(s)	839
Acc36I	ACCTGC	1 cut(s)	1248
AccB1I	GGYRCC	1 cut(s)	821
AccI	GTMKAC	1 cut(s)	963
AccII	CGCG	2 cut(s)	891, 994
AciI	CCGC	5 cut(s)	180, 793, 943, 992, 1352
AcoI	YGGCCR	1 cut(s)	1141
AcsI	RAATTY	2 cut(s)	430, 707
AcuI	CTGAAG	3 cut(s)	320, 441, 905
AfaI	GTAC	3 cut(s)	737, 1011, 1204
AfeI	AGCGCT	1 cut(s)	542
AflIII	ACRYGT	2 cut(s)	370, 1099
AgsI	TTSAA	7 cut(s)	93, 100, 166, 438, 512, 547, 1361
AjiI	CACGTC	1 cut(s)	872
AjnI	CCWGG	3 cut(s)	585, 982, 1078
AjuI	GAANNNNNNNTTGG	2 cut(s)	1122, 1154
AluBI	AGCT	2 cut(s)	689, 1049
AluI	AGCT	2 cut(s)	689, 1049
Alw21I	GWGCWC	1 cut(s)	200
Alw26I	GTCTC	3 cut(s)	182, 200, 1090
AlwNI	CAGNNNCTG	1 cut(s)	653
Aor51HI	AGCGCT	1 cut(s)	542
AoxI	GGCC	5 cut(s)	30, 311, 745, 1141, 1158
ApeKI	GCWGC	7 cut(s)	258, 558, 641, 644, 647, 686, 1344
ApoI	RAATTY	2 cut(s)	430, 707
Asp700I	GAANNNNTTC	2 cut(s)	615, 1365
AspLEI	GCGC	3 cut(s)	543, 840, 891
AsuHPI	GGTGA	6 cut(s)	32, 460, 907, 917, 1291, 1388
BaeI	ACNNNNGTAYC	4 cut(s)	727, 760, 1001, 1034
BanI	GGYRCC	1 cut(s)	821
BanII	GRGCYC	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	173
Bbv12I	GWGCWC	1 cut(s)	200
BbvCI	CCTCAGC	1 cut(s)	717
BbvI	GCAGC	7 cut(s)	245, 545, 628, 631, 659, 698, 1331
BccI	CCATC	4 cut(s)	101, 208, 752, 902
BceAI	ACGGC	2 cut(s)	546, 1128
BcgI	CGANNNNNNTGC	2 cut(s)	845, 879
BciT130I	CCWGG	3 cut(s)	587, 984, 1080
BciVI	GTATCC	2 cut(s)	871, 1076
BcoDI	GTCTC	3 cut(s)	182, 200, 1090
BfaI	CTAG	1 cut(s)	690
BfmI	CTRYAG	3 cut(s)	259, 645, 1345
BfoI	RGCGCY	1 cut(s)	544
BfuAI	ACCTGC	1 cut(s)	1248
BfuI	GTATCC	2 cut(s)	871, 1076
BisI	GCNGC	9 cut(s)	259, 559, 642, 645, 648, 687, 794, 992, 1345
BlsI	GCNGC	9 cut(s)	260, 560, 643, 646, 649, 688, 795, 993, 1346
Bme1390I	CCNGG	3 cut(s)	587, 984, 1080
BmgBI	CACGTC	1 cut(s)	872
BmiI	GGNNCC	3 cut(s)	723, 780, 823
BmrFI	CCNGG	3 cut(s)	587, 984, 1080
BmsI	GCATC	2 cut(s)	659, 1272
BpiI	GAAGAC	1 cut(s)	173
Bpu10I	CCTNAGC	1 cut(s)	717
BpuEI	CTTGAG	2 cut(s)	820, 1112
BsaJI	CCNNGG	2 cut(s)	16, 982
BsaXI	ACNNNNNCTCC	4 cut(s)	57, 87, 916, 946
Bse1I	ACTGG	5 cut(s)	239, 281, 581, 1385, 1419
Bse3DI	GCAATG	1 cut(s)	861
BseBI	CCWGG	3 cut(s)	587, 984, 1080
BseDI	CCNNGG	2 cut(s)	16, 982
BseGI	GGATG	1 cut(s)	1225
BseMI	GCAATG	1 cut(s)	861
BseMII	CTCAG	6 cut(s)	48, 177, 183, 192, 708, 969
BseNI	ACTGG	5 cut(s)	239, 281, 581, 1385, 1419
BseRI	GAGGAG	4 cut(s)	218, 1205, 1208, 1287
BseXI	GCAGC	7 cut(s)	245, 545, 628, 631, 659, 698, 1331
Bsh1236I	CGCG	2 cut(s)	891, 994
BshFI	GGCC	5 cut(s)	32, 313, 747, 1143, 1160
BshNI	GGYRCC	1 cut(s)	821
BsiHKAI	GWGCWC	1 cut(s)	200
BslFI	GGGAC	1 cut(s)	925
BsmAI	GTCTC	3 cut(s)	182, 200, 1090
BsmFI	GGGAC	1 cut(s)	925
BsmI	GAATGC	1 cut(s)	840
BsnI	GGCC	5 cut(s)	32, 313, 747, 1143, 1160
Bsp1286I	GDGCHC	2 cut(s)	9, 200
Bsp143I	GATC	3 cut(s)	328, 399, 420
BspACI	CCGC	5 cut(s)	180, 793, 943, 992, 1352
BspANI	GGCC	5 cut(s)	32, 313, 747, 1143, 1160
BspCNI	CTCAG	6 cut(s)	47, 178, 184, 193, 709, 968
BspFNI	CGCG	2 cut(s)	891, 994
BspLI	GGNNCC	3 cut(s)	723, 780, 823
BspMAI	CTGCAG	3 cut(s)	263, 649, 1349
BspMI	ACCTGC	1 cut(s)	1248
BspT107I	GGYRCC	1 cut(s)	821
BsrDI	GCAATG	1 cut(s)	861
BsrI	ACTGG	5 cut(s)	239, 281, 581, 1385, 1419
BssECI	CCNNGG	2 cut(s)	16, 982
BssMI	GATC	3 cut(s)	328, 399, 420
Bst2UI	CCWGG	3 cut(s)	587, 984, 1080
Bst4CI	ACNGT	3 cut(s)	1202, 1235, 1395
Bst6I	CTCTTC	3 cut(s)	213, 1158, 1182
BstC8I	GCNNGC	2 cut(s)	357, 989
BstDEI	CTNAG	9 cut(s)	34, 186, 192, 201, 252, 717, 749, 955, 1431
BstDSI	CCRYGG	1 cut(s)	16
BstF5I	GGATG	1 cut(s)	1225
BstFNI	CGCG	2 cut(s)	891, 994
BstH2I	RGCGCY	1 cut(s)	544
BstHHI	GCGC	3 cut(s)	543, 840, 891
BstKTI	GATC	3 cut(s)	331, 402, 423
BstMAI	GTCTC	3 cut(s)	182, 200, 1090
BstMBI	GATC	3 cut(s)	328, 399, 420
BstMWI	GCNNNNNNNGC	3 cut(s)	647, 1254, 1314
BstNI	CCWGG	3 cut(s)	587, 984, 1080
BstNSI	RCATGY	4 cut(s)	237, 374, 991, 1103
BstSCI	CCNGG	3 cut(s)	585, 982, 1078
BstSFI	CTRYAG	3 cut(s)	259, 645, 1345
BstUI	CGCG	2 cut(s)	891, 994
BstV1I	GCAGC	7 cut(s)	245, 545, 628, 631, 659, 698, 1331
BstV2I	GAAGAC	1 cut(s)	173
BstXI	CCANNNNNNTGG	1 cut(s)	789
BsuI	GTATCC	2 cut(s)	871, 1076
BsuRI	GGCC	5 cut(s)	32, 313, 747, 1143, 1160
BtgI	CCRYGG	1 cut(s)	16
BtrI	CACGTC	1 cut(s)	872
BtsCI	GGATG	1 cut(s)	1225
BtsI	GCAGTG	1 cut(s)	268
BtsIMutI	CAGTG	7 cut(s)	42, 183, 198, 268, 288, 1240, 1400
BveI	ACCTGC	1 cut(s)	1248
Cac8I	GCNNGC	2 cut(s)	357, 989
CaiI	CAGNNNCTG	1 cut(s)	653
CfoI	GCGC	3 cut(s)	543, 840, 891
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	3 cut(s)	736, 1010, 1203
CspCI	CAANNNNNGTGG	2 cut(s)	1285, 1320
CviAII	CATG	8 cut(s)	234, 371, 818, 830, 988, 1028, 1100, 1118
CviQI	GTAC	3 cut(s)	736, 1010, 1203
DdeI	CTNAG	9 cut(s)	34, 186, 192, 201, 252, 717, 749, 955, 1431
DpnI	GATC	3 cut(s)	330, 401, 422
DpnII	GATC	3 cut(s)	328, 399, 420
DraI	TTTAAA	1 cut(s)	1023
DrdI	GACNNNNNNGTC	1 cut(s)	234
DseDI	GACNNNNNNGTC	1 cut(s)	234
EaeI	YGGCCR	1 cut(s)	1141
Eam1104I	CTCTTC	3 cut(s)	213, 1158, 1182
EarI	CTCTTC	3 cut(s)	213, 1158, 1182
EciI	GGCGGA	1 cut(s)	1341
Eco24I	GRGCYC	1 cut(s)	9
Eco47III	AGCGCT	1 cut(s)	542
Eco57I	CTGAAG	3 cut(s)	320, 441, 905
EcoRI	GAATTC	1 cut(s)	430
EcoRII	CCWGG	3 cut(s)	585, 982, 1078
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	8 cut(s)	237, 374, 821, 833, 991, 1031, 1103, 1121
FaqI	GGGAC	1 cut(s)	925
FatI	CATG	8 cut(s)	233, 370, 817, 829, 987, 1027, 1099, 1117
FauI	CCCGC	1 cut(s)	950
FblI	GTMKAC	1 cut(s)	963
Fnu4HI	GCNGC	9 cut(s)	259, 559, 642, 645, 648, 687, 794, 992, 1345
FokI	GGATG	1 cut(s)	1232
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	9 cut(s)	259, 559, 642, 645, 648, 687, 794, 992, 1345
FspAI	RTGCGCAY	1 cut(s)	839
FspBI	CTAG	1 cut(s)	690
FspI	TGCGCA	1 cut(s)	839
GlaI	GCGC	3 cut(s)	542, 839, 890
GluI	GCNGC	9 cut(s)	259, 559, 642, 645, 648, 687, 794, 992, 1345
HaeII	RGCGCY	1 cut(s)	544
HaeIII	GGCC	5 cut(s)	32, 313, 747, 1143, 1160
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	3 cut(s)	543, 840, 891
Hin1II	CATG	8 cut(s)	237, 374, 821, 833, 991, 1031, 1103, 1121
Hin6I	GCGC	3 cut(s)	541, 838, 889
HinP1I	GCGC	3 cut(s)	541, 838, 889
HincII	GTYRAC	1 cut(s)	964
HindII	GTYRAC	1 cut(s)	964
HinfI	GANTC	7 cut(s)	68, 89, 287, 566, 664, 960, 1223
HphI	GGTGA	6 cut(s)	32, 460, 907, 917, 1291, 1388
Hpy166II	GTNNAC	5 cut(s)	266, 286, 500, 964, 1391
Hpy188I	TCNGA	5 cut(s)	4, 295, 429, 460, 885
Hpy188III	TCNNGA	6 cut(s)	608, 654, 799, 875, 957, 1370
Hpy8I	GTNNAC	5 cut(s)	266, 286, 500, 964, 1391
HpyAV	CCTTC	7 cut(s)	218, 295, 445, 541, 546, 651, 892
HpyCH4III	ACNGT	3 cut(s)	1202, 1235, 1395
HpyCH4IV	ACGT	1 cut(s)	871
HpyF10VI	GCNNNNNNNGC	3 cut(s)	647, 1254, 1314
HpyF3I	CTNAG	9 cut(s)	34, 186, 192, 201, 252, 717, 749, 955, 1431
HpySE526I	ACGT	1 cut(s)	871
Hsp92II	CATG	8 cut(s)	237, 374, 821, 833, 991, 1031, 1103, 1121
HspAI	GCGC	3 cut(s)	541, 838, 889
Kzo9I	GATC	3 cut(s)	328, 399, 420
LmnI	GCTCC	1 cut(s)	784
Lsp1109I	GCAGC	7 cut(s)	245, 545, 628, 631, 659, 698, 1331
LweI	GCATC	2 cut(s)	659, 1272
MaeI	CTAG	1 cut(s)	690
MaeII	ACGT	1 cut(s)	871
MaeIII	GTNAC	3 cut(s)	1229, 1265, 1376
MalI	GATC	3 cut(s)	330, 401, 422
MboI	GATC	3 cut(s)	328, 399, 420
MboII	GAAGA	9 cut(s)	136, 178, 230, 426, 430, 767, 1175, 1199, 1373
MfeI	CAATTG	1 cut(s)	315
MhlI	GDGCHC	2 cut(s)	9, 200
MluCI	AATT	7 cut(s)	315, 382, 430, 531, 615, 707, 769
MlyI	GAGTC	3 cut(s)	77, 281, 969
MmeI	TCCRAC	1 cut(s)	407
MroXI	GAANNNNTTC	2 cut(s)	615, 1365
MseI	TTAA	6 cut(s)	26, 375, 468, 669, 951, 1022
MspR9I	CCNGG	3 cut(s)	587, 984, 1080
MunI	CAATTG	1 cut(s)	315
Mva1269I	GAATGC	1 cut(s)	840
MvaI	CCWGG	3 cut(s)	587, 984, 1080
MvnI	CGCG	2 cut(s)	891, 994
MwoI	GCNNNNNNNGC	3 cut(s)	647, 1254, 1314
NdeII	GATC	3 cut(s)	328, 399, 420
NlaIII	CATG	8 cut(s)	237, 374, 821, 833, 991, 1031, 1103, 1121
NlaIV	GGNNCC	3 cut(s)	723, 780, 823
NmuCI	GTSAC	2 cut(s)	1265, 1376
NsbI	TGCGCA	1 cut(s)	839
NspI	RCATGY	4 cut(s)	237, 374, 991, 1103
PaeI	GCATGC	1 cut(s)	991
PciI	ACATGT	2 cut(s)	370, 1099
PctI	GAATGC	1 cut(s)	840
PdmI	GAANNNNTTC	2 cut(s)	615, 1365
PfeI	GAWTC	4 cut(s)	89, 566, 664, 1223
PkrI	GCNGC	9 cut(s)	260, 560, 643, 646, 649, 688, 795, 993, 1346
PleI	GAGTC	3 cut(s)	76, 281, 968
PpsI	GAGTC	3 cut(s)	76, 281, 968
PscI	ACATGT	2 cut(s)	370, 1099
Psp6I	CCWGG	3 cut(s)	585, 982, 1078
PspGI	CCWGG	3 cut(s)	585, 982, 1078
PspN4I	GGNNCC	3 cut(s)	723, 780, 823
PstI	CTGCAG	3 cut(s)	263, 649, 1349
PstNI	CAGNNNCTG	1 cut(s)	653
RsaI	GTAC	3 cut(s)	737, 1011, 1204
RsaNI	GTAC	3 cut(s)	736, 1010, 1203
SalI	GTCGAC	1 cut(s)	962
SaqAI	TTAA	6 cut(s)	26, 375, 468, 669, 951, 1022
SatI	GCNGC	9 cut(s)	259, 559, 642, 645, 648, 687, 794, 992, 1345
Sau3AI	GATC	3 cut(s)	328, 399, 420
SchI	GAGTC	3 cut(s)	77, 281, 969
ScrFI	CCNGG	3 cut(s)	587, 984, 1080
SduI	GDGCHC	2 cut(s)	9, 200
SfaNI	GCATC	2 cut(s)	659, 1272
SfcI	CTRYAG	3 cut(s)	259, 645, 1345
SmlI	CTYRAG	2 cut(s)	799, 1091
SmoI	CTYRAG	2 cut(s)	799, 1091
SphI	GCATGC	1 cut(s)	991
Sse9I	AATT	7 cut(s)	315, 382, 430, 531, 615, 707, 769
SsiI	CCGC	5 cut(s)	180, 793, 943, 992, 1352
SspI	AATATT	1 cut(s)	918
SspMI	CTAG	1 cut(s)	690
StyD4I	CCNGG	3 cut(s)	585, 982, 1078
TaaI	ACNGT	3 cut(s)	1202, 1235, 1395
TaiI	ACGT	1 cut(s)	874
TaqI	TCGA	2 cut(s)	963, 1062
TasI	AATT	7 cut(s)	315, 382, 430, 531, 615, 707, 769
TauI	GCSGC	2 cut(s)	796, 994
TfiI	GAWTC	4 cut(s)	89, 566, 664, 1223
Tru1I	TTAA	6 cut(s)	26, 375, 468, 669, 951, 1022
Tru9I	TTAA	6 cut(s)	26, 375, 468, 669, 951, 1022
TscAI	CASTG	7 cut(s)	42, 190, 205, 268, 288, 1240, 1400
TseFI	GTSAC	2 cut(s)	1265, 1376
TseI	GCWGC	7 cut(s)	258, 558, 641, 644, 647, 686, 1344
Tsp45I	GTSAC	2 cut(s)	1265, 1376
TspDTI	ATGAA	4 cut(s)	72, 589, 744, 818
TspGWI	ACGGA	1 cut(s)	5
TspRI	CASTG	7 cut(s)	42, 190, 205, 268, 288, 1240, 1400
XapI	RAATTY	2 cut(s)	430, 707
XceI	RCATGY	4 cut(s)	237, 374, 991, 1103
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1377
XmiI	GTMKAC	1 cut(s)	963
XmnI	GAANNNNTTC	2 cut(s)	615, 1365
XspI	CTAG	1 cut(s)	690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.