MD11G1316300.v1.1

BRCT domain-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Reverse (-)
42810891 .. 42813390
2500 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1316300.v1.1.491

Sequence Viewer

Length: 1386 bp
ATGACGGGGGGAGGTTCAACGCCCGAGACGTTTGCCGGCGTACGTTTCCTTCTCTTGGGATTTGACACCTTTGACGAGCACCAGGTTCGATCTAAGCTTGTAGATTGCGGCGGAGTGGATGTTGCCCACTACTCCCCCAATTGTACCCACGTCATTGTCGATAAAATTGTGTATGATGATCCCGTTTGTGTTGCTGCTCGAAATGACGCCAAGACGCTCGTCACCGCTTTATGGGTCCATCATAGTTTTGATGTTGGACTCCCCGTTGATCCCGCTTCGATTATATACAGACCTCTTAGAGATTTGAATGGTATTCCGGATGCCAAGGGACTTATTGTATGCTTGACTGGATATCAACGACAAGATAGAGATGACATTATGATTTGTTTCATGAGGGAGAAGTACGAACTTGCCAAGAAAATCCCAAAGATGAAGCTGGTGTATCATTGGTTGGAAGATTGCTTAAGGGATTGGCAACTTCTTCCAGAAGATACTTACAACACTAGTGGGTATGAACTGGAGATGATGGAGGCTGAGGCTAGAGATTCAGAAGATGAGGCTGAAAACACATTTGTGAAGCAAGCTGGGGTGAGAACACTGAGAAGCATGTATAAGAGTCCTCACAATATAAAAGCTGGCTCACCAACAACACCTAGATTGCCTACACCAGAAGGAGAGATGCCTAATGTTCCCTTGGTTTTTAATAATGCCATTGGCAACTTATCAATTCCTCGGAATGAGAATAAATTGGATCAAGCCTCAAGCGTTTCTAATTCTTATGTTTCCAAGGGATTAAGATGTCAGGATGCATGCCAGTTGAGGGCTGCTAGTGGCCGTGACCTAAATGATCAACATCACGGAACCCCTGATCCTAAGGTGAGAGATGATTTCATAATTAATTGTGGTTCTGCTGAAAGGGCTTCTCACTTGGCTGGGAAATTAAGCTACTCAAGGCAAACCTCATGGAGGCCAACACTTCCATTACACATGGGAAATAAATCAGGCGGTGGTAGTGTGTCTTCTAAAGTACCTATTCGCAAATTAAATGCCAATGATGATTTGGCCTCTTATACTTTGAAAGCAGATCAAGCAGATGAAAAATTTGACTCCAATTGTGTTGAAGTCCCTTTAAAAGATACTAATTTACAGAACAGAGAAGAGTCAAGTGGTATATTTCCTCGGAAAAGGGTGATGGATCTCTCTTATACTAGCTCCAAATCACAGAAGATGAATCCGGGTGCAAAATCAGGTAGCATGCATAGTCCTTCATCTAGTATTAGATCTCCAAAAGTAAAGCCTACATCTTTGATTGATGGTTCATGGAGACTACTAGCCATTATATCGTTGCAAAAGATGACCACTCTCTGGATAAAACTGGCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

462

Amino Acids

51.17

Weight (kDa)

7.58

Isoelectric Point (pI)

39.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1365
AccIII TCCGGA 1 cut(s) 316
AciI CCGC 5 cut(s) 108, 111, 225, 273, 1005
AclWI GGATC 5 cut(s) 173, 263, 759, 863, 1203
AcoI YGGCCR 1 cut(s) 832
AcsI RAATTY 1 cut(s) 1100
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 4 cut(s) 42, 145, 404, 1029
AfiI CCNNNNNNNGG 5 cut(s) 55, 231, 820, 966, 1365
AflII CTTAAG 1 cut(s) 463
AgsI TTSAA 4 cut(s) 18, 307, 1078, 1121
AhlI ACTAGT 1 cut(s) 503
AjiI CACGTC 1 cut(s) 151
AjnI CCWGG 1 cut(s) 81
AleI CACNNNNGTG 1 cut(s) 572
AloI GAACNNNNNNTCC 2 cut(s) 853, 885
AluBI AGCT 6 cut(s) 97, 436, 584, 635, 945, 1212
AluI AGCT 6 cut(s) 97, 436, 584, 635, 945, 1212
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 2 cut(s) 20, 1318
AlwI GGATC 5 cut(s) 173, 263, 759, 863, 1203
Ama87I CYCGRG 1 cut(s) 23
Aor13HI TCCGGA 1 cut(s) 316
AoxI GGCC 3 cut(s) 832, 968, 1062
ApeKI GCWGC 2 cut(s) 194, 824
ApoI RAATTY 1 cut(s) 1100
AseI ATTAAT 1 cut(s) 897
AspS9I GGNCC 1 cut(s) 235
AsuC2I CCSGG 1 cut(s) 1236
AsuHPI GGTGA 5 cut(s) 214, 601, 633, 889, 1201
AvaI CYCGRG 1 cut(s) 23
AvaII GGWCC 1 cut(s) 235
AxyI CCTNAGG 1 cut(s) 873
BarI GAAGNNNNNNTAC 4 cut(s) 33, 65, 1003, 1035
BbsI GAAGAC 1 cut(s) 1011
Bbv12I GWGCWC 1 cut(s) 81
BbvCI CCTCAGC 1 cut(s) 534
BbvI GCAGC 2 cut(s) 181, 811
BccI CCATC 4 cut(s) 246, 520, 1186, 1307
BceAI ACGGC 1 cut(s) 819
BcgI CGANNNNNNTGC 4 cut(s) 14, 48, 68, 102
BciT130I CCWGG 1 cut(s) 83
BclI TGATCA 1 cut(s) 847
BcnI CCSGG 1 cut(s) 1236
BcoDI GTCTC 2 cut(s) 20, 1318
BcuI ACTAGT 1 cut(s) 503
BfaI CTAG 7 cut(s) 504, 540, 654, 828, 1209, 1272, 1331
BfrI CTTAAG 1 cut(s) 463
BglII AGATCT 1 cut(s) 1280
BisI GCNGC 3 cut(s) 109, 195, 825
BlsI GCNGC 3 cut(s) 110, 196, 826
Bme1390I CCNGG 2 cut(s) 83, 1236
Bme18I GGWCC 1 cut(s) 235
BmeT110I CYCGRG 1 cut(s) 23
BmgBI CACGTC 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 2 cut(s) 236, 862
BmrFI CCNGG 2 cut(s) 83, 1236
BmsI GCATC 3 cut(s) 310, 669, 796
BoxI GACNNNNGTC 1 cut(s) 218
BpiI GAAGAC 1 cut(s) 1011
BpmI CTGGAG 1 cut(s) 539
Bpu10I CCTNAGC 1 cut(s) 534
BpuEI CTTGAG 2 cut(s) 745, 934
BpuMI CCSGG 1 cut(s) 1236
BsaBI GATNNNNATC 1 cut(s) 852
BsaHI GRCGYC 1 cut(s) 207
BsaJI CCNNGG 5 cut(s) 324, 693, 731, 786, 1178
BsaWI WCCGGW 1 cut(s) 316
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bsc4I CCNNNNNNNGG 5 cut(s) 55, 231, 820, 966, 1365
Bse118I RCCGGY 1 cut(s) 35
Bse1I ACTGG 4 cut(s) 352, 522, 814, 1380
Bse21I CCTNAGG 1 cut(s) 873
Bse8I GATNNNNATC 1 cut(s) 852
BseAI TCCGGA 1 cut(s) 316
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 5 cut(s) 324, 693, 731, 786, 1178
BseGI GGATG 3 cut(s) 124, 325, 811
BseJI GATNNNNATC 1 cut(s) 852
BseLI CCNNNNNNNGG 5 cut(s) 55, 231, 820, 966, 1365
BseMII CTCAG 2 cut(s) 525, 590
BseNI ACTGG 4 cut(s) 352, 522, 814, 1380
BseXI GCAGC 2 cut(s) 181, 811
BseYI CCCAGC 2 cut(s) 584, 932
BshFI GGCC 3 cut(s) 834, 970, 1064
BsiHKAI GWGCWC 1 cut(s) 81
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 3 cut(s) 36, 317, 1235
BsiWI CGTACG 1 cut(s) 40
BslFI GGGAC 2 cut(s) 342, 1109
BslI CCNNNNNNNGG 5 cut(s) 55, 231, 820, 966, 1365
BsmAI GTCTC 2 cut(s) 20, 1318
BsmBI CGTCTC 1 cut(s) 20
BsmFI GGGAC 2 cut(s) 342, 1109
BsnI GGCC 3 cut(s) 834, 970, 1064
BsoBI CYCGRG 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 81
Bsp13I TCCGGA 1 cut(s) 316
Bsp143I GATC 9 cut(s) 89, 178, 268, 751, 847, 868, 1084, 1195, 1280
BspACI CCGC 5 cut(s) 108, 111, 225, 273, 1005
BspANI GGCC 3 cut(s) 834, 970, 1064
BspCNI CTCAG 2 cut(s) 526, 591
BspEI TCCGGA 1 cut(s) 316
BspHI TCATGA 1 cut(s) 390
BspLI GGNNCC 2 cut(s) 236, 862
BspPI GGATC 5 cut(s) 173, 263, 759, 863, 1203
BspTI CTTAAG 1 cut(s) 463
BsrFI RCCGGY 1 cut(s) 35
BsrI ACTGG 4 cut(s) 352, 522, 814, 1380
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 5 cut(s) 324, 693, 731, 786, 1178
BssMI GATC 9 cut(s) 89, 178, 268, 751, 847, 868, 1084, 1195, 1280
BssNI GRCGYC 1 cut(s) 207
BssT1I CCWWGG 3 cut(s) 324, 693, 786
Bst2UI CCWGG 1 cut(s) 83
Bst6I CTCTTC 1 cut(s) 1152
BstACI GRCGYC 1 cut(s) 207
BstAFI CTTAAG 1 cut(s) 463
BstC8I GCNNGC 5 cut(s) 37, 582, 637, 811, 1256
BstDEI CTNAG 5 cut(s) 93, 296, 534, 599, 873
BstENI CCTNNNNNAGG 1 cut(s) 964
BstF5I GGATG 3 cut(s) 124, 325, 811
BstKTI GATC 9 cut(s) 92, 181, 271, 754, 850, 871, 1087, 1198, 1283
BstMAI GTCTC 2 cut(s) 20, 1318
BstMBI GATC 9 cut(s) 89, 178, 268, 751, 847, 868, 1084, 1195, 1280
BstMWI GCNNNNNNNGC 2 cut(s) 917, 1088
BstNI CCWGG 1 cut(s) 83
BstNSI RCATGY 3 cut(s) 610, 813, 1258
BstPAI GACNNNNGTC 1 cut(s) 218
BstSCI CCNGG 2 cut(s) 81, 1234
BstV1I GCAGC 2 cut(s) 181, 811
BstV2I GAAGAC 1 cut(s) 1011
BstX2I RGATCY 2 cut(s) 1195, 1280
BstYI RGATCY 2 cut(s) 1195, 1280
Bsu36I CCTNAGG 1 cut(s) 873
BsuRI GGCC 3 cut(s) 834, 970, 1064
BtrI CACGTC 1 cut(s) 151
BtsCI GGATG 3 cut(s) 124, 325, 811
BtsIMutI CAGTG 1 cut(s) 596
Cac8I GCNNGC 5 cut(s) 37, 582, 637, 811, 1256
CciI TCATGA 1 cut(s) 390
Cfr10I RCCGGY 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 235
CseI GACGC 2 cut(s) 215, 223
CsiI ACCWGGT 1 cut(s) 81
Csp6I GTAC 4 cut(s) 41, 144, 403, 1028
CspCI CAANNNNNGTGG 2 cut(s) 487, 522
CviAII CATG 7 cut(s) 391, 607, 810, 963, 988, 1255, 1320
CviQI GTAC 4 cut(s) 41, 144, 403, 1028
DdeI CTNAG 5 cut(s) 93, 296, 534, 599, 873
DpnI GATC 9 cut(s) 91, 180, 270, 753, 849, 870, 1086, 1197, 1282
DpnII GATC 9 cut(s) 89, 178, 268, 751, 847, 868, 1084, 1195, 1280
DraI TTTAAA 1 cut(s) 1131
EaeI YGGCCR 1 cut(s) 832
Eam1104I CTCTTC 1 cut(s) 1152
EarI CTCTTC 1 cut(s) 1152
EciI GGCGGA 1 cut(s) 126
Eco130I CCWWGG 3 cut(s) 324, 693, 786
Eco32I GATATC 1 cut(s) 353
Eco47I GGWCC 1 cut(s) 235
Eco81I CCTNAGG 1 cut(s) 873
Eco88I CYCGRG 1 cut(s) 23
EcoNI CCTNNNNNAGG 1 cut(s) 964
EcoRII CCWGG 1 cut(s) 81
EcoRV GATATC 1 cut(s) 353
EcoT14I CCWWGG 3 cut(s) 324, 693, 786
EcoT22I ATGCAT 2 cut(s) 811, 1260
ErhI CCWWGG 3 cut(s) 324, 693, 786
Esp3I CGTCTC 1 cut(s) 20
FaeI CATG 7 cut(s) 394, 610, 813, 966, 991, 1258, 1323
FaqI GGGAC 2 cut(s) 342, 1109
FatI CATG 7 cut(s) 390, 606, 809, 962, 987, 1254, 1319
FauI CCCGC 1 cut(s) 280
FbaI TGATCA 1 cut(s) 847
Fnu4HI GCNGC 3 cut(s) 109, 195, 825
FokI GGATG 3 cut(s) 131, 332, 818
Fsp4HI GCNGC 3 cut(s) 109, 195, 825
FspBI CTAG 7 cut(s) 504, 540, 654, 828, 1209, 1272, 1331
GluI GCNGC 3 cut(s) 109, 195, 825
GsaI CCCAGC 2 cut(s) 588, 936
GsuI CTGGAG 1 cut(s) 539
HaeIII GGCC 3 cut(s) 834, 970, 1064
HapII CCGG 3 cut(s) 36, 317, 1235
HgaI GACGC 2 cut(s) 215, 223
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 7 cut(s) 394, 610, 813, 966, 991, 1258, 1323
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 6 cut(s) 258, 545, 616, 1106, 1160, 1231
HpaII CCGG 3 cut(s) 36, 317, 1235
HphI GGTGA 5 cut(s) 214, 601, 633, 889, 1201
Hpy188I TCNGA 3 cut(s) 550, 735, 1182
Hpy188III TCNNGA 5 cut(s) 317, 391, 485, 803, 1366
HpyAV CCTTC 3 cut(s) 59, 665, 1275
HpyCH4IV ACGT 3 cut(s) 29, 43, 150
HpyCH4V TGCA 4 cut(s) 809, 1241, 1258, 1348
HpyF10VI GCNNNNNNNGC 2 cut(s) 917, 1088
HpyF3I CTNAG 5 cut(s) 93, 296, 534, 599, 873
HpySE526I ACGT 3 cut(s) 29, 43, 150
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 7 cut(s) 394, 610, 813, 966, 991, 1258, 1323
Kpn2I TCCGGA 1 cut(s) 316
KroI GCCGGC 1 cut(s) 35
KroNI GCCGGC 1 cut(s) 37
Ksp22I TGATCA 1 cut(s) 847
Kzo9I GATC 9 cut(s) 89, 178, 268, 751, 847, 868, 1084, 1195, 1280
LmnI GCTCC 1 cut(s) 1217
Lsp1109I GCAGC 2 cut(s) 181, 811
LweI GCATC 3 cut(s) 310, 669, 796
MabI ACCWGGT 1 cut(s) 81
MaeI CTAG 7 cut(s) 504, 540, 654, 828, 1209, 1272, 1331
MaeII ACGT 3 cut(s) 29, 43, 150
MaeIII GTNAC 2 cut(s) 220, 836
MalI GATC 9 cut(s) 91, 180, 270, 753, 849, 870, 1086, 1197, 1282
MboI GATC 9 cut(s) 89, 178, 268, 751, 847, 868, 1084, 1195, 1280
MboII GAAGA 7 cut(s) 467, 473, 500, 563, 1011, 1169, 1237
MfeI CAATTG 2 cut(s) 139, 1111
MflI RGATCY 2 cut(s) 1195, 1280
MhlI GDGCHC 1 cut(s) 81
MlyI GAGTC 4 cut(s) 252, 625, 1100, 1169
MmeI TCCRAC 2 cut(s) 235, 432
Mph1103I ATGCAT 2 cut(s) 811, 1260
MroI TCCGGA 1 cut(s) 316
MroNI GCCGGC 1 cut(s) 35
MseI TTAA 7 cut(s) 464, 702, 794, 897, 941, 1043, 1130
MslI CAYNNNNRTG 1 cut(s) 572
MspCI CTTAAG 1 cut(s) 463
MspI CCGG 3 cut(s) 36, 317, 1235
MspR9I CCNGG 2 cut(s) 83, 1236
MunI CAATTG 2 cut(s) 139, 1111
MvaI CCWGG 1 cut(s) 83
MwoI GCNNNNNNNGC 2 cut(s) 917, 1088
NaeI GCCGGC 1 cut(s) 37
NciI CCSGG 1 cut(s) 1236
NdeII GATC 9 cut(s) 89, 178, 268, 751, 847, 868, 1084, 1195, 1280
NgoMIV GCCGGC 1 cut(s) 35
NlaIII CATG 7 cut(s) 394, 610, 813, 966, 991, 1258, 1323
NlaIV GGNNCC 2 cut(s) 236, 862
NmuCI GTSAC 2 cut(s) 220, 836
NsiI ATGCAT 2 cut(s) 811, 1260
NspI RCATGY 3 cut(s) 610, 813, 1258
OliI CACNNNNGTG 1 cut(s) 572
PaeI GCATGC 2 cut(s) 813, 1258
PagI TCATGA 1 cut(s) 390
PcsI WCGNNNNNNNCGW 2 cut(s) 26, 156
PdiI GCCGGC 1 cut(s) 37
PfeI GAWTC 2 cut(s) 545, 1231
Pfl23II CGTACG 1 cut(s) 40
PflMI CCANNNNNTGG 1 cut(s) 1365
PkrI GCNGC 3 cut(s) 110, 196, 826
PleI GAGTC 4 cut(s) 252, 624, 1100, 1168
PpsI GAGTC 4 cut(s) 252, 624, 1100, 1168
PshAI GACNNNNGTC 1 cut(s) 218
PshBI ATTAAT 1 cut(s) 897
Psp6I CCWGG 1 cut(s) 81
PspFI CCCAGC 2 cut(s) 584, 932
PspGI CCWGG 1 cut(s) 81
PspLI CGTACG 1 cut(s) 40
PspN4I GGNNCC 2 cut(s) 236, 862
PspPI GGNCC 1 cut(s) 235
PsuI RGATCY 2 cut(s) 1195, 1280
RsaI GTAC 4 cut(s) 42, 145, 404, 1029
RsaNI GTAC 4 cut(s) 41, 144, 403, 1028
RseI CAYNNNNRTG 1 cut(s) 572
SaqAI TTAA 7 cut(s) 464, 702, 794, 897, 941, 1043, 1130
SatI GCNGC 3 cut(s) 109, 195, 825
Sau3AI GATC 9 cut(s) 89, 178, 268, 751, 847, 868, 1084, 1195, 1280
Sau96I GGNCC 1 cut(s) 235
SchI GAGTC 4 cut(s) 252, 625, 1100, 1169
ScrFI CCNGG 2 cut(s) 83, 1236
SduI GDGCHC 1 cut(s) 81
SexAI ACCWGGT 1 cut(s) 81
SfaNI GCATC 3 cut(s) 310, 669, 796
SinI GGWCC 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 572
SmlI CTYRAG 3 cut(s) 463, 760, 949
SmoI CTYRAG 3 cut(s) 463, 760, 949
SpeI ACTAGT 1 cut(s) 503
SphI GCATGC 2 cut(s) 813, 1258
SsiI CCGC 5 cut(s) 108, 111, 225, 273, 1005
SspMI CTAG 7 cut(s) 504, 540, 654, 828, 1209, 1272, 1331
StyD4I CCNGG 2 cut(s) 81, 1234
StyI CCWWGG 3 cut(s) 324, 693, 786
TaiI ACGT 3 cut(s) 32, 46, 153
TaqI TCGA 4 cut(s) 88, 159, 199, 278
TauI GCSGC 1 cut(s) 111
TfiI GAWTC 2 cut(s) 545, 1231
Tru1I TTAA 7 cut(s) 464, 702, 794, 897, 941, 1043, 1130
Tru9I TTAA 7 cut(s) 464, 702, 794, 897, 941, 1043, 1130
TscAI CASTG 1 cut(s) 603
TseFI GTSAC 2 cut(s) 220, 836
TseI GCWGC 2 cut(s) 194, 824
Tsp45I GTSAC 2 cut(s) 220, 836
TspDTI ATGAA 8 cut(s) 379, 446, 528, 880, 1110, 1244, 1257, 1308
TspGWI ACGGA 1 cut(s) 873
TspRI CASTG 1 cut(s) 603
Van91I CCANNNNNTGG 1 cut(s) 1365
Vha464I CTTAAG 1 cut(s) 463
VpaK11BI GGWCC 1 cut(s) 235
VspI ATTAAT 1 cut(s) 897
XagI CCTNNNNNAGG 1 cut(s) 964
XapI RAATTY 1 cut(s) 1100
XceI RCATGY 3 cut(s) 610, 813, 1258
XcmI CCANNNNNNNNNTGG 1 cut(s) 1057
XspI CTAG 7 cut(s) 504, 540, 654, 828, 1209, 1272, 1331
Zsp2I ATGCAT 2 cut(s) 811, 1260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.